Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18820

Experiment: ICP3_phage_411_MOI_rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_18810 and CSW01_18815 overlap by 12 nucleotidesCSW01_18815 and CSW01_18820 are separated by 99 nucleotidesCSW01_18820 and CSW01_18825 are separated by 118 nucleotides CSW01_18810: CSW01_18810 - DUF2817 domain-containing protein, at 885,605 to 886,543 _18810 CSW01_18815: CSW01_18815 - AraC family transcriptional regulator, at 886,532 to 887,323 _18815 CSW01_18820: CSW01_18820 - EamA/RhaT family transporter, at 887,423 to 888,322 _18820 CSW01_18825: CSW01_18825 - GGDEF domain-containing protein, at 888,441 to 889,406 _18825 Position (kb) 887 888 889Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 886.440 kb on + strand, within CSW01_18810at 886.440 kb on + strand, within CSW01_18810at 886.440 kb on + strand, within CSW01_18810at 886.440 kb on + strand, within CSW01_18810at 886.440 kb on + strand, within CSW01_18810at 886.440 kb on + strand, within CSW01_18810at 886.448 kb on - strand, within CSW01_18810at 886.448 kb on - strand, within CSW01_18810at 886.454 kb on + strandat 886.454 kb on + strandat 886.460 kb on - strandat 886.470 kb on - strandat 886.497 kb on - strandat 886.613 kb on + strand, within CSW01_18815at 886.615 kb on - strand, within CSW01_18815at 886.625 kb on + strand, within CSW01_18815at 886.625 kb on + strand, within CSW01_18815at 886.627 kb on - strand, within CSW01_18815at 886.633 kb on - strand, within CSW01_18815at 886.652 kb on + strand, within CSW01_18815at 886.726 kb on - strand, within CSW01_18815at 886.907 kb on + strand, within CSW01_18815at 886.927 kb on + strand, within CSW01_18815at 886.942 kb on - strand, within CSW01_18815at 886.952 kb on - strand, within CSW01_18815at 886.952 kb on - strand, within CSW01_18815at 887.033 kb on + strand, within CSW01_18815at 887.046 kb on + strand, within CSW01_18815at 887.144 kb on - strand, within CSW01_18815at 887.558 kb on - strand, within CSW01_18820at 887.569 kb on + strand, within CSW01_18820at 887.569 kb on + strand, within CSW01_18820at 887.577 kb on - strand, within CSW01_18820at 887.577 kb on - strand, within CSW01_18820at 887.577 kb on - strand, within CSW01_18820at 887.577 kb on - strand, within CSW01_18820at 887.589 kb on + strand, within CSW01_18820at 887.675 kb on + strand, within CSW01_18820at 887.811 kb on + strand, within CSW01_18820at 887.819 kb on - strand, within CSW01_18820at 887.880 kb on + strand, within CSW01_18820at 887.880 kb on + strand, within CSW01_18820at 887.888 kb on - strand, within CSW01_18820at 887.888 kb on - strand, within CSW01_18820at 887.890 kb on + strand, within CSW01_18820at 887.902 kb on + strand, within CSW01_18820at 887.909 kb on + strand, within CSW01_18820at 887.910 kb on - strand, within CSW01_18820at 887.917 kb on - strand, within CSW01_18820at 887.917 kb on - strand, within CSW01_18820at 888.006 kb on + strand, within CSW01_18820at 888.014 kb on - strand, within CSW01_18820at 888.095 kb on + strand, within CSW01_18820at 888.103 kb on - strand, within CSW01_18820at 888.429 kb on - strandat 888.463 kb on - strandat 888.604 kb on - strand, within CSW01_18825at 888.624 kb on - strand, within CSW01_18825at 888.808 kb on + strand, within CSW01_18825at 888.809 kb on - strand, within CSW01_18825at 888.813 kb on + strand, within CSW01_18825at 888.813 kb on + strand, within CSW01_18825at 888.813 kb on + strand, within CSW01_18825at 888.813 kb on + strand, within CSW01_18825at 888.813 kb on + strand, within CSW01_18825at 888.813 kb on + strand, within CSW01_18825at 888.821 kb on - strand, within CSW01_18825at 888.821 kb on - strand, within CSW01_18825at 888.877 kb on + strand, within CSW01_18825at 888.980 kb on - strand, within CSW01_18825at 888.999 kb on - strand, within CSW01_18825at 889.064 kb on + strand, within CSW01_18825at 889.233 kb on - strand, within CSW01_18825at 889.254 kb on + strand, within CSW01_18825at 889.273 kb on + strand, within CSW01_18825at 889.273 kb on + strand, within CSW01_18825at 889.281 kb on - strand, within CSW01_18825

