Experiment: ICP3_phage_411_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18610 and CSW01_18615 are separated by 76 nucleotides CSW01_18615 and CSW01_18620 are separated by 167 nucleotides CSW01_18620 and CSW01_18625 are separated by 343 nucleotides
CSW01_18610: CSW01_18610 - cytochrome b562 family protein, at 843,744 to 844,127
_18610
CSW01_18615: CSW01_18615 - phosphatase, at 844,204 to 844,950
_18615
CSW01_18620: CSW01_18620 - metal-dependent phosphohydrolase, at 845,118 to 848,063
_18620
CSW01_18625: CSW01_18625 - glucose-6-phosphate dehydrogenase, at 848,407 to 849,912
_18625
Position (kb) 845
846
847
848
849 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 844.139 kb on + strand at 844.139 kb on + strand at 844.141 kb on + strand at 844.147 kb on - strand at 844.149 kb on + strand at 844.149 kb on - strand at 844.151 kb on + strand at 844.161 kb on + strand at 844.222 kb on - strand at 844.233 kb on + strand at 844.299 kb on + strand, within CSW01_18615 at 844.335 kb on + strand, within CSW01_18615 at 844.384 kb on + strand, within CSW01_18615 at 844.439 kb on - strand, within CSW01_18615 at 844.450 kb on + strand, within CSW01_18615 at 844.518 kb on - strand, within CSW01_18615 at 844.552 kb on - strand, within CSW01_18615 at 844.579 kb on + strand, within CSW01_18615 at 844.599 kb on + strand, within CSW01_18615 at 844.601 kb on + strand, within CSW01_18615 at 844.607 kb on - strand, within CSW01_18615 at 844.607 kb on - strand, within CSW01_18615 at 844.614 kb on - strand, within CSW01_18615 at 844.624 kb on - strand, within CSW01_18615 at 844.730 kb on - strand, within CSW01_18615 at 844.734 kb on - strand, within CSW01_18615 at 844.746 kb on + strand, within CSW01_18615 at 844.746 kb on + strand, within CSW01_18615 at 844.754 kb on - strand, within CSW01_18615 at 844.790 kb on - strand, within CSW01_18615 at 844.830 kb on + strand, within CSW01_18615 at 844.838 kb on + strand, within CSW01_18615 at 844.888 kb on - strand at 844.895 kb on + strand at 844.895 kb on + strand at 844.913 kb on + strand at 844.943 kb on + strand at 844.983 kb on + strand at 844.983 kb on + strand at 844.991 kb on - strand at 844.991 kb on - strand at 844.991 kb on - strand at 844.991 kb on - strand at 844.991 kb on - strand at 844.991 kb on - strand at 844.995 kb on + strand at 844.995 kb on + strand at 845.004 kb on - strand at 845.005 kb on - strand at 845.005 kb on - strand at 845.010 kb on + strand at 845.017 kb on + strand at 845.033 kb on - strand at 845.033 kb on - strand at 845.033 kb on - strand at 845.266 kb on + strand at 845.285 kb on + strand at 845.316 kb on - strand at 845.324 kb on - strand at 845.367 kb on + strand at 845.367 kb on + strand at 845.367 kb on + strand at 845.367 kb on + strand at 845.367 kb on + strand at 845.375 kb on - strand at 845.375 kb on - strand at 845.375 kb on - strand at 845.375 