Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17845

Experiment: ICP3_phage_411_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17830 and CSW01_17835 are separated by 202 nucleotidesCSW01_17835 and CSW01_17840 are separated by 40 nucleotidesCSW01_17840 and CSW01_17845 are separated by 37 nucleotidesCSW01_17845 and CSW01_17850 are separated by 198 nucleotidesCSW01_17850 and CSW01_17855 overlap by 9 nucleotides CSW01_17830: CSW01_17830 - hypothetical protein, at 676,078 to 676,383 _17830 CSW01_17835: CSW01_17835 - hypothetical protein, at 676,586 to 676,984 _17835 CSW01_17840: CSW01_17840 - hypothetical protein, at 677,025 to 677,177 _17840 CSW01_17845: CSW01_17845 - hypothetical protein, at 677,215 to 677,754 _17845 CSW01_17850: CSW01_17850 - flagellar brake protein, at 677,953 to 678,663 _17850 CSW01_17855: CSW01_17855 - autoinducer 2 sensor kinase/phosphatase LuxQ, at 678,655 to 681,228 _17855 Position (kb) 677 678Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 676.241 kb on + strand, within CSW01_17830at 676.273 kb on + strand, within CSW01_17830at 676.275 kb on - strand, within CSW01_17830at 676.415 kb on + strandat 676.531 kb on + strandat 676.531 kb on + strandat 676.539 kb on - strandat 676.764 kb on + strand, within CSW01_17835at 676.824 kb on + strand, within CSW01_17835at 676.832 kb on - strand, within CSW01_17835at 676.905 kb on + strand, within CSW01_17835at 676.998 kb on - strandat 677.117 kb on - strand, within CSW01_17840at 677.270 kb on + strand, within CSW01_17845at 677.270 kb on + strand, within CSW01_17845at 677.270 kb on + strand, within CSW01_17845at 677.278 kb on - strand, within CSW01_17845at 677.278 kb on - strand, within CSW01_17845at 677.285 kb on + strand, within CSW01_17845at 677.293 kb on - strand, within CSW01_17845at 677.293 kb on - strand, within CSW01_17845at 677.357 kb on + strand, within CSW01_17845at 677.503 kb on + strand, within CSW01_17845at 677.527 kb on + strand, within CSW01_17845at 677.572 kb on - strand, within CSW01_17845at 677.677 kb on - strand, within CSW01_17845at 677.687 kb on + strand, within CSW01_17845at 677.687 kb on + strand, within CSW01_17845at 677.695 kb on - strand, within CSW01_17845at 677.748 kb on + strandat 677.748 kb on + strandat 677.805 kb on - strandat 677.810 kb on - strandat 677.832 kb on + strandat 677.840 kb on - strandat 677.941 kb on - strandat 677.953 kb on + strandat 677.953 kb on - strandat 677.961 kb on - strandat 678.080 kb on + strand, within CSW01_17850at 678.088 kb on - strand, within CSW01_17850at 678.166 kb on + strand, within CSW01_17850at 678.218 kb on + strand, within CSW01_17850at 678.273 kb on + strand, within CSW01_17850at 678.278 kb on + strand, within CSW01_17850at 678.286 kb on - strand, within CSW01_17850at 678.286 kb on - strand, within CSW01_17850at 678.286 kb on - strand, within CSW01_17850at 678.286 kb on - strand, within CSW01_17850at 678.287 kb on - strand, within CSW01_17850at 678.468 kb on + strand, within CSW01_17850at 678.476 kb on + strand, within CSW01_17850

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1
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676,241 + CSW01_17830 0.53 -0.6
676,273 + CSW01_17830 0.64 +0.8
676,275 - CSW01_17830 0.64 -0.8
676,415 + +0.5
676,531 + -1.6
676,531 + -3.0
676,539 - -0.7
676,764 + CSW01_17835 0.45 -1.8
676,824 + CSW01_17835 0.60 -2.5
676,832 - CSW01_17835 0.62 -1.6
676,905 + CSW01_17835 0.80 +0.4
676,998 - +1.0
677,117 - CSW01_17840 0.60 -1.2
677,270 + CSW01_17845 0.10 +1.3
677,270 + CSW01_17845 0.10 +1.1
677,270 + CSW01_17845 0.10 -2.8
677,278 - CSW01_17845 0.12 -0.6
677,278 - CSW01_17845 0.12 -0.5
677,285 + CSW01_17845 0.13 -2.2
677,293 - CSW01_17845 0.14 +0.3
677,293 - CSW01_17845 0.14 +1.0
677,357 + CSW01_17845 0.26 -1.8
677,503 + CSW01_17845 0.53 -1.8
677,527 + CSW01_17845 0.58 +0.7
677,572 - CSW01_17845 0.66 +0.1
677,677 - CSW01_17845 0.86 -2.7
677,687 + CSW01_17845 0.87 +0.2
677,687 + CSW01_17845 0.87 +0.7
677,695 - CSW01_17845 0.89 -2.5
677,748 + -0.5
677,748 + +0.2
677,805 - +3.3
677,810 - +0.4
677,832 + +0.3
677,840 - -0.1
677,941 - +0.0
677,953 + -0.1
677,953 - +0.7
677,961 - +1.3
678,080 + CSW01_17850 0.18 +0.1
678,088 - CSW01_17850 0.19 -0.2
678,166 + CSW01_17850 0.30 -0.9
678,218 + CSW01_17850 0.37 -2.1
678,273 + CSW01_17850 0.45 +0.1
678,278 + CSW01_17850 0.46 -1.7
678,286 - CSW01_17850 0.47 -1.1
678,286 - CSW01_17850 0.47 -0.7
678,286 - CSW01_17850 0.47 -0.1
678,286 - CSW01_17850 0.47 +0.1
678,287 - CSW01_17850 0.47 -0.9
678,468 + CSW01_17850 0.72 -2.0
678,476 + CSW01_17850 0.74 +0.5

Or see this region's nucleotide sequence