Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17970

Experiment: ICP3_phage_411_MOI_rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_17960 and CSW01_17965 are separated by 52 nucleotidesCSW01_17965 and CSW01_17970 overlap by 4 nucleotidesCSW01_17970 and CSW01_17975 are separated by 1 nucleotidesCSW01_17975 and CSW01_17980 are separated by 73 nucleotides CSW01_17960: CSW01_17960 - LysR family transcriptional regulator, at 698,823 to 699,728 _17960 CSW01_17965: CSW01_17965 - arginine transporter permease subunit ArtM, at 699,781 to 700,449 _17965 CSW01_17970: CSW01_17970 - ABC transporter, at 700,446 to 701,135 _17970 CSW01_17975: CSW01_17975 - arginine ABC transporter substrate-binding protein, at 701,137 to 701,868 _17975 CSW01_17980: CSW01_17980 - arginine ABC transporter ATP-binding protein ArtP, at 701,942 to 702,670 _17980 Position (kb) 700 701 702Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 699.464 kb on - strand, within CSW01_17960at 699.464 kb on - strand, within CSW01_17960at 699.531 kb on + strand, within CSW01_17960at 699.531 kb on + strand, within CSW01_17960at 699.532 kb on + strand, within CSW01_17960at 699.539 kb on - strand, within CSW01_17960at 699.540 kb on - strand, within CSW01_17960at 699.559 kb on - strand, within CSW01_17960at 699.640 kb on - strandat 699.705 kb on + strandat 699.768 kb on - strandat 699.779 kb on + strandat 699.882 kb on - strand, within CSW01_17965at 699.963 kb on - strand, within CSW01_17965at 699.963 kb on - strand, within CSW01_17965at 699.963 kb on - strand, within CSW01_17965at 699.968 kb on - strand, within CSW01_17965at 700.005 kb on + strand, within CSW01_17965at 700.022 kb on + strand, within CSW01_17965at 700.035 kb on - strand, within CSW01_17965at 700.115 kb on + strand, within CSW01_17965at 700.123 kb on - strand, within CSW01_17965at 700.148 kb on - strand, within CSW01_17965at 700.220 kb on + strand, within CSW01_17965at 700.228 kb on - strand, within CSW01_17965at 700.230 kb on + strand, within CSW01_17965at 700.230 kb on + strand, within CSW01_17965at 700.230 kb on + strand, within CSW01_17965at 700.230 kb on + strand, within CSW01_17965at 700.238 kb on - strand, within CSW01_17965at 700.238 kb on - strand, within CSW01_17965at 700.238 kb on - strand, within CSW01_17965at 700.288 kb on + strand, within CSW01_17965at 700.296 kb on - strand, within CSW01_17965at 700.301 kb on + strand, within CSW01_17965at 700.302 kb on + strand, within CSW01_17965at 700.332 kb on + strand, within CSW01_17965at 700.339 kb on + strand, within CSW01_17965at 700.339 kb on + strand, within CSW01_17965at 700.339 kb on + strand, within CSW01_17965at 700.348 kb on + strand, within CSW01_17965at 700.354 kb on - strand, within CSW01_17965at 700.403 kb on - strandat 700.455 kb on + strandat 700.553 kb on - strand, within CSW01_17970at 700.575 kb on + strand, within CSW01_17970at 700.597 kb on - strand, within CSW01_17970at 700.602 kb on - strand, within CSW01_17970at 700.686 kb on + strand, within CSW01_17970at 700.694 kb on + strand, within CSW01_17970at 700.708 kb on + strand, within CSW01_17970at 700.713 kb on + strand, within CSW01_17970at 700.768 kb on + strand, within CSW01_17970at 700.778 kb on + strand, within CSW01_17970at 700.778 kb on + strand, within CSW01_17970at 700.786 kb on - strand, within CSW01_17970at 700.786 kb on - strand, within CSW01_17970at 700.800 kb on - strand, within CSW01_17970at 700.812 kb on + strand, within CSW01_17970at 700.922 kb on - strand, within CSW01_17970at 701.106 kb on - strandat 701.108 kb on + strandat 701.118 kb on - strandat 701.124 kb on - strandat 701.200 kb on - strandat 701.204 