Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18605

Experiment: ICP3_phage_411_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18600 and CSW01_18605 are separated by 111 nucleotidesCSW01_18605 and CSW01_18610 are separated by 105 nucleotidesCSW01_18610 and CSW01_18615 are separated by 76 nucleotides CSW01_18600: CSW01_18600 - PepSY domain-containing protein, at 841,716 to 843,128 _18600 CSW01_18605: CSW01_18605 - hypothetical protein, at 843,240 to 843,638 _18605 CSW01_18610: CSW01_18610 - cytochrome b562 family protein, at 843,744 to 844,127 _18610 CSW01_18615: CSW01_18615 - phosphatase, at 844,204 to 844,950 _18615 Position (kb) 843 844Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 842.248 kb on - strand, within CSW01_18600at 842.282 kb on + strand, within CSW01_18600at 842.401 kb on + strand, within CSW01_18600at 842.401 kb on + strand, within CSW01_18600at 842.422 kb on + strand, within CSW01_18600at 842.494 kb on + strand, within CSW01_18600at 842.494 kb on + strand, within CSW01_18600at 842.500 kb on - strand, within CSW01_18600at 842.500 kb on - strand, within CSW01_18600at 842.500 kb on - strand, within CSW01_18600at 842.500 kb on - strand, within CSW01_18600at 842.502 kb on - strand, within CSW01_18600at 842.520 kb on - strand, within CSW01_18600at 842.551 kb on + strand, within CSW01_18600at 842.738 kb on + strand, within CSW01_18600at 842.761 kb on - strand, within CSW01_18600at 842.764 kb on - strand, within CSW01_18600at 842.766 kb on + strand, within CSW01_18600at 842.800 kb on + strand, within CSW01_18600at 842.800 kb on + strand, within CSW01_18600at 842.808 kb on - strand, within CSW01_18600at 842.808 kb on - strand, within CSW01_18600at 842.848 kb on + strand, within CSW01_18600at 842.848 kb on + strand, within CSW01_18600at 842.856 kb on - strand, within CSW01_18600at 842.891 kb on - strand, within CSW01_18600at 842.893 kb on + strand, within CSW01_18600at 842.893 kb on + strand, within CSW01_18600at 842.903 kb on + strand, within CSW01_18600at 842.930 kb on + strand, within CSW01_18600at 843.020 kb on - strandat 843.095 kb on - strandat 843.263 kb on + strandat 843.263 kb on + strandat 843.397 kb on + strand, within CSW01_18605at 843.397 kb on + strand, within CSW01_18605at 843.398 kb on + strand, within CSW01_18605at 843.433 kb on + strand, within CSW01_18605at 843.441 kb on - strand, within CSW01_18605at 843.443 kb on + strand, within CSW01_18605at 843.451 kb on - strand, within CSW01_18605at 843.460 kb on + strand, within CSW01_18605at 843.467 kb on + strand, within CSW01_18605at 843.467 kb on + strand, within CSW01_18605at 843.487 kb on + strand, within CSW01_18605at 843.487 kb on + strand, within CSW01_18605at 843.504 kb on + strand, within CSW01_18605at 843.615 kb on + strandat 843.635 kb on + strandat 843.653 kb on - strandat 843.681 kb on + strandat 843.718 kb on + strandat 843.732 kb on + strandat 843.740 kb on - strandat 843.767 kb on - strandat 843.963 kb on + strand, within CSW01_18610at 843.971 kb on - strand, within CSW01_18610at 844.010 kb on + strand, within CSW01_18610at 844.022 kb on + strand, within CSW01_18610at 844.022 kb on + strand, within CSW01_18610at 844.030 kb on - strand, within CSW01_18610at 844.030 kb on - strand, within CSW01_18610at 844.030 kb on - strand, within CSW01_18610at 844.030 kb on - strand, within CSW01_18610at 844.030 kb on - strand, within CSW01_18610at 844.030 kb on - strand, within CSW01_18610at 844.030 kb on - strand, within CSW01_18610at 844.097 kb on - strandat 844.139 kb on + strandat 844.139 kb on + strandat 844.141 kb on + strandat 844.147 kb on - strandat 844.149 kb on + strandat 844.149 kb on - strandat 844.151 kb on + strandat 844.161 kb on + strandat 844.222 kb on - strandat 844.233 kb on + strandat 844.299 kb on + strand, within CSW01_18615at 844.335 kb on + strand, within CSW01_18615at 844.384 kb on + strand, within CSW01_18615at 844.439 kb on - strand, within CSW01_18615at 844.450 kb on + strand, within CSW01_18615at 844.518 kb on - strand, within CSW01_18615at 844.552 kb on - strand, within CSW01_18615at 844.579 kb on + strand, within CSW01_18615at 844.599 kb on + strand, within CSW01_18615at 844.601 kb on + strand, within CSW01_18615at 844.607 kb on - strand, within CSW01_18615at 844.607 kb on - strand, within CSW01_18615at 844.614 kb on - strand, within CSW01_18615at 844.624 kb on - strand, within CSW01_18615

