Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17405

Experiment: ICP3_phage_411_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17400 and CSW01_17405 overlap by 44 nucleotidesCSW01_17405 and CSW01_17410 are separated by 109 nucleotidesCSW01_17410 and CSW01_17415 are separated by 4 nucleotides CSW01_17400: CSW01_17400 - AcrB/AcrD/AcrF family protein, at 570,873 to 574,076 _17400 CSW01_17405: CSW01_17405 - efflux RND transporter periplasmic adaptor subunit, at 574,033 to 575,037 _17405 CSW01_17410: CSW01_17410 - transporter, at 575,147 to 575,611 _17410 CSW01_17415: CSW01_17415 - hypothetical protein, at 575,616 to 576,035 _17415 Position (kb) 574 575 576Strain fitness (log2 ratio) -2 -1 0 1 2at 573.078 kb on + strand, within CSW01_17400at 573.078 kb on + strand, within CSW01_17400at 573.140 kb on + strand, within CSW01_17400at 573.148 kb on - strand, within CSW01_17400at 573.148 kb on - strand, within CSW01_17400at 573.148 kb on - strand, within CSW01_17400at 573.253 kb on + strand, within CSW01_17400at 573.253 kb on + strand, within CSW01_17400at 573.268 kb on + strand, within CSW01_17400at 573.298 kb on + strand, within CSW01_17400at 573.298 kb on + strand, within CSW01_17400at 573.306 kb on - strand, within CSW01_17400at 573.306 kb on - strand, within CSW01_17400at 573.353 kb on + strand, within CSW01_17400at 573.398 kb on + strand, within CSW01_17400at 573.398 kb on + strand, within CSW01_17400at 573.398 kb on + strand, within CSW01_17400at 573.410 kb on + strand, within CSW01_17400at 573.410 kb on + strand, within CSW01_17400at 573.482 kb on - strand, within CSW01_17400at 573.502 kb on + strand, within CSW01_17400at 573.638 kb on + strand, within CSW01_17400at 573.640 kb on - strand, within CSW01_17400at 573.646 kb on - strand, within CSW01_17400at 573.646 kb on - strand, within CSW01_17400at 573.721 kb on + strand, within CSW01_17400at 573.801 kb on + strandat 573.828 kb on + strandat 574.057 kb on - strandat 574.112 kb on + strandat 574.112 kb on + strandat 574.112 kb on + strandat 574.112 kb on + strandat 574.112 kb on + strandat 574.120 kb on - strandat 574.120 kb on - strandat 574.120 kb on - strandat 574.131 kb on + strandat 574.180 kb on + strand, within CSW01_17405at 574.192 kb on + strand, within CSW01_17405at 574.192 kb on + strand, within CSW01_17405at 574.192 kb on + strand, within CSW01_17405at 574.192 kb on + strand, within CSW01_17405at 574.192 kb on + strand, within CSW01_17405at 574.200 kb on - strand, within CSW01_17405at 574.200 kb on - strand, within CSW01_17405at 574.200 kb on - strand, within CSW01_17405at 574.200 kb on - strand, within CSW01_17405at 574.200 kb on - strand, within CSW01_17405at 574.200 kb on - strand, within CSW01_17405at 574.200 kb on - strand, within CSW01_17405at 574.200 kb on - strand, within CSW01_17405at 574.200 kb on - strand, within CSW01_17405at 574.207 kb on + strand, within CSW01_17405at 574.220 kb on - strand, within CSW01_17405at 574.241 kb on - strand, within CSW01_17405at 574.307 kb on + strand, within CSW01_17405at 574.361 kb on + strand, within CSW01_17405at 574.369 kb on - strand, within CSW01_17405at 574.430 kb on - strand, within CSW01_17405at 574.497 kb on + strand, within CSW01_17405at 574.505 kb on + strand, within CSW01_17405at 574.525 kb on + strand, within CSW01_17405at 574.538 kb on - strand, within CSW01_17405at 574.538 kb on - strand, within CSW01_17405at 574.553 kb on - strand, within CSW01_17405at 574.563 kb on + strand, within CSW01_17405at 574.607 kb on + strand, within CSW01_17405at 574.703 kb on + strand, within CSW01_17405at 574.711 kb on - strand, within CSW01_17405at 574.863 kb on + strand, within CSW01_17405at 574.871 kb on - strand, within CSW01_17405at 574.903 kb on + strand, within CSW01_17405at 574.905 kb on + strand, within CSW01_17405at 574.913 kb on - strand, within CSW01_17405at 574.913 kb on - strand, within CSW01_17405at 574.913 kb on - strand, within CSW01_17405at 574.913 kb on - strand, within CSW01_17405at 574.980 kb on - strandat 575.110 kb on - strandat 575.126 kb on - strandat 575.136 kb on - strandat 575.394 kb on + strand, within CSW01_17410at 575.402 kb on - strand, within CSW01_17410at 575.476 kb on + strand, within CSW01_17410at 575.484 kb on - strand, within CSW01_17410at 575.632 kb on - strandat 575.634 kb on + strandat 575.667 kb on + strand, within CSW01_17415at 575.774 kb on - strand, within CSW01_17415at 575.809 kb on - strand, within CSW01_17415at 575.827 kb on - strand, within CSW01_17415at 575.834 kb on + strand, within CSW01_17415at 575.835 kb on - strand, within CSW01_17415at 575.842 kb on - strand, within CSW01_17415at 575.842 kb on - strand, within CSW01_17415at 575.842 kb on - strand, within CSW01_17415at 575.844 kb on + strand, within CSW01_17415at 575.844 kb on + strand, within CSW01_17415at 575.844 kb on + strand, within CSW01_17415at 575.985 kb on - strand, within CSW01_17415at 576.001 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1
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573,078 + CSW01_17400 0.69 +0.2
573,078 + CSW01_17400 0.69 -1.3
573,140 + CSW01_17400 0.71 -1.2
573,148 - CSW01_17400 0.71 +0.9
573,148 - CSW01_17400 0.71 +1.6
573,148 - CSW01_17400 0.71 -1.0
573,253 + CSW01_17400 0.74 +0.3
573,253 + CSW01_17400 0.74 +0.1
573,268 + CSW01_17400 0.75 +2.3
573,298 + CSW01_17400 0.76 -2.3
573,298 + CSW01_17400 0.76 +0.9
573,306 - CSW01_17400 0.76 -2.4
573,306 - CSW01_17400 0.76 -0.0
573,353 + CSW01_17400 0.77 +0.7
573,398 + CSW01_17400 0.79 -0.5
573,398 + CSW01_17400 0.79 +1.1
573,398 + CSW01_17400 0.79 +1.2
573,410 + CSW01_17400 0.79 +0.3
573,410 + CSW01_17400 0.79 +0.1
573,482 - CSW01_17400 0.81 +1.1
573,502 + CSW01_17400 0.82 -1.2
573,638 + CSW01_17400 0.86 +1.1
573,640 - CSW01_17400 0.86 +1.1
573,646 - CSW01_17400 0.87 -0.3
573,646 - CSW01_17400 0.87 -0.4
573,721 + CSW01_17400 0.89 -0.4
573,801 + +0.7
573,828 + +1.7
574,057 - -1.9
574,112 + -0.0
574,112 + -1.0
574,112 + +0.2
574,112 + -1.0
574,112 + +2.1
574,120 - +1.6
574,120 - -2.4
574,120 - -0.4
574,131 + -0.7
574,180 + CSW01_17405 0.15 -0.2
574,192 + CSW01_17405 0.16 +1.1
574,192 + CSW01_17405 0.16 -1.2
574,192 + CSW01_17405 0.16 +0.6
574,192 + CSW01_17405 0.16 +0.1
574,192 + CSW01_17405 0.16 -0.3
574,200 - CSW01_17405 0.17 -0.5
574,200 - CSW01_17405 0.17 +1.8
574,200 - CSW01_17405 0.17 +0.6
574,200 - CSW01_17405 0.17 -2.0
574,200 - CSW01_17405 0.17 -1.3
574,200 - CSW01_17405 0.17 -2.2
574,200 - CSW01_17405 0.17 -0.3
574,200 - CSW01_17405 0.17 -0.4
574,200 - CSW01_17405 0.17 -0.8
574,207 + CSW01_17405 0.17 -1.5
574,220 - CSW01_17405 0.19 +1.1
574,241 - CSW01_17405 0.21 +0.8
574,307 + CSW01_17405 0.27 -2.4
574,361 + CSW01_17405 0.33 -1.8
574,369 - CSW01_17405 0.33 -0.8
574,430 - CSW01_17405 0.40 +0.3
574,497 + CSW01_17405 0.46 -0.3
574,505 + CSW01_17405 0.47 -2.1
574,525 + CSW01_17405 0.49 +0.7
574,538 - CSW01_17405 0.50 -2.2
574,538 - CSW01_17405 0.50 -2.5
574,553 - CSW01_17405 0.52 -0.4
574,563 + CSW01_17405 0.53 -0.0
574,607 + CSW01_17405 0.57 -0.2
574,703 + CSW01_17405 0.67 -0.6
574,711 - CSW01_17405 0.67 +0.1
574,863 + CSW01_17405 0.83 +0.1
574,871 - CSW01_17405 0.83 -0.7
574,903 + CSW01_17405 0.87 -2.7
574,905 + CSW01_17405 0.87 +0.8
574,913 - CSW01_17405 0.88 +1.1
574,913 - CSW01_17405 0.88 -1.6
574,913 - CSW01_17405 0.88 +0.1
574,913 - CSW01_17405 0.88 -2.6
574,980 - -1.2
575,110 - -1.5
575,126 - -1.0
575,136 - -1.2
575,394 + CSW01_17410 0.53 +1.1
575,402 - CSW01_17410 0.55 -1.3
575,476 + CSW01_17410 0.71 +0.9
575,484 - CSW01_17410 0.72 +0.9
575,632 - +0.8
575,634 + -0.0
575,667 + CSW01_17415 0.12 +0.2
575,774 - CSW01_17415 0.38 -0.3
575,809 - CSW01_17415 0.46 -0.3
575,827 - CSW01_17415 0.50 -0.1
575,834 + CSW01_17415 0.52 +0.3
575,835 - CSW01_17415 0.52 -0.7
575,842 - CSW01_17415 0.54 -1.0
575,842 - CSW01_17415 0.54 +0.4
575,842 - CSW01_17415 0.54 +1.2
575,844 + CSW01_17415 0.54 -2.2
575,844 + CSW01_17415 0.54 -1.3
575,844 + CSW01_17415 0.54 +1.7
575,985 - CSW01_17415 0.88 -0.2
576,001 - +0.6

Or see this region's nucleotide sequence