kb on + strandat 701.204 kb on + strandat 701.204 kb on + strandat 701.204 kb on + strandat 701.212 kb on - strand, within CSW01_17975at 701.221 kb on - strand, within CSW01_17975at 701.316 kb on - strand, within CSW01_17975at 701.318 kb on + strand, within CSW01_17975at 701.319 kb on + strand, within CSW01_17975at 701.326 kb on - strand, within CSW01_17975at 701.418 kb on - strand, within CSW01_17975at 701.502 kb on - strand, within CSW01_17975at 701.580 kb on + strand, within CSW01_17975at 701.588 kb on - strand, within CSW01_17975at 701.653 kb on - strand, within CSW01_17975at 701.659 kb on + strand, within CSW01_17975at 701.735 kb on + strand, within CSW01_17975at 701.757 kb on - strand, within CSW01_17975at 701.761 kb on + strand, within CSW01_17975at 701.875 kb on + strandat 701.904 kb on + strandat 701.947 kb on + strandat 701.947 kb on + strandat 701.955 kb on - strandat 701.992 kb on - strandat 701.996 kb on - strandat 702.005 kb on + strandat 702.005 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1
remove
699,464 - CSW01_17960 0.71 -0.5
699,464 - CSW01_17960 0.71 -3.6
699,531 + CSW01_17960 0.78 -0.4
699,531 + CSW01_17960 0.78 -3.2
699,532 + CSW01_17960 0.78 +1.8
699,539 - CSW01_17960 0.79 +0.6
699,540 - CSW01_17960 0.79 -0.3
699,559 - CSW01_17960 0.81 -0.5
699,640 - +0.8
699,705 + +0.6
699,768 - +0.2
699,779 + -0.1
699,882 - CSW01_17965 0.15 -1.2
699,963 - CSW01_17965 0.27 -1.2
699,963 - CSW01_17965 0.27 +1.0
699,963 - CSW01_17965 0.27 -2.3
699,968 - CSW01_17965 0.28 -0.0
700,005 + CSW01_17965 0.33 -0.1
700,022 + CSW01_17965 0.36 -0.0
700,035 - CSW01_17965 0.38 +1.4
700,115 + CSW01_17965 0.50 -2.1
700,123 - CSW01_17965 0.51 +2.0
700,148 - CSW01_17965 0.55 +0.1
700,220 + CSW01_17965 0.66 +0.8
700,228 - CSW01_17965 0.67 +0.7
700,230 + CSW01_17965 0.67 -2.2
700,230 + CSW01_17965 0.67 +0.6
700,230 + CSW01_17965 0.67 -1.2
700,230 + CSW01_17965 0.67 -0.2
700,238 - CSW01_17965 0.68 -0.9
700,238 - CSW01_17965 0.68 +0.6
700,238 - CSW01_17965 0.68 -2.9
700,288 + CSW01_17965 0.76 -1.6
700,296 - CSW01_17965 0.77 -0.3
700,301 + CSW01_17965 0.78 -1.0
700,302 + CSW01_17965 0.78 -1.2
700,332 + CSW01_17965 0.82 +1.1
700,339 + CSW01_17965 0.83 +1.4
700,339 + CSW01_17965 0.83 +0.5
700,339 + CSW01_17965 0.83 +0.4
700,348 + CSW01_17965 0.85 -1.9
700,354 - CSW01_17965 0.86 -2.2
700,403 - +1.0
700,455 + -1.2
700,553 - CSW01_17970 0.16 -1.4
700,575 + CSW01_17970 0.19 +1.0
700,597 - CSW01_17970 0.22 -2.4
700,602 - CSW01_17970 0.23 -1.9
700,686 + CSW01_17970 0.35 -1.0
700,694 + CSW01_17970 0.36 +0.4
700,708 + CSW01_17970 0.38 +0.2
700,713 + CSW01_17970 0.39 -2.6
700,768 + CSW01_17970 0.47 +0.2
700,778 + CSW01_17970 0.48 +1.9
700,778 + CSW01_17970 0.48 -0.1
700,786 - CSW01_17970 0.49 -2.1
700,786 - CSW01_17970 0.49 -1.6
700,800 - CSW01_17970 0.51 +0.2
700,812 + CSW01_17970 0.53 +1.3
700,922 - CSW01_17970 0.69 -0.2
701,106 - +2.1
701,108 + -1.1
701,118 - +1.2
701,124 - +0.5
701,200 - -2.6
701,204 + +1.1
701,204 + -0.1
701,204 + -0.1
701,204 + +0.3
701,212 - CSW01_17975 0.10 -3.6
701,221 - CSW01_17975 0.11 -0.8
701,316 - CSW01_17975 0.24 +0.1
701,318 + CSW01_17975 0.25 -0.3
701,319 + CSW01_17975 0.25 +1.6
701,326 - CSW01_17975 0.26 -0.7
701,418 - CSW01_17975 0.38 +0.1
701,502 - CSW01_17975 0.50 -2.1
701,580 + CSW01_17975 0.61 +0.0
701,588 - CSW01_17975 0.62 +0.0
701,653 - CSW01_17975 0.70 -2.3
701,659 + CSW01_17975 0.71 -1.7
701,735 + CSW01_17975 0.82 -1.0
701,757 - CSW01_17975 0.85 -0.9
701,761 + CSW01_17975 0.85 +0.5
701,875 + -0.0
701,904 + -2.3
701,947 + +0.4
701,947 + -1.1
701,955 - +0.5
701,992 - -0.3
701,996 - -0.8
702,005 + -0.7
702,005 + +0.5

Or see this region's nucleotide sequence