Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17375

Experiment: ICP3_phage_411_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17365 and CSW01_17370 are separated by 39 nucleotidesCSW01_17370 and CSW01_17375 are separated by 191 nucleotidesCSW01_17375 and CSW01_17380 are separated by 9 nucleotidesCSW01_17380 and CSW01_17385 overlap by 4 nucleotides CSW01_17365: CSW01_17365 - DNA mismatch repair protein MutT, at 567,006 to 567,455 _17365 CSW01_17370: CSW01_17370 - hypothetical protein, at 567,495 to 567,845 _17370 CSW01_17375: CSW01_17375 - SAM-dependent methyltransferase, at 568,037 to 568,762 _17375 CSW01_17380: CSW01_17380 - LysR family transcriptional regulator, at 568,772 to 569,713 _17380 CSW01_17385: CSW01_17385 - antibiotic biosynthesis monooxygenase, at 569,710 to 570,000 _17385 Position (kb) 568 569Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 567.144 kb on - strand, within CSW01_17365at 567.155 kb on + strand, within CSW01_17365at 567.160 kb on - strand, within CSW01_17365at 567.162 kb on - strand, within CSW01_17365at 567.209 kb on + strand, within CSW01_17365at 567.217 kb on - strand, within CSW01_17365at 567.217 kb on - strand, within CSW01_17365at 567.276 kb on + strand, within CSW01_17365at 567.378 kb on - strand, within CSW01_17365at 567.464 kb on + strandat 567.464 kb on + strandat 567.517 kb on - strandat 567.568 kb on + strand, within CSW01_17370at 567.568 kb on + strand, within CSW01_17370at 567.568 kb on + strand, within CSW01_17370at 567.646 kb on + strand, within CSW01_17370at 567.654 kb on - strand, within CSW01_17370at 567.673 kb on - strand, within CSW01_17370at 567.803 kb on - strand, within CSW01_17370at 567.876 kb on - strandat 568.075 kb on + strandat 568.131 kb on + strand, within CSW01_17375at 568.131 kb on + strand, within CSW01_17375at 568.164 kb on - strand, within CSW01_17375at 568.164 kb on - strand, within CSW01_17375at 568.243 kb on + strand, within CSW01_17375at 568.269 kb on + strand, within CSW01_17375at 568.269 kb on + strand, within CSW01_17375at 568.269 kb on + strand, within CSW01_17375at 568.277 kb on - strand, within CSW01_17375at 568.277 kb on - strand, within CSW01_17375at 568.277 kb on - strand, within CSW01_17375at 568.277 kb on - strand, within CSW01_17375at 568.277 kb on - strand, within CSW01_17375at 568.290 kb on - strand, within CSW01_17375at 568.396 kb on - strand, within CSW01_17375at 568.426 kb on + strand, within CSW01_17375at 568.426 kb on + strand, within CSW01_17375at 568.426 kb on + strand, within CSW01_17375at 568.426 kb on + strand, within CSW01_17375at 568.428 kb on + strand, within CSW01_17375at 568.428 kb on + strand, within CSW01_17375at 568.428 kb on + strand, within CSW01_17375at 568.434 kb on - strand, within CSW01_17375at 568.434 kb on - strand, within CSW01_17375at 568.434 kb on - strand, within CSW01_17375at 568.434 kb on - strand, within CSW01_17375at 568.434 kb on - strand, within CSW01_17375at 568.434 kb on - strand, within CSW01_17375at 568.434 kb on - strand, within CSW01_17375at 568.434 kb on - strand, within CSW01_17375at 568.436 kb on - strand, within CSW01_17375at 568.436 kb on - strand, within CSW01_17375at 568.468 kb on + strand, within CSW01_17375at 568.476 kb on - strand, within CSW01_17375at 568.546 kb on + strand, within CSW01_17375at 568.547 kb on - strand, within CSW01_17375at 568.551 kb on + strand, within CSW01_17375at 568.558 kb on + strand, within CSW01_17375at 568.582 kb on + strand, within CSW01_17375at 568.624 kb on + strand, within CSW01_17375at 568.624 kb on + strand, within CSW01_17375at 568.624 kb on + strand, within CSW01_17375at 568.688 kb on + strand, within CSW01_17375at 568.733 kb on + strandat 568.751 kb on - strandat 