Experiment: ICP3_phage_411_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_19185 and CSW01_19190 are separated by 255 nucleotides CSW01_19190 and CSW01_19195 are separated by 76 nucleotides CSW01_19195 and CSW01_19200 are separated by 114 nucleotides CSW01_19200 and CSW01_19205 are separated by 209 nucleotides
CSW01_19185: CSW01_19185 - 3-methyladenine DNA glycosylase, at 964,271 to 965,629
_19185
CSW01_19190: CSW01_19190 - DoxX family protein, at 965,885 to 966,331
_19190
CSW01_19195: CSW01_19195 - LysR family transcriptional regulator, at 966,408 to 967,328
_19195
CSW01_19200: CSW01_19200 - hypothetical protein, at 967,443 to 967,802
_19200
CSW01_19205: CSW01_19205 - flavohemoglobin expression-modulating QEGLA motif protein, at 968,012 to 969,872
_19205
Position (kb) 966
967
968 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 965.539 kb on - strand at 965.579 kb on + strand at 965.587 kb on - strand at 965.599 kb on + strand at 965.657 kb on + strand at 965.670 kb on - strand at 965.675 kb on + strand at 965.675 kb on + strand at 965.675 kb on + strand at 965.683 kb on - strand at 965.699 kb on + strand at 965.707 kb on - strand at 965.909 kb on + strand at 965.937 kb on + strand, within CSW01_19190 at 965.937 kb on + strand, within CSW01_19190 at 965.937 kb on + strand, within CSW01_19190 at 965.945 kb on - strand, within CSW01_19190 at 965.945 kb on - strand, within CSW01_19190 at 965.950 kb on - strand, within CSW01_19190 at 965.982 kb on + strand, within CSW01_19190 at 966.032 kb on + strand, within CSW01_19190 at 966.054 kb on + strand, within CSW01_19190 at 966.054 kb on + strand, within CSW01_19190 at 966.054 kb on + strand, within CSW01_19190 at 966.054 kb on + strand, within CSW01_19190 at 966.062 kb on - strand, within CSW01_19190 at 966.065 kb on + strand, within CSW01_19190 at 966.065 kb on + strand, within CSW01_19190 at 966.333 kb on - strand at 966.390 kb on + strand at 966.415 kb on + strand at 966.567 kb on + strand, within CSW01_19195 at 966.596 kb on - strand, within CSW01_19195 at 966.596 kb on - strand, within CSW01_19195 at 966.608 kb on - strand, within CSW01_19195 at 966.781 kb on + strand, within CSW01_19195 at 966.841 kb on + strand, within CSW01_19195 at 966.913 kb on - strand, within CSW01_19195 at 966.962 kb on + strand, within CSW01_19195 at 966.962 kb on + strand, within CSW01_19195 at 966.970 kb on - strand, within CSW01_19195 at 966.970 kb on - strand, within CSW01_19195 at 966.988 kb on + strand, within CSW01_19195 at 967.015 kb on - strand, within CSW01_19195 at 967.036 kb on - strand, within CSW01_19195 at 967.073 kb on - strand, within CSW01_19195 at 967.078 kb on + strand, within CSW01_19195 at 967.078 kb on + strand, within CSW01_19195 at 967.078 kb on + strand, within CSW01_19195 at 967.117 kb on - strand, within CSW01_19195 at 967.147 kb on + strand, within CSW01_19195 at 967.249 kb on + strand at 967.259 kb on + strand at 967.300 kb on + strand at 967.406 kb on + strand at 967.443 kb on - strand at 967.453 kb on - strand at 967.453 kb on - strand at 967.760 kb on + strand, within CSW01_19200 at 967.768 kb on - strand at 967.796 kb on + strand at 967.804 kb on - strand at 968.110 kb on - strand at 968.110 kb on - strand at 968.140 kb on - strand at 968.172 kb on + strand at 968.180 kb on - strand at 968.212 kb on - strand, within CSW01_19205 at 968.212 kb on - strand, within CSW01_19205 at 968.292 kb on + strand, within CSW01_19205
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1 remove 965,539 - +1.3 965,579 + +0.7 965,587 - +0.4 965,599 + +0.5 965,657 + -1.4 965,670 - -1.6 965,675 + -0.9 965,675 + -0.9 965,675 + -1.2 965,683 - -0.6 965,699 + +1.4 965,707 - +1.6 965,909 + +0.4 965,937 + CSW01_19190 0.12 +0.7 965,937 + CSW01_19190 0.12 +0.4 965,937 + CSW01_19190 0.12 +0.5 965,945 - CSW01_19190 0.13 -1.1 965,945 - CSW01_19190 0.13 +0.3 965,950 - CSW01_19190 0.15 -0.1 965,982 + CSW01_19190 0.22 -0.9 966,032 + CSW01_19190 0.33 -2.2 966,054 + CSW01_19190 0.38 -1.3 966,054 + CSW01_19190 0.38 +0.8 966,054 + CSW01_19190 0.38 +1.7 966,054 + CSW01_19190 0.38 +0.5 966,062 - CSW01_19190 0.40 -1.2 966,065 + CSW01_19190 0.40 -1.7 966,065 + CSW01_19190 0.40 +0.3 966,333 - +0.5 966,390 + -2.3 966,415 + +0.4 966,567 + CSW01_19195 0.17 -2.6 966,596 - CSW01_19195 0.20 -1.6 966,596 - CSW01_19195 0.20 -0.1 966,608 - CSW01_19195 0.22 -0.6 966,781 + CSW01_19195 0.40 -2.5 966,841 + CSW01_19195 0.47 -1.3 966,913 - CSW01_19195 0.55 -0.1 966,962 + CSW01_19195 0.60 -2.9 966,962 + CSW01_19195 0.60 -0.6 966,970 - CSW01_19195 0.61 -1.6 966,970 - CSW01_19195 0.61 -1.5 966,988 + CSW01_19195 0.63 -1.0 967,015 - CSW01_19195 0.66 +1.5 967,036 - CSW01_19195 0.68 -1.2 967,073 - CSW01_19195 0.72 +0.5 967,078 + CSW01_19195 0.73 -1.3 967,078 + CSW01_19195 0.73 -1.0 967,078 + CSW01_19195 0.73 -0.0 967,117 - CSW01_19195 0.77 -0.6 967,147 + CSW01_19195 0.80 -3.0 967,249 + -1.9 967,259 + +0.8 967,300 + -0.9 967,406 + -2.3 967,443 - -1.0 967,453 - -2.7 967,453 - -2.8 967,760 + CSW01_19200 0.88 -0.4 967,768 - -1.0 967,796 + -2.0 967,804 - +1.2 968,110 - +0.1 968,110 - +2.3 968,140 - +1.6 968,172 + -0.3 968,180 - -0.3 968,212 - CSW01_19205 0.11 +1.1 968,212 - CSW01_19205 0.11 +0.7 968,292 + CSW01_19205 0.15 +1.1
Or see this region's nucleotide sequence