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1
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842,248 - CSW01_18600 0.38 -1.0
842,282 + CSW01_18600 0.40 -1.9
842,401 + CSW01_18600 0.48 +0.2
842,401 + CSW01_18600 0.48 +0.6
842,422 + CSW01_18600 0.50 -0.3
842,494 + CSW01_18600 0.55 -1.6
842,494 + CSW01_18600 0.55 +0.3
842,500 - CSW01_18600 0.55 +0.1
842,500 - CSW01_18600 0.55 +2.0
842,500 - CSW01_18600 0.55 -0.9
842,500 - CSW01_18600 0.55 +0.5
842,502 - CSW01_18600 0.56 -0.2
842,520 - CSW01_18600 0.57 +0.7
842,551 + CSW01_18600 0.59 -0.4
842,738 + CSW01_18600 0.72 +0.4
842,761 - CSW01_18600 0.74 +3.2
842,764 - CSW01_18600 0.74 -2.9
842,766 + CSW01_18600 0.74 +0.6
842,800 + CSW01_18600 0.77 -1.1
842,800 + CSW01_18600 0.77 +1.4
842,808 - CSW01_18600 0.77 -2.0
842,808 - CSW01_18600 0.77 +0.0
842,848 + CSW01_18600 0.80 +0.7
842,848 + CSW01_18600 0.80 +1.8
842,856 - CSW01_18600 0.81 +1.3
842,891 - CSW01_18600 0.83 +0.6
842,893 + CSW01_18600 0.83 -3.4
842,893 + CSW01_18600 0.83 -2.8
842,903 + CSW01_18600 0.84 +0.3
842,930 + CSW01_18600 0.86 -1.0
843,020 - -3.4
843,095 - +1.1
843,263 + -0.5
843,263 + +1.7
843,397 + CSW01_18605 0.39 -2.0
843,397 + CSW01_18605 0.39 -0.1
843,398 + CSW01_18605 0.40 +0.2
843,433 + CSW01_18605 0.48 +0.5
843,441 - CSW01_18605 0.50 -0.9
843,443 + CSW01_18605 0.51 -1.9
843,451 - CSW01_18605 0.53 -2.6
843,460 + CSW01_18605 0.55 -0.7
843,467 + CSW01_18605 0.57 -1.2
843,467 + CSW01_18605 0.57 +1.3
843,487 + CSW01_18605 0.62 +0.9
843,487 + CSW01_18605 0.62 -0.8
843,504 + CSW01_18605 0.66 +1.1
843,615 + -1.1
843,635 + -0.0
843,653 - +1.3
843,681 + +1.4
843,718 + -2.5
843,732 + -1.6
843,740 - -3.0
843,767 - -0.4
843,963 + CSW01_18610 0.57 +0.4
843,971 - CSW01_18610 0.59 +0.3
844,010 + CSW01_18610 0.69 +0.1
844,022 + CSW01_18610 0.72 +0.2
844,022 + CSW01_18610 0.72 +0.8
844,030 - CSW01_18610 0.74 +0.8
844,030 - CSW01_18610 0.74 +0.1
844,030 - CSW01_18610 0.74 -1.5
844,030 - CSW01_18610 0.74 -2.4
844,030 - CSW01_18610 0.74 +0.9
844,030 - CSW01_18610 0.74 -2.2
844,030 - CSW01_18610 0.74 -0.2
844,097 - -0.6
844,139 + +0.2
844,139 + -1.9
844,141 + +0.9
844,147 - -0.2
844,149 + -3.4
844,149 - +1.5
844,151 + +0.3
844,161 + +1.0
844,222 - -1.1
844,233 + -1.3
844,299 + CSW01_18615 0.13 +0.1
844,335 + CSW01_18615 0.18 +0.1
844,384 + CSW01_18615 0.24 -1.0
844,439 - CSW01_18615 0.31 -1.7
844,450 + CSW01_18615 0.33 -2.1
844,518 - CSW01_18615 0.42 +0.4
844,552 - CSW01_18615 0.47 +2.0
844,579 + CSW01_18615 0.50 +1.6
844,599 + CSW01_18615 0.53 -0.0
844,601 + CSW01_18615 0.53 +0.5
844,607 - CSW01_18615 0.54 -1.8
844,607 - CSW01_18615 0.54 +1.6
844,614 - CSW01_18615 0.55 +1.1
844,624 - CSW01_18615 0.56 +2.0

Or see this region's nucleotide sequence