Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17815

Experiment: ICP3_phage_411_MOI_rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_17810 and CSW01_17815 are separated by 602 nucleotidesCSW01_17815 and CSW01_17820 overlap by 8 nucleotidesCSW01_17820 and CSW01_17825 are separated by 2 nucleotides CSW01_17810: CSW01_17810 - cobyric acid synthase CobQ, at 668,703 to 670,157 _17810 CSW01_17815: CSW01_17815 - recombinase RecF, at 670,760 to 672,931 _17815 CSW01_17820: CSW01_17820 - hypothetical protein, at 672,924 to 673,547 _17820 CSW01_17825: CSW01_17825 - hypothetical protein, at 673,550 to 675,379 _17825 Position (kb) 670 671 672 673Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 669.850 kb on + strand, within CSW01_17810at 669.931 kb on + strand, within CSW01_17810at 669.939 kb on - strand, within CSW01_17810at 669.945 kb on + strand, within CSW01_17810at 669.950 kb on + strand, within CSW01_17810at 669.958 kb on - strand, within CSW01_17810at 669.971 kb on - strand, within CSW01_17810at 670.012 kb on - strandat 670.023 kb on + strandat 670.031 kb on - strandat 670.051 kb on + strandat 670.082 kb on - strandat 670.118 kb on + strandat 670.118 kb on + strandat 670.126 kb on - strandat 670.126 kb on - strandat 670.190 kb on + strandat 670.215 kb on + strandat 670.263 kb on + strandat 670.271 kb on - strandat 670.319 kb on - strandat 670.348 kb on - strandat 670.671 kb on - strandat 670.720 kb on + strandat 670.720 kb on + strandat 670.728 kb on - strandat 670.728 kb on - strandat 670.774 kb on - strandat 671.007 kb on - strand, within CSW01_17815at 671.055 kb on + strand, within CSW01_17815at 671.182 kb on - strand, within CSW01_17815at 671.323 kb on + strand, within CSW01_17815at 671.330 kb on - strand, within CSW01_17815at 671.421 kb on - strand, within CSW01_17815at 671.421 kb on - strand, within CSW01_17815at 671.535 kb on - strand, within CSW01_17815at 671.540 kb on - strand, within CSW01_17815at 671.618 kb on + strand, within CSW01_17815at 671.664 kb on + strand, within CSW01_17815at 671.854 kb on + strand, within CSW01_17815at 671.872 kb on - strand, within CSW01_17815at 671.919 kb on + strand, within CSW01_17815at 671.919 kb on + strand, within CSW01_17815at 671.976 kb on - strand, within CSW01_17815at 672.123 kb on - strand, within CSW01_17815at 672.141 kb on + strand, within CSW01_17815at 672.234 kb on - strand, within CSW01_17815at 672.346 kb on - strand, within CSW01_17815at 672.354 kb on + strand, within CSW01_17815at 672.639 kb on + strand, within CSW01_17815at 672.639 kb on + strand, within CSW01_17815at 672.647 kb on - strand, within CSW01_17815at 672.647 kb on - strand, within CSW01_17815at 672.658 kb on + strand, within CSW01_17815at 672.666 kb on - strand, within CSW01_17815at 672.700 kb on + strand, within CSW01_17815at 672.737 kb on - strandat 672.999 kb on + strand, within CSW01_17820at 672.999 kb on + strand, within CSW01_17820at 672.999 kb on + strand, within CSW01_17820at 673.142 kb on + strand, within CSW01_17820at 673.181 kb on + strand, within CSW01_17820at 673.276 kb on + strand, within CSW01_17820at 673.276 kb on + strand, within CSW01_17820at 673.276 kb on + strand, within CSW01_17820at 673.284 kb on - strand, within CSW01_17820at 673.486 kb on + strandat 673.486 kb on + strandat 673.515 kb on - strandat 673.517 kb on + strandat 673.525 kb on - strandat 673.581 kb on + strandat 673.755 kb on + strand, within CSW01_17825at 673.773 kb on - strand, within CSW01_17825at 673.800 kb on - strand, within CSW01_17825at 673.800 kb on - strand, within CSW01_17825at 673.800 kb on - strand, within CSW01_17825at 673.800 kb on - strand, within CSW01_17825

