Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18675

Experiment: ICP3_phage_411_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18670 and CSW01_18675 are separated by 140 nucleotidesCSW01_18675 and CSW01_18680 are separated by 301 nucleotidesCSW01_18680 and CSW01_18685 are separated by 24 nucleotides CSW01_18670: CSW01_18670 - CdaR family transcriptional regulator, at 857,853 to 858,992 _18670 CSW01_18675: CSW01_18675 - methyl-accepting chemotaxis protein, at 859,133 to 860,869 _18675 CSW01_18680: CSW01_18680 - heme utilization protein HutZ, at 861,171 to 861,701 _18680 CSW01_18685: CSW01_18685 - heme utilization cystosolic carrier protein HutX, at 861,726 to 862,229 _18685 Position (kb) 859 860 861Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 858.188 kb on + strand, within CSW01_18670at 858.201 kb on - strand, within CSW01_18670at 858.278 kb on - strand, within CSW01_18670at 858.292 kb on + strand, within CSW01_18670at 858.350 kb on + strand, within CSW01_18670at 858.350 kb on + strand, within CSW01_18670at 858.350 kb on + strand, within CSW01_18670at 858.356 kb on + strand, within CSW01_18670at 858.375 kb on - strand, within CSW01_18670at 858.458 kb on + strand, within CSW01_18670at 858.498 kb on + strand, within CSW01_18670at 858.508 kb on - strand, within CSW01_18670at 858.523 kb on - strand, within CSW01_18670at 858.523 kb on - strand, within CSW01_18670at 858.574 kb on + strand, within CSW01_18670at 858.631 kb on + strand, within CSW01_18670at 858.644 kb on - strand, within CSW01_18670at 858.644 kb on - strand, within CSW01_18670at 858.733 kb on - strand, within CSW01_18670at 858.776 kb on + strand, within CSW01_18670at 858.776 kb on + strand, within CSW01_18670at 858.785 kb on - strand, within CSW01_18670at 858.786 kb on + strand, within CSW01_18670at 858.816 kb on - strand, within CSW01_18670at 858.897 kb on - strandat 858.981 kb on + strandat 858.989 kb on - strandat 859.001 kb on + strandat 859.021 kb on - strandat 859.062 kb on + strandat 859.137 kb on + strandat 859.145 kb on - strandat 859.251 kb on + strandat 859.251 kb on + strandat 859.251 kb on + strandat 859.259 kb on - strandat 859.354 kb on - strand, within CSW01_18675at 859.354 kb on - strand, within CSW01_18675at 859.459 kb on + strand, within CSW01_18675at 859.467 kb on - strand, within CSW01_18675at 859.467 kb on - strand, within CSW01_18675at 859.467 kb on - strand, within CSW01_18675at 859.617 kb on - strand, within CSW01_18675at 859.795 kb on - strand, within CSW01_18675at 859.806 kb on - strand, within CSW01_18675at 859.870 kb on - strand, within CSW01_18675at 859.921 kb on - strand, within CSW01_18675at 859.978 kb on + strand, within CSW01_18675at 859.978 kb on + strand, within CSW01_18675at 859.988 kb on + strand, within CSW01_18675at 859.988 kb on + strand, within CSW01_18675at 860.094 kb on + strand, within CSW01_18675at 860.233 kb on + strand, within CSW01_18675at 860.303 kb on + strand, within