kb on - strand at 845.375 kb on - strand at 845.375 kb on - strand at 845.375 kb on - strand at 845.406 kb on + strand at 845.432 kb on + strand, within CSW01_18620 at 845.449 kb on + strand, within CSW01_18620 at 845.457 kb on - strand, within CSW01_18620 at 845.457 kb on - strand, within CSW01_18620 at 845.457 kb on - strand, within CSW01_18620 at 845.586 kb on + strand, within CSW01_18620 at 845.586 kb on + strand, within CSW01_18620 at 845.594 kb on - strand, within CSW01_18620 at 845.756 kb on - strand, within CSW01_18620 at 845.779 kb on + strand, within CSW01_18620 at 845.779 kb on + strand, within CSW01_18620 at 845.780 kb on - strand, within CSW01_18620 at 845.780 kb on - strand, within CSW01_18620 at 845.784 kb on + strand, within CSW01_18620 at 845.792 kb on - strand, within CSW01_18620 at 845.806 kb on + strand, within CSW01_18620 at 845.836 kb on + strand, within CSW01_18620 at 845.844 kb on - strand, within CSW01_18620 at 845.918 kb on + strand, within CSW01_18620 at 845.926 kb on + strand, within CSW01_18620 at 845.926 kb on + strand, within CSW01_18620 at 845.926 kb on + strand, within CSW01_18620 at 845.926 kb on + strand, within CSW01_18620 at 845.932 kb on - strand, within CSW01_18620 at 845.934 kb on - strand, within CSW01_18620 at 845.983 kb on - strand, within CSW01_18620 at 846.004 kb on - strand, within CSW01_18620 at 846.045 kb on + strand, within CSW01_18620 at 846.088 kb on + strand, within CSW01_18620 at 846.120 kb on + strand, within CSW01_18620 at 846.125 kb on + strand, within CSW01_18620 at 846.410 kb on - strand, within CSW01_18620 at 846.468 kb on + strand, within CSW01_18620 at 846.468 kb on + strand, within CSW01_18620 at 846.493 kb on - strand, within CSW01_18620 at 846.513 kb on - strand, within CSW01_18620 at 846.561 kb on + strand, within CSW01_18620 at 846.567 kb on - strand, within CSW01_18620 at 846.604 kb on + strand, within CSW01_18620 at 846.604 kb on + strand, within CSW01_18620 at 846.612 kb on - strand, within CSW01_18620 at 846.633 kb on + strand, within CSW01_18620 at 846.634 kb on - strand, within CSW01_18620 at 846.698 kb on - strand, within CSW01_18620 at 846.700 kb on - strand, within CSW01_18620 at 846.702 kb on + strand, within CSW01_18620 at 846.710 kb on - strand, within CSW01_18620 at 846.710 kb on - strand, within CSW01_18620 at 846.751 kb on - strand, within CSW01_18620 at 846.798 kb on + strand, within CSW01_18620 at 846.934 kb on + strand, within CSW01_18620 at 846.936 kb on + strand, within CSW01_18620 at 846.949 kb on + strand, within CSW01_18620 at 847.030 kb on + strand, within CSW01_18620 at 847.030 kb on + strand, within CSW01_18620 at 847.030 kb on + strand, within CSW01_18620 at 847.038 kb on - strand, within CSW01_18620 at 847.038 kb on - strand, within CSW01_18620 at 847.038 kb on - strand, within CSW01_18620 at 847.038 kb on - strand, within