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1
remove
669,850 + CSW01_17810 0.79 -2.4
669,931 + CSW01_17810 0.84 -0.8
669,939 - CSW01_17810 0.85 -0.1
669,945 + CSW01_17810 0.85 -0.5
669,950 + CSW01_17810 0.86 -1.9
669,958 - CSW01_17810 0.86 -0.1
669,971 - CSW01_17810 0.87 +1.2
670,012 - +0.4
670,023 + +1.0
670,031 - -0.6
670,051 + -1.4
670,082 - +0.2
670,118 + +1.8
670,118 + +0.5
670,126 - +1.0
670,126 - +0.8
670,190 + +1.0
670,215 + -0.2
670,263 + -1.0
670,271 - +1.7
670,319 - -0.2
670,348 - +0.8
670,671 - -0.6
670,720 + +0.8
670,720 + -0.0
670,728 - -0.8
670,728 - +0.3
670,774 - -1.3
671,007 - CSW01_17815 0.11 -1.1
671,055 + CSW01_17815 0.14 +0.1
671,182 - CSW01_17815 0.19 -0.9
671,323 + CSW01_17815 0.26 +0.3
671,330 - CSW01_17815 0.26 -0.4
671,421 - CSW01_17815 0.30 -3.1
671,421 - CSW01_17815 0.30 -0.6
671,535 - CSW01_17815 0.36 +1.1
671,540 - CSW01_17815 0.36 -0.1
671,618 + CSW01_17815 0.40 +1.3
671,664 + CSW01_17815 0.42 +1.0
671,854 + CSW01_17815 0.50 -2.6
671,872 - CSW01_17815 0.51 -3.1
671,919 + CSW01_17815 0.53 -1.4
671,919 + CSW01_17815 0.53 -3.3
671,976 - CSW01_17815 0.56 -1.2
672,123 - CSW01_17815 0.63 +0.9
672,141 + CSW01_17815 0.64 -2.1
672,234 - CSW01_17815 0.68 -0.8
672,346 - CSW01_17815 0.73 -0.8
672,354 + CSW01_17815 0.73 +1.2
672,639 + CSW01_17815 0.87 -2.1
672,639 + CSW01_17815 0.87 +0.6
672,647 - CSW01_17815 0.87 +0.9
672,647 - CSW01_17815 0.87 -1.2
672,658 + CSW01_17815 0.87 -0.1
672,666 - CSW01_17815 0.88 -1.4
672,700 + CSW01_17815 0.89 -0.5
672,737 - -1.6
672,999 + CSW01_17820 0.12 -0.2
672,999 + CSW01_17820 0.12 +1.5
672,999 + CSW01_17820 0.12 +0.4
673,142 + CSW01_17820 0.35 -0.4
673,181 + CSW01_17820 0.41 -1.5
673,276 + CSW01_17820 0.56 -1.1
673,276 + CSW01_17820 0.56 -0.0
673,276 + CSW01_17820 0.56 +1.7
673,284 - CSW01_17820 0.58 +0.0
673,486 + -0.3
673,486 + +1.0
673,515 - +0.4
673,517 + +0.1
673,525 - -0.8
673,581 + +0.3
673,755 + CSW01_17825 0.11 +0.1
673,773 - CSW01_17825 0.12 +0.0
673,800 - CSW01_17825 0.14 +0.3
673,800 - CSW01_17825 0.14 -0.6
673,800 - CSW01_17825 0.14 +0.5
673,800 - CSW01_17825 0.14 +0.0

Or see this region's nucleotide sequence