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1
remove
886,440 + CSW01_18810 0.89 -1.1
886,440 + CSW01_18810 0.89 -0.4
886,440 + CSW01_18810 0.89 -1.8
886,440 + CSW01_18810 0.89 +0.6
886,440 + CSW01_18810 0.89 -0.2
886,440 + CSW01_18810 0.89 -2.9
886,448 - CSW01_18810 0.90 -3.1
886,448 - CSW01_18810 0.90 -2.9
886,454 + -0.9
886,454 + -0.3
886,460 - +1.6
886,470 - +2.0
886,497 - +0.2
886,613 + CSW01_18815 0.10 -0.3
886,615 - CSW01_18815 0.10 +0.7
886,625 + CSW01_18815 0.12 +1.2
886,625 + CSW01_18815 0.12 -0.6
886,627 - CSW01_18815 0.12 -1.6
886,633 - CSW01_18815 0.13 -1.4
886,652 + CSW01_18815 0.15 -2.5
886,726 - CSW01_18815 0.24 -3.2
886,907 + CSW01_18815 0.47 +2.5
886,927 + CSW01_18815 0.50 +0.8
886,942 - CSW01_18815 0.52 -0.2
886,952 - CSW01_18815 0.53 +1.7
886,952 - CSW01_18815 0.53 -0.5
887,033 + CSW01_18815 0.63 -1.0
887,046 + CSW01_18815 0.65 +0.9
887,144 - CSW01_18815 0.77 +0.2
887,558 - CSW01_18820 0.15 -1.7
887,569 + CSW01_18820 0.16 +1.5
887,569 + CSW01_18820 0.16 -0.4
887,577 - CSW01_18820 0.17 -1.8
887,577 - CSW01_18820 0.17 +0.5
887,577 - CSW01_18820 0.17 +1.7
887,577 - CSW01_18820 0.17 -3.0
887,589 + CSW01_18820 0.18 -1.2
887,675 + CSW01_18820 0.28 +0.7
887,811 + CSW01_18820 0.43 +0.9
887,819 - CSW01_18820 0.44 -1.5
887,880 + CSW01_18820 0.51 +1.3
887,880 + CSW01_18820 0.51 -2.5
887,888 - CSW01_18820 0.52 +0.4
887,888 - CSW01_18820 0.52 -0.8
887,890 + CSW01_18820 0.52 -2.2
887,902 + CSW01_18820 0.53 -0.4
887,909 + CSW01_18820 0.54 -1.3
887,910 - CSW01_18820 0.54 -0.6
887,917 - CSW01_18820 0.55 -3.3
887,917 - CSW01_18820 0.55 -1.4
888,006 + CSW01_18820 0.65 +0.2
888,014 - CSW01_18820 0.66 -0.1
888,095 + CSW01_18820 0.75 -0.8
888,103 - CSW01_18820 0.76 -0.6
888,429 - -1.7
888,463 - -1.0
888,604 - CSW01_18825 0.17 -1.4
888,624 - CSW01_18825 0.19 +0.0
888,808 + CSW01_18825 0.38 -3.2
888,809 - CSW01_18825 0.38 -0.5
888,813 + CSW01_18825 0.39 -1.0
888,813 + CSW01_18825 0.39 -3.1
888,813 + CSW01_18825 0.39 +0.1
888,813 + CSW01_18825 0.39 -2.2
888,813 + CSW01_18825 0.39 -1.2
888,813 + CSW01_18825 0.39 +0.0
888,821 - CSW01_18825 0.39 -0.4
888,821 - CSW01_18825 0.39 -1.8
888,877 + CSW01_18825 0.45 +0.4
888,980 - CSW01_18825 0.56 -1.5
888,999 - CSW01_18825 0.58 +2.3
889,064 + CSW01_18825 0.64 +0.5
889,233 - CSW01_18825 0.82 -0.4
889,254 + CSW01_18825 0.84 -0.1
889,273 + CSW01_18825 0.86 -0.4
889,273 + CSW01_18825 0.86 +0.6
889,281 - CSW01_18825 0.87 -0.2

Or see this region's nucleotide sequence