CSW01_18620 at 847.047 kb on + strand, within CSW01_18620 at 847.050 kb on - strand, within CSW01_18620 at 847.155 kb on + strand, within CSW01_18620 at 847.165 kb on + strand, within CSW01_18620 at 847.242 kb on + strand, within CSW01_18620 at 847.301 kb on + strand, within CSW01_18620 at 847.301 kb on + strand, within CSW01_18620 at 847.301 kb on + strand, within CSW01_18620 at 847.301 kb on + strand, within CSW01_18620 at 847.301 kb on + strand, within CSW01_18620 at 847.301 kb on + strand, within CSW01_18620 at 847.309 kb on - strand, within CSW01_18620 at 847.309 kb on - strand, within CSW01_18620 at 847.315 kb on + strand, within CSW01_18620 at 847.328 kb on - strand, within CSW01_18620 at 847.335 kb on - strand, within CSW01_18620 at 847.389 kb on - strand, within CSW01_18620 at 847.411 kb on - strand, within CSW01_18620 at 847.458 kb on - strand, within CSW01_18620 at 847.567 kb on + strand, within CSW01_18620 at 847.570 kb on - strand, within CSW01_18620 at 847.586 kb on + strand, within CSW01_18620 at 847.586 kb on + strand, within CSW01_18620 at 847.586 kb on + strand, within CSW01_18620 at 847.656 kb on + strand, within CSW01_18620 at 847.664 kb on - strand, within CSW01_18620 at 847.665 kb on + strand, within CSW01_18620 at 847.673 kb on - strand, within CSW01_18620 at 847.681 kb on + strand, within CSW01_18620 at 847.786 kb on - strand at 847.786 kb on - strand at 847.801 kb on - strand at 847.821 kb on + strand at 847.836 kb on - strand at 847.844 kb on - strand at 847.861 kb on - strand at 847.861 kb on - strand at 847.861 kb on - strand at 847.890 kb on + strand at 847.915 kb on + strand at 847.915 kb on + strand at 847.915 kb on + strand at 847.943 kb on + strand at 847.951 kb on - strand at 848.107 kb on - strand at 848.187 kb on + strand at 848.210 kb on - strand at 848.340 kb on - strand at 848.340 kb on - strand at 848.341 kb on - strand at 848.468 kb on + strand at 848.496 kb on + strand at 848.496 kb on + strand at 848.496 kb on + strand at 848.496 kb on + strand at 848.602 kb on - strand, within CSW01_18625 at 848.604 kb on - strand, within CSW01_18625 at 848.637 kb on - strand, within CSW01_18625 at 848.637 kb on - strand, within CSW01_18625 at 848.662 kb on + strand, within CSW01_18625 at 848.672 kb on + strand, within CSW01_18625 at 848.672 kb on + strand, within CSW01_18625 at 848.680 kb on - strand, within CSW01_18625 at 848.680 kb on - strand, within CSW01_18625 at 848.680 kb on - strand, within CSW01_18625 at 848.721 kb on + strand, within CSW01_18625 at 848.729 kb on - strand, within CSW01_18625 at 848.743 kb on - strand, within CSW01_18625 at 848.745 kb on + strand, within CSW01_18625 at 848.753 kb on - strand, within CSW01_18625 at 848.753 kb on - strand, within CSW01_18625 at 848.753 kb on - strand, within CSW01_18625 at 848.757 kb on + strand, within CSW01_18625 at 848.757 kb on + strand, within CSW01_18625 at 848.765 kb on - strand, within CSW01_18625 at 848.888 kb on + strand, within CSW01_18625 at 848.945 kb on + strand, within CSW01_18625 at 848.996 kb on - strand, within CSW01_18625
