Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18695

Experiment: ICP3_phage_411_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18690 and CSW01_18695 are separated by 256 nucleotidesCSW01_18695 and CSW01_18700 overlap by 1 nucleotidesCSW01_18700 and CSW01_18705 overlap by 4 nucleotides CSW01_18690: CSW01_18690 - heme anaerobic degradation radical SAM methyltransferase ChuW/HutW, at 862,253 to 863,620 _18690 CSW01_18695: CSW01_18695 - energy transducer TonB, at 863,877 to 864,626 _18695 CSW01_18700: CSW01_18700 - biopolymer transporter exbB1, at 864,626 to 865,312 _18700 CSW01_18705: CSW01_18705 - biopolymer transporter exbD1, at 865,309 to 865,725 _18705 Position (kb) 863 864 865Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 862.884 kb on + strand, within CSW01_18690at 862.940 kb on - strand, within CSW01_18690at 863.059 kb on - strand, within CSW01_18690at 863.082 kb on - strand, within CSW01_18690at 863.090 kb on + strand, within CSW01_18690at 863.097 kb on + strand, within CSW01_18690at 863.122 kb on + strand, within CSW01_18690at 863.125 kb on + strand, within CSW01_18690at 863.202 kb on + strand, within CSW01_18690at 863.226 kb on + strand, within CSW01_18690at 863.229 kb on - strand, within CSW01_18690at 863.250 kb on - strand, within CSW01_18690at 863.286 kb on + strand, within CSW01_18690at 863.294 kb on - strand, within CSW01_18690at 863.294 kb on - strand, within CSW01_18690at 863.555 kb on - strandat 863.733 kb on - strandat 863.891 kb on + strandat 863.895 kb on + strandat 863.917 kb on + strandat 863.976 kb on + strand, within CSW01_18695at 864.136 kb on + strand, within CSW01_18695at 864.143 kb on + strand, within CSW01_18695at 864.206 kb on + strand, within CSW01_18695at 864.294 kb on - strand, within CSW01_18695at 864.316 kb on - strand, within CSW01_18695at 864.380 kb on + strand, within CSW01_18695at 864.427 kb on + strand, within CSW01_18695at 864.532 kb on + strand, within CSW01_18695at 864.540 kb on - strand, within CSW01_18695at 864.699 kb on + strand, within CSW01_18700at 864.707 kb on - strand, within CSW01_18700at 864.707 kb on - strand, within CSW01_18700at 864.741 kb on + strand, within CSW01_18700at 864.751 kb on + strand, within CSW01_18700at 864.843 kb on + strand, within CSW01_18700at 864.856 kb on - strand, within CSW01_18700at 864.861 kb on - strand, within CSW01_18700at 864.861 kb on - strand, within CSW01_18700at 864.983 kb on + strand, within CSW01_18700at 865.017 kb on - strand, within CSW01_18700at 865.022 kb on - strand, within CSW01_18700at 865.047 kb on - strand, within CSW01_18700at 865.068 kb on + strand, within CSW01_18700at 865.103 kb on - strand, within CSW01_18700at 865.116 kb on + strand, within CSW01_18700at 865.200 kb on + strand, within CSW01_18700at 865.212 kb on - strand, within CSW01_18700at 865.228 kb on + strand, within CSW01_18700at 865.229 kb on - strand, within CSW01_18700at 865.229 kb on - strand, within CSW01_18700at 865.242 kb on + strand, within CSW01_18700at 865.242 kb on + strand, within CSW01_18700at 865.248 kb on - strandat 865.356 kb on - strand, within CSW01_18705at 865.446 kb on + strand, within CSW01_18705at 865.536 kb on + strand, within CSW01_18705at 865.542 kb on + strand, within CSW01_18705at 865.550 kb on - strand, within CSW01_18705at 865.550 kb on - strand, within CSW01_18705at 865.550 kb on - strand, within CSW01_18705at 865.556 kb on + strand, within CSW01_18705at 865.564 kb on - strand, within CSW01_18705at 865.571 kb on - strand, within CSW01_18705

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1
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862,884 + CSW01_18690 0.46 +0.7
862,940 - CSW01_18690 0.50 +0.9
863,059 - CSW01_18690 0.59 -1.6
863,082 - CSW01_18690 0.61 -1.8
863,090 + CSW01_18690 0.61 +0.2
863,097 + CSW01_18690 0.62 +0.6
863,122 + CSW01_18690 0.64 -3.8
863,125 + CSW01_18690 0.64 -0.3
863,202 + CSW01_18690 0.69 +1.7
863,226 + CSW01_18690 0.71 +0.3
863,229 - CSW01_18690 0.71 -1.2
863,250 - CSW01_18690 0.73 +0.9
863,286 + CSW01_18690 0.76 -0.4
863,294 - CSW01_18690 0.76 -2.5
863,294 - CSW01_18690 0.76 +0.1
863,555 - -0.9
863,733 - +0.3
863,891 + +0.6
863,895 + +1.1
863,917 + -0.6
863,976 + CSW01_18695 0.13 -2.4
864,136 + CSW01_18695 0.35 +0.6
864,143 + CSW01_18695 0.35 -0.9
864,206 + CSW01_18695 0.44 -2.2
864,294 - CSW01_18695 0.56 -0.8
864,316 - CSW01_18695 0.59 +0.2
864,380 + CSW01_18695 0.67 -0.4
864,427 + CSW01_18695 0.73 +0.4
864,532 + CSW01_18695 0.87 -0.1
864,540 - CSW01_18695 0.88 +1.1
864,699 + CSW01_18700 0.11 +1.0
864,707 - CSW01_18700 0.12 -2.4
864,707 - CSW01_18700 0.12 -2.2
864,741 + CSW01_18700 0.17 -2.8
864,751 + CSW01_18700 0.18 +0.3
864,843 + CSW01_18700 0.32 -0.9
864,856 - CSW01_18700 0.33 -1.5
864,861 - CSW01_18700 0.34 +0.7
864,861 - CSW01_18700 0.34 -0.3
864,983 + CSW01_18700 0.52 -1.1
865,017 - CSW01_18700 0.57 +0.2
865,022 - CSW01_18700 0.58 +1.1
865,047 - CSW01_18700 0.61 +0.8
865,068 + CSW01_18700 0.64 -2.5
865,103 - CSW01_18700 0.69 -1.0
865,116 + CSW01_18700 0.71 +0.3
865,200 + CSW01_18700 0.84 +0.1
865,212 - CSW01_18700 0.85 -4.1
865,228 + CSW01_18700 0.88 -0.9
865,229 - CSW01_18700 0.88 -0.9
865,229 - CSW01_18700 0.88 +0.1
865,242 + CSW01_18700 0.90 -2.2
865,242 + CSW01_18700 0.90 -0.4
865,248 - +2.4
865,356 - CSW01_18705 0.11 -0.6
865,446 + CSW01_18705 0.33 +0.4
865,536 + CSW01_18705 0.54 -4.1
865,542 + CSW01_18705 0.56 +1.1
865,550 - CSW01_18705 0.58 +0.6
865,550 - CSW01_18705 0.58 -3.7
865,550 - CSW01_18705 0.58 +0.8
865,556 + CSW01_18705 0.59 -1.3
865,564 - CSW01_18705 0.61 -0.4
865,571 - CSW01_18705 0.63 -1.9

Or see this region's nucleotide sequence