Experiment: ICP3_phage_411_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_19005 and CSW01_19010 are separated by 19 nucleotides CSW01_19010 and CSW01_19015 are separated by 19 nucleotides CSW01_19015 and CSW01_19020 are separated by 130 nucleotides
CSW01_19005: CSW01_19005 - amino acid ABC transporter substrate-binding protein, at 924,858 to 925,589
_19005
CSW01_19010: CSW01_19010 - methyl-accepting chemotaxis protein, at 925,609 to 926,493
_19010
CSW01_19015: CSW01_19015 - chemotaxis protein, at 926,513 to 927,157
_19015
CSW01_19020: CSW01_19020 - ABC transporter, at 927,288 to 928,031
_19020
Position (kb) 926
927
928 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 925.532 kb on - strand at 925.553 kb on + strand at 925.553 kb on + strand at 925.553 kb on + strand at 925.553 kb on + strand at 925.553 kb on + strand at 925.553 kb on + strand at 925.553 kb on + strand at 925.561 kb on - strand at 925.563 kb on + strand at 925.563 kb on + strand at 925.571 kb on - strand at 925.571 kb on - strand at 925.613 kb on + strand at 925.621 kb on - strand at 925.621 kb on - strand at 925.621 kb on - strand at 925.621 kb on - strand at 925.630 kb on + strand at 925.630 kb on + strand at 925.696 kb on + strand at 925.696 kb on + strand at 925.704 kb on - strand, within CSW01_19010 at 925.762 kb on + strand, within CSW01_19010 at 925.891 kb on - strand, within CSW01_19010 at 926.075 kb on + strand, within CSW01_19010 at 926.213 kb on - strand, within CSW01_19010 at 926.244 kb on - strand, within CSW01_19010 at 926.308 kb on + strand, within CSW01_19010 at 926.313 kb on + strand, within CSW01_19010 at 926.316 kb on - strand, within CSW01_19010 at 926.321 kb on - strand, within CSW01_19010 at 926.321 kb on - strand, within CSW01_19010 at 926.395 kb on + strand, within CSW01_19010 at 926.426 kb on - strand at 926.437 kb on - strand at 926.437 kb on - strand at 926.460 kb on + strand at 926.465 kb on + strand at 926.465 kb on + strand at 926.465 kb on + strand at 926.465 kb on + strand at 926.473 kb on - strand at 926.473 kb on - strand at 926.475 kb on + strand at 926.483 kb on - strand at 926.488 kb on + strand at 926.541 kb on - strand at 926.562 kb on - strand at 926.592 kb on + strand, within CSW01_19015 at 926.634 kb on - strand, within CSW01_19015 at 926.659 kb on - strand, within CSW01_19015 at 926.768 kb on + strand, within CSW01_19015 at 926.768 kb on + strand, within CSW01_19015 at 926.864 kb on - strand, within CSW01_19015 at 926.935 kb on + strand, within CSW01_19015 at 926.977 kb on - strand, within CSW01_19015 at 927.018 kb on - strand, within CSW01_19015 at 927.026 kb on - strand, within CSW01_19015 at 927.026 kb on - strand, within CSW01_19015 at 927.036 kb on - strand, within CSW01_19015 at 927.147 kb on - strand at 927.147 kb on - strand at 927.173 kb on - strand at 927.219 kb on - strand at 927.223 kb on + strand at 927.412 kb on + strand, within CSW01_19020 at 927.530 kb on - strand, within CSW01_19020 at 927.621 kb on - strand, within CSW01_19020 at 927.635 kb on + strand, within CSW01_19020 at 927.635 kb on + strand, within CSW01_19020 at 927.643 kb on - strand, within CSW01_19020 at 927.789 kb on + strand, within CSW01_19020 at 927.814 kb on + strand, within CSW01_19020 at 927.814 kb on + strand, within CSW01_19020 at 