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1 remove 844,139 + +0.2 844,139 + -1.9 844,141 + +0.9 844,147 - -0.2 844,149 + -3.4 844,149 - +1.5 844,151 + +0.3 844,161 + +1.0 844,222 - -1.1 844,233 + -1.3 844,299 + CSW01_18615 0.13 +0.1 844,335 + CSW01_18615 0.18 +0.1 844,384 + CSW01_18615 0.24 -1.0 844,439 - CSW01_18615 0.31 -1.7 844,450 + CSW01_18615 0.33 -2.1 844,518 - CSW01_18615 0.42 +0.4 844,552 - CSW01_18615 0.47 +2.0 844,579 + CSW01_18615 0.50 +1.6 844,599 + CSW01_18615 0.53 -0.0 844,601 + CSW01_18615 0.53 +0.5 844,607 - CSW01_18615 0.54 -1.8 844,607 - CSW01_18615 0.54 +1.6 844,614 - CSW01_18615 0.55 +1.1 844,624 - CSW01_18615 0.56 +2.0 844,730 - CSW01_18615 0.70 +0.0 844,734 - CSW01_18615 0.71 +0.0 844,746 + CSW01_18615 0.73 +0.2 844,746 + CSW01_18615 0.73 -1.4 844,754 - CSW01_18615 0.74 +0.1 844,790 - CSW01_18615 0.78 +0.0 844,830 + CSW01_18615 0.84 -0.6 844,838 + CSW01_18615 0.85 +1.5 844,888 - -1.4 844,895 + +0.5 844,895 + +0.7 844,913 + -1.7 844,943 + +1.6 844,983 + -0.7 844,983 + +2.2 844,991 - +1.1 844,991 - +1.7 844,991 - +0.7 844,991 - -1.1 844,991 - -1.8 844,991 - +1.1 844,995 + +0.5 844,995 + +1.8 845,004 - +0.3 845,005 - +0.5 845,005 - -1.8 845,010 + -0.1 845,017 + +0.2 845,033 - -0.5 845,033 - -3.3 845,033 - +0.0 845,266 + -0.1 845,285 + -2.3 845,316 - +0.4 845,324 - +0.8 845,367 + +1.6 845,367 + +1.1 845,367 + +0.6 845,367 + +0.1 845,367 + +1.7 845,375 - +0.6 845,375 - +0.7 845,375 - +0.7 845,375 - -0.2 845,375 - +0.0 845,375 - -1.6 845,375 - +1.3 845,406 + +1.2 845,432 + CSW01_18620 0.11 -0.9 845,449 + CSW01_18620 0.11 -0.5 845,457 - CSW01_18620 0.12 -2.7 845,457 - CSW01_18620 0.12 +1.1 845,457 - CSW01_18620 0.12 +0.4 845,586 + CSW01_18620 0.16 +0.0 845,586 + CSW01_18620 0.16 +1.4 845,594 - CSW01_18620 0.16 +0.1 845,756 - CSW01_18620 0.22 +0.6 845,779 + CSW01_18620 0.22 +0.1 845,779 + CSW01_18620 0.22 -0.2 845,780 - CSW01_18620 0.22 +0.3 845,780 - CSW01_18620 0.22 -2.4 845,784 + CSW01_18620 0.23 -2.2 845,792 - CSW01_18620 0.23 +0.2 845,806 + CSW01_18620 0.23 -0.4 845,836 + CSW01_18620 0.24 -1.8 845,844 - CSW01_18620 0.25 +0.5 845,918 + CSW01_18620 0.27 -0.4 845,926 + CSW01_18620 0.27 +1.4 845,926 + CSW01_18620 0.27 -0.9 845,926 + CSW01_18620 0.27 -0.6 845,926 + CSW01_18620 0.27 -0.9 845,932 - CSW01_18620 0.28 -0.9 845,934 - CSW01_18620 0.28 -1.1 845,983 - CSW01_18620 0.29 +2.7 846,004 - CSW01_18620 0.30 +0.4 846,045 + CSW01_18620 0.31 +0.3 846,088 + CSW01_18620 0.33 +0.7 846,120 + CSW01_18620 0.34 -2.8 846,125 + CSW01_18620 0.34 +0.7 846,410 - CSW01_18620 0.44 -0.7 846,468 + CSW01_18620 0.46 -0.2 846,468 + CSW01_18620 0.46 +0.3 846,493 - CSW01_18620 0.47 +0.6 846,513 - CSW01_18620 