568.845 kb on + strandat 568.845 kb on + strandat 568.875 kb on + strand, within CSW01_17380at 569.003 kb on - strand, within CSW01_17380at 569.015 kb on - strand, within CSW01_17380at 569.051 kb on + strand, within CSW01_17380at 569.150 kb on - strand, within CSW01_17380at 569.258 kb on - strand, within CSW01_17380at 569.284 kb on + strand, within CSW01_17380at 569.299 kb on + strand, within CSW01_17380at 569.332 kb on + strand, within CSW01_17380at 569.346 kb on + strand, within CSW01_17380at 569.346 kb on + strand, within CSW01_17380at 569.346 kb on + strand, within CSW01_17380at 569.409 kb on + strand, within CSW01_17380at 569.417 kb on - strand, within CSW01_17380at 569.422 kb on + strand, within CSW01_17380at 569.426 kb on + strand, within CSW01_17380at 569.458 kb on - strand, within CSW01_17380at 569.515 kb on + strand, within CSW01_17380at 569.526 kb on - strand, within CSW01_17380at 569.667 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1
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567,144 - CSW01_17365 0.31 -0.1
567,155 + CSW01_17365 0.33 -1.0
567,160 - CSW01_17365 0.34 -2.2
567,162 - CSW01_17365 0.35 -0.5
567,209 + CSW01_17365 0.45 -1.8
567,217 - CSW01_17365 0.47 -0.6
567,217 - CSW01_17365 0.47 +1.4
567,276 + CSW01_17365 0.60 -2.6
567,378 - CSW01_17365 0.83 -0.3
567,464 + +0.7
567,464 + -2.0
567,517 - -1.9
567,568 + CSW01_17370 0.21 +0.6
567,568 + CSW01_17370 0.21 -1.2
567,568 + CSW01_17370 0.21 +0.8
567,646 + CSW01_17370 0.43 -2.8
567,654 - CSW01_17370 0.45 +0.4
567,673 - CSW01_17370 0.51 -1.6
567,803 - CSW01_17370 0.88 +1.0
567,876 - -1.0
568,075 + -0.1
568,131 + CSW01_17375 0.13 -1.2
568,131 + CSW01_17375 0.13 -1.6
568,164 - CSW01_17375 0.17 +0.2
568,164 - CSW01_17375 0.17 -0.7
568,243 + CSW01_17375 0.28 -0.5
568,269 + CSW01_17375 0.32 +1.1
568,269 + CSW01_17375 0.32 -2.2
568,269 + CSW01_17375 0.32 -0.6
568,277 - CSW01_17375 0.33 -0.3
568,277 - CSW01_17375 0.33 +0.3
568,277 - CSW01_17375 0.33 +0.4
568,277 - CSW01_17375 0.33 +0.1
568,277 - CSW01_17375 0.33 -1.3
568,290 - CSW01_17375 0.35 +0.6
568,396 - CSW01_17375 0.49 -0.1
568,426 + CSW01_17375 0.54 -1.9
568,426 + CSW01_17375 0.54 +1.1
568,426 + CSW01_17375 0.54 +0.2
568,426 + CSW01_17375 0.54 -1.3
568,428 + CSW01_17375 0.54 -1.1
568,428 + CSW01_17375 0.54 -0.0
568,428 + CSW01_17375 0.54 +1.8
568,434 - CSW01_17375 0.55 -1.5
568,434 - CSW01_17375 0.55 -2.3
568,434 - CSW01_17375 0.55 +0.0
568,434 - CSW01_17375 0.55 +2.1
568,434 - CSW01_17375 0.55 -3.6
568,434 - CSW01_17375 0.55 -0.7
568,434 - CSW01_17375 0.55 +0.8
568,434 - CSW01_17375 0.55 +0.7
568,436 - CSW01_17375 0.55 +0.3
568,436 - CSW01_17375 0.55 -1.1
568,468 + CSW01_17375 0.59 -2.2
568,476 - CSW01_17375 0.60 -0.7
568,546 + CSW01_17375 0.70 +0.0
568,547 - CSW01_17375 0.70 -2.0
568,551 + CSW01_17375 0.71 +2.0
568,558 + CSW01_17375 0.72 +0.0
568,582 + CSW01_17375 0.75 +0.5
568,624 + CSW01_17375 0.81 -0.0
568,624 + CSW01_17375 0.81 -0.8
568,624 + CSW01_17375 0.81 -0.3
568,688 + CSW01_17375 0.90 +1.4
568,733 + +1.0
568,751 - -0.2
568,845 + -2.1
568,845 + +0.6
568,875 + CSW01_17380 0.11 -1.0
569,003 - CSW01_17380 0.25 +1.2
569,015 - CSW01_17380 0.26 -2.9
569,051 + CSW01_17380 0.30 +0.9
569,150 - CSW01_17380 0.40 +0.7
569,258 - CSW01_17380 0.52 +0.4
569,284 + CSW01_17380 0.54 +0.6
569,299 + CSW01_17380 0.56 +1.8
569,332 + CSW01_17380 0.59 -1.7
569,346 + CSW01_17380 0.61 +0.3
569,346 + CSW01_17380 0.61 -1.8
569,346 + CSW01_17380 0.61 -0.7
569,409 + CSW01_17380 0.68 -1.3
569,417 - CSW01_17380 0.68 -1.6
569,422 + CSW01_17380 0.69 -2.7
569,426 + CSW01_17380 0.69 -1.6
569,458 - CSW01_17380 0.73 +1.3
569,515 + CSW01_17380 0.79 -2.6
569,526 - CSW01_17380 0.80 +0.3
569,667 + +0.3

Or see this region's nucleotide sequence