CSW01_18675at 860.387 kb on + strand, within CSW01_18675at 860.476 kb on - strand, within CSW01_18675at 860.552 kb on + strand, within CSW01_18675at 860.683 kb on - strand, within CSW01_18675at 860.727 kb on - strandat 860.773 kb on + strandat 860.778 kb on + strandat 861.168 kb on + strandat 861.273 kb on + strand, within CSW01_18680at 861.297 kb on - strand, within CSW01_18680at 861.306 kb on + strand, within CSW01_18680at 861.518 kb on - strand, within CSW01_18680at 861.591 kb on + strand, within CSW01_18680at 861.638 kb on - strand, within CSW01_18680at 861.667 kb on - strandat 861.751 kb on + strandat 861.751 kb on + strandat 861.751 kb on + strandat 861.751 kb on + strandat 861.751 kb on + strandat 861.751 kb on + strandat 861.759 kb on - strandat 861.759 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1
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858,188 + CSW01_18670 0.29 -3.7
858,201 - CSW01_18670 0.31 +0.2
858,278 - CSW01_18670 0.37 -0.3
858,292 + CSW01_18670 0.39 -0.7
858,350 + CSW01_18670 0.44 -1.2
858,350 + CSW01_18670 0.44 +0.7
858,350 + CSW01_18670 0.44 +1.0
858,356 + CSW01_18670 0.44 -1.0
858,375 - CSW01_18670 0.46 -0.6
858,458 + CSW01_18670 0.53 -2.8
858,498 + CSW01_18670 0.57 -1.9
858,508 - CSW01_18670 0.57 -0.2
858,523 - CSW01_18670 0.59 +1.5
858,523 - CSW01_18670 0.59 -0.8
858,574 + CSW01_18670 0.63 +0.2
858,631 + CSW01_18670 0.68 -0.6
858,644 - CSW01_18670 0.69 -1.8
858,644 - CSW01_18670 0.69 +0.1
858,733 - CSW01_18670 0.77 +0.6
858,776 + CSW01_18670 0.81 -0.1
858,776 + CSW01_18670 0.81 +1.7
858,785 - CSW01_18670 0.82 +0.7
858,786 + CSW01_18670 0.82 +0.3
858,816 - CSW01_18670 0.84 -2.0
858,897 - +0.4
858,981 + +0.3
858,989 - -0.5
859,001 + -2.8
859,021 - +0.2
859,062 + +0.6
859,137 + -2.7
859,145 - +0.1
859,251 + -0.1
859,251 + -0.0
859,251 + -0.6
859,259 - -1.1
859,354 - CSW01_18675 0.13 -0.6
859,354 - CSW01_18675 0.13 -1.4
859,459 + CSW01_18675 0.19 -2.6
859,467 - CSW01_18675 0.19 -1.7
859,467 - CSW01_18675 0.19 +0.4
859,467 - CSW01_18675 0.19 +1.3
859,617 - CSW01_18675 0.28 -0.9
859,795 - CSW01_18675 0.38 -1.5
859,806 - CSW01_18675 0.39 -0.8
859,870 - CSW01_18675 0.42 -1.0
859,921 - CSW01_18675 0.45 -1.2
859,978 + CSW01_18675 0.49 -2.3
859,978 + CSW01_18675 0.49 +0.4
859,988 + CSW01_18675 0.49 +1.2
859,988 + CSW01_18675 0.49 +0.5
860,094 + CSW01_18675 0.55 +0.2
860,233 + CSW01_18675 0.63 -2.0
860,303 + CSW01_18675 0.67 -0.3
860,387 + CSW01_18675 0.72 -2.4
860,476 - CSW01_18675 0.77 -1.8
860,552 + CSW01_18675 0.82 -1.4
860,683 - CSW01_18675 0.89 +0.5
860,727 - +0.6
860,773 + +1.5
860,778 + -0.7
861,168 + -2.5
861,273 + CSW01_18680 0.19 +0.0
861,297 - CSW01_18680 0.24 +1.0
861,306 + CSW01_18680 0.25 +0.3
861,518 - CSW01_18680 0.65 +0.4
861,591 + CSW01_18680 0.79 +0.4
861,638 - CSW01_18680 0.88 -2.3
861,667 - -0.8
861,751 + +0.2
861,751 + +1.3
861,751 + -0.1
861,751 + -3.9
861,751 + -0.2
861,751 + -1.8
861,759 - -0.7
861,759 - +0.8

Or see this region's nucleotide sequence