927.822 kb on - strand, within CSW01_19020 at 927.834 kb on - strand, within CSW01_19020 at 927.846 kb on + strand, within CSW01_19020 at 927.871 kb on + strand, within CSW01_19020 at 927.909 kb on + strand, within CSW01_19020 at 927.909 kb on + strand, within CSW01_19020 at 927.914 kb on + strand, within CSW01_19020 at 927.917 kb on - strand, within CSW01_19020 at 927.917 kb on - strand, within CSW01_19020 at 927.917 kb on - strand, within CSW01_19020 at 927.917 kb on - strand, within CSW01_19020 at 927.917 kb on - strand, within CSW01_19020 at 927.917 kb on - strand, within CSW01_19020 at 927.922 kb on - strand, within CSW01_19020 at 927.922 kb on - strand, within CSW01_19020 at 927.955 kb on + strand, within CSW01_19020 at 927.955 kb on - strand, within CSW01_19020 at 927.963 kb on - strand at 927.963 kb on - strand at 927.963 kb on - strand at 928.017 kb on - strand at 928.077 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1 remove 925,532 - +0.1 925,553 + +1.4 925,553 + +0.5 925,553 + -0.5 925,553 + +1.0 925,553 + +1.9 925,553 + +0.5 925,553 + +0.6 925,561 - +1.2 925,563 + +0.5 925,563 + -2.3 925,571 - +0.7 925,571 - +0.1 925,613 + +1.3 925,621 - -0.2 925,621 - -2.5 925,621 - -1.9 925,621 - -0.0 925,630 + -1.9 925,630 + +2.0 925,696 + +1.3 925,696 + -2.3 925,704 - CSW01_19010 0.11 +2.6 925,762 + CSW01_19010 0.17 -0.8 925,891 - CSW01_19010 0.32 -1.0 926,075 + CSW01_19010 0.53 +1.0 926,213 - CSW01_19010 0.68 -1.4 926,244 - CSW01_19010 0.72 -0.6 926,308 + CSW01_19010 0.79 -1.1 926,313 + CSW01_19010 0.80 -0.4 926,316 - CSW01_19010 0.80 -0.5 926,321 - CSW01_19010 0.80 +0.0 926,321 - CSW01_19010 0.80 -0.4 926,395 + CSW01_19010 0.89 -2.2 926,426 - +0.8 926,437 - -2.7 926,437 - -0.6 926,460 + -1.2 926,465 + -1.6 926,465 + -1.6 926,465 + +1.2 926,465 + -2.3 926,473 - +1.0 926,473 - +0.3 926,475 + +0.1 926,483 - -1.5 926,488 + -0.5 926,541 - -0.3 926,562 - -1.1 926,592 + CSW01_19015 0.12 +0.2 926,634 - CSW01_19015 0.19 -0.2 926,659 - CSW01_19015 0.23 -3.7 926,768 + CSW01_19015 0.40 +0.1 926,768 + CSW01_19015 0.40 +0.1 926,864 - CSW01_19015 0.54 +0.4 926,935 + CSW01_19015 0.65 -0.3 926,977 - CSW01_19015 0.72 -1.2 927,018 - CSW01_19015 0.78 -0.2 927,026 - CSW01_19015 0.80 +1.8 927,026 - CSW01_19015 0.80 +0.5 927,036 - CSW01_19015 0.81 -0.6 927,147 - +0.6 927,147 - -0.1 927,173 - -0.2 927,219 - +0.8 927,223 + +0.4 927,412 + CSW01_19020 0.17 -1.0 927,530 - CSW01_19020 0.33 -2.6 927,621 - CSW01_19020 0.45 -2.5 927,635 + CSW01_19020 0.47 -1.1 927,635 + CSW01_19020 0.47 +0.5 927,643 - CSW01_19020 0.48 -3.0 927,789 + CSW01_19020 0.67 -2.2 927,814 + CSW01_19020 0.71 +0.2 927,814 + CSW01_19020 0.71 +1.6 927,822 - CSW01_19020 0.72 +0.9 927,834 - CSW01_19020 0.73 -0.4 927,846 + CSW01_19020 0.75 +0.4 927,871 + CSW01_19020 0.78 +1.2 927,909 + CSW01_19020 0.83 +0.6 927,909 + CSW01_19020 0.83 -0.5 927,914 + CSW01_19020 0.84 -0.7 927,917 - CSW01_19020 0.85 -0.3 927,917 - CSW01_19020 0.85 +0.6 927,917 - CSW01_19020 0.85 +1.9 927,917 - CSW01_19020 0.85 +0.2 927,917 - CSW01_19020 0.85 -0.8 927,917 - CSW01_19020 0.85 +0.2 927,922 - CSW01_19020 0.85 -0.2 927,922 - CSW01_19020 0.85 +0.3 927,955 + CSW01_19020 0.90 +0.2 927,955 - CSW01_19020 0.90 -2.7 927,963 - -2.5 927,963 - -1.0 927,963 - -2.9 928,017 - +1.2 928,077 - -2.9
Or see this region's nucleotide sequence