0.47 -1.8 846,561 + CSW01_18620 0.49 -2.2 846,567 - CSW01_18620 0.49 +1.5 846,604 + CSW01_18620 0.50 +1.0 846,604 + CSW01_18620 0.50 -0.5 846,612 - CSW01_18620 0.51 +1.1 846,633 + CSW01_18620 0.51 -1.2 846,634 - CSW01_18620 0.51 +1.1 846,698 - CSW01_18620 0.54 -0.5 846,700 - CSW01_18620 0.54 -2.1 846,702 + CSW01_18620 0.54 -2.7 846,710 - CSW01_18620 0.54 -0.6 846,710 - CSW01_18620 0.54 +1.9 846,751 - CSW01_18620 0.55 -3.3 846,798 + CSW01_18620 0.57 +1.2 846,934 + CSW01_18620 0.62 -1.9 846,936 + CSW01_18620 0.62 -2.7 846,949 + CSW01_18620 0.62 +1.2 847,030 + CSW01_18620 0.65 +1.6 847,030 + CSW01_18620 0.65 +0.5 847,030 + CSW01_18620 0.65 +0.9 847,038 - CSW01_18620 0.65 -2.1 847,038 - CSW01_18620 0.65 +1.2 847,038 - CSW01_18620 0.65 +0.1 847,038 - CSW01_18620 0.65 +1.5 847,047 + CSW01_18620 0.65 -2.1 847,050 - CSW01_18620 0.66 -1.1 847,155 + CSW01_18620 0.69 +0.9 847,165 + CSW01_18620 0.69 -0.6 847,242 + CSW01_18620 0.72 -1.5 847,301 + CSW01_18620 0.74 -2.3 847,301 + CSW01_18620 0.74 +0.4 847,301 + CSW01_18620 0.74 +0.9 847,301 + CSW01_18620 0.74 +0.5 847,301 + CSW01_18620 0.74 -0.6 847,301 + CSW01_18620 0.74 +0.8 847,309 - CSW01_18620 0.74 -0.9 847,309 - CSW01_18620 0.74 -3.1 847,315 + CSW01_18620 0.75 +1.3 847,328 - CSW01_18620 0.75 -2.4 847,335 - CSW01_18620 0.75 -0.3 847,389 - CSW01_18620 0.77 -1.5 847,411 - CSW01_18620 0.78 -0.6 847,458 - CSW01_18620 0.79 +0.2 847,567 + CSW01_18620 0.83 -0.9 847,570 - CSW01_18620 0.83 -2.5 847,586 + CSW01_18620 0.84 +0.9 847,586 + CSW01_18620 0.84 +1.0 847,586 + CSW01_18620 0.84 +0.8 847,656 + CSW01_18620 0.86 -2.2 847,664 - CSW01_18620 0.86 +1.6 847,665 + CSW01_18620 0.86 -0.6 847,673 - CSW01_18620 0.87 +0.3 847,681 + CSW01_18620 0.87 -1.2 847,786 - -1.8 847,786 - -0.1 847,801 - -1.2 847,821 + -1.4 847,836 - +0.8 847,844 - +0.8 847,861 - -0.3 847,861 - -2.4 847,861 - -1.0 847,890 + +1.1 847,915 + +0.8 847,915 + -0.3 847,915 + +0.8 847,943 + -1.8 847,951 - -1.4 848,107 - +0.2 848,187 + -2.6 848,210 - +1.3 848,340 - -3.1 848,340 - +1.1 848,341 - -2.5 848,468 + -0.2 848,496 + -0.0 848,496 + +0.0 848,496 + -2.4 848,496 + -0.1 848,602 - CSW01_18625 0.13 -0.4 848,604 - CSW01_18625 0.13 +0.4 848,637 - CSW01_18625 0.15 +2.0 848,637 - CSW01_18625 0.15 -0.9 848,662 + CSW01_18625 0.17 -1.2 848,672 + CSW01_18625 0.18 -1.0 848,672 + CSW01_18625 0.18 +0.4 848,680 - CSW01_18625 0.18 -1.3 848,680 - CSW01_18625 0.18 -0.8 848,680 - CSW01_18625 0.18 -0.3 848,721 + CSW01_18625 0.21 -1.0 848,729 - CSW01_18625 0.21 -1.7 848,743 - CSW01_18625 0.22 +0.9 848,745 + CSW01_18625 0.22 +1.6 848,753 - CSW01_18625 0.23 -1.6 848,753 - CSW01_18625 0.23 -1.3 848,753 - CSW01_18625 0.23 +0.7 848,757 + CSW01_18625 0.23 +0.5 848,757 + CSW01_18625 0.23 -0.3 848,765 - CSW01_18625 0.24 -1.0 848,888 + CSW01_18625 0.32 +1.7 848,945 + CSW01_18625 0.36 +1.1 848,996 - CSW01_18625 0.39 -0.1
Or see this region's nucleotide sequence