Experiment: ICP3_phage_411_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17505 and CSW01_17510 are separated by 212 nucleotides CSW01_17510 and CSW01_17515 are separated by 80 nucleotides CSW01_17515 and CSW01_17520 are separated by 146 nucleotides
CSW01_17505: CSW01_17505 - hypothetical protein, at 594,562 to 595,185
_17505
CSW01_17510: CSW01_17510 - peptidylprolyl isomerase, at 595,398 to 595,871
_17510
CSW01_17515: CSW01_17515 - beta-phosphoglucomutase family hydrolase, at 595,952 to 596,590
_17515
CSW01_17520: CSW01_17520 - methyl-accepting chemotaxis protein, at 596,737 to 598,500
_17520
Position (kb) 595
596 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 594.407 kb on + strand at 594.415 kb on - strand at 594.456 kb on - strand at 594.591 kb on + strand at 594.694 kb on - strand, within CSW01_17505 at 594.753 kb on + strand, within CSW01_17505 at 594.799 kb on + strand, within CSW01_17505 at 594.898 kb on - strand, within CSW01_17505 at 595.005 kb on - strand, within CSW01_17505 at 595.011 kb on + strand, within CSW01_17505 at 595.014 kb on + strand, within CSW01_17505 at 595.037 kb on + strand, within CSW01_17505 at 595.045 kb on - strand, within CSW01_17505 at 595.052 kb on + strand, within CSW01_17505 at 595.126 kb on - strand at 595.359 kb on - strand at 595.467 kb on + strand, within CSW01_17510 at 595.753 kb on - strand, within CSW01_17510 at 595.812 kb on + strand, within CSW01_17510 at 595.840 kb on + strand at 595.872 kb on + strand at 596.071 kb on + strand, within CSW01_17515 at 596.073 kb on - strand, within CSW01_17515 at 596.126 kb on - strand, within CSW01_17515 at 596.248 kb on + strand, within CSW01_17515 at 596.304 kb on - strand, within CSW01_17515 at 596.412 kb on - strand, within CSW01_17515 at 596.498 kb on - strand, within CSW01_17515 at 596.544 kb on - strand at 596.654 kb on + strand at 596.684 kb on + strand at 596.807 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1 remove 594,407 + +0.0 594,415 - +1.0 594,456 - +1.1 594,591 + -2.2 594,694 - CSW01_17505 0.21 -1.7 594,753 + CSW01_17505 0.31 +0.2 594,799 + CSW01_17505 0.38 -2.1 594,898 - CSW01_17505 0.54 +0.4 595,005 - CSW01_17505 0.71 +1.2 595,011 + CSW01_17505 0.72 -3.0 595,014 + CSW01_17505 0.72 -2.1 595,037 + CSW01_17505 0.76 +1.5 595,045 - CSW01_17505 0.77 -0.8 595,052 + CSW01_17505 0.79 +1.5 595,126 - +0.5 595,359 - +1.9 595,467 + CSW01_17510 0.15 +0.7 595,753 - CSW01_17510 0.75 +0.4 595,812 + CSW01_17510 0.87 -1.5 595,840 + +0.3 595,872 + -0.3 596,071 + CSW01_17515 0.19 -0.5 596,073 - CSW01_17515 0.19 +0.2 596,126 - CSW01_17515 0.27 -1.7 596,248 + CSW01_17515 0.46 -1.6 596,304 - CSW01_17515 0.55 +1.2 596,412 - CSW01_17515 0.72 +2.9 596,498 - CSW01_17515 0.85 -1.6 596,544 - -1.1 596,654 + -2.6 596,684 + -1.6 596,807 + -0.6
Or see this region's nucleotide sequence