Experiment: ICP3_phage_411_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17150 and CSW01_17155 are separated by 11 nucleotides CSW01_17155 and CSW01_17160 are separated by 101 nucleotides CSW01_17160 and CSW01_17165 overlap by 4 nucleotides CSW01_17165 and CSW01_17170 are separated by 83 nucleotides
CSW01_17150: CSW01_17150 - thiol:disulfide oxidoreductase, at 520,549 to 521,217
_17150
CSW01_17155: CSW01_17155 - glutathione S-transferase, at 521,229 to 521,840
_17155
CSW01_17160: CSW01_17160 - TetR/AcrR family transcriptional regulator, at 521,942 to 522,538
_17160
CSW01_17165: CSW01_17165 - DUF296 domain-containing protein, at 522,535 to 522,927
_17165
CSW01_17170: CSW01_17170 - ABC transporter ATP-binding protein, at 523,011 to 524,603
_17170
Position (kb) 521
522
523 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 520.989 kb on + strand, within CSW01_17150 at 521.024 kb on - strand, within CSW01_17150 at 521.121 kb on + strand, within CSW01_17150 at 521.150 kb on - strand, within CSW01_17150 at 521.157 kb on + strand at 521.402 kb on + strand, within CSW01_17155 at 521.434 kb on + strand, within CSW01_17155 at 521.442 kb on + strand, within CSW01_17155 at 521.644 kb on + strand, within CSW01_17155 at 521.654 kb on + strand, within CSW01_17155 at 521.654 kb on + strand, within CSW01_17155 at 521.654 kb on + strand, within CSW01_17155 at 521.654 kb on + strand, within CSW01_17155 at 521.654 kb on + strand, within CSW01_17155 at 521.654 kb on + strand, within CSW01_17155 at 521.654 kb on + strand, within CSW01_17155 at 521.654 kb on + strand, within CSW01_17155 at 521.656 kb on + strand, within CSW01_17155 at 521.656 kb on + strand, within CSW01_17155 at 521.656 kb on + strand, within CSW01_17155 at 521.662 kb on - strand, within CSW01_17155 at 521.662 kb on - strand, within CSW01_17155 at 521.662 kb on - strand, within CSW01_17155 at 521.664 kb on - strand, within CSW01_17155 at 521.664 kb on - strand, within CSW01_17155 at 521.664 kb on - strand, within CSW01_17155 at 521.670 kb on - strand, within CSW01_17155 at 521.702 kb on - strand, within CSW01_17155 at 521.702 kb on - strand, within CSW01_17155 at 521.808 kb on + strand at 522.071 kb on - strand, within CSW01_17160 at 522.221 kb on + strand, within CSW01_17160 at 522.229 kb on - strand, within CSW01_17160 at 522.400 kb on + strand, within CSW01_17160 at 522.410 kb on - strand, within CSW01_17160 at 522.427 kb on + strand, within CSW01_17160 at 522.435 kb on - strand, within CSW01_17160 at 522.455 kb on + strand, within CSW01_17160 at 522.455 kb on + strand, within CSW01_17160 at 522.509 kb on - strand at 522.534 kb on - strand at 522.558 kb on - strand at 522.610 kb on + strand, within CSW01_17165 at 522.610 kb on + strand, within CSW01_17165 at 522.618 kb on - strand, within CSW01_17165 at 522.637 kb on - strand, within CSW01_17165 at 522.800 kb on - strand, within CSW01_17165 at 522.858 kb on - strand, within CSW01_17165 at 522.913 kb on + strand at 523.042 kb on + strand at 523.048 kb on - strand at 523.071 kb on + strand at 523.071 kb on + strand at 523.079 kb on - strand at 523.113 kb on - strand at 523.135 kb on + strand at 523.236 kb on + strand, within CSW01_17170 at 523.247 kb on + strand, within CSW01_17170 at 523.284 kb on - strand, within CSW01_17170 at 523.422 kb on - strand, within CSW01_17170 at 523.449 kb on - strand, within CSW01_17170 at 523.449 kb on - strand, within CSW01_17170 at 523.494 kb on - strand, within CSW01_17170
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1 remove 520,989 + CSW01_17150 0.66 +1.3 521,024 - CSW01_17150 0.71 +0.1 521,121 + CSW01_17150 0.86 +0.6 521,150 - CSW01_17150 0.90 +0.3 521,157 + +1.1 521,402 + CSW01_17155 0.28 -1.9 521,434 + CSW01_17155 0.33 +1.0 521,442 + CSW01_17155 0.35 +0.1 521,644 + CSW01_17155 0.68 -4.2 521,654 + CSW01_17155 0.69 -0.4 521,654 + CSW01_17155 0.69 +0.7 521,654 + CSW01_17155 0.69 -0.1 521,654 + CSW01_17155 0.69 +1.3 521,654 + CSW01_17155 0.69 +0.5 521,654 + CSW01_17155 0.69 +0.6 521,654 + CSW01_17155 0.69 +0.6 521,654 + CSW01_17155 0.69 -0.6 521,656 + CSW01_17155 0.70 -0.6 521,656 + CSW01_17155 0.70 +0.6 521,656 + CSW01_17155 0.70 +1.3 521,662 - CSW01_17155 0.71 -2.7 521,662 - CSW01_17155 0.71 +0.1 521,662 - CSW01_17155 0.71 -1.9 521,664 - CSW01_17155 0.71 -0.2 521,664 - CSW01_17155 0.71 +0.7 521,664 - CSW01_17155 0.71 +0.0 521,670 - CSW01_17155 0.72 -0.4 521,702 - CSW01_17155 0.77 +0.2 521,702 - CSW01_17155 0.77 +2.0 521,808 + +0.3 522,071 - CSW01_17160 0.22 -1.5 522,221 + CSW01_17160 0.47 -0.3 522,229 - CSW01_17160 0.48 -1.2 522,400 + CSW01_17160 0.77 -3.1 522,410 - CSW01_17160 0.78 +0.4 522,427 + CSW01_17160 0.81 -2.3 522,435 - CSW01_17160 0.83 +0.5 522,455 + CSW01_17160 0.86 -1.9 522,455 + CSW01_17160 0.86 -1.0 522,509 - -0.8 522,534 - -0.3 522,558 - +0.4 522,610 + CSW01_17165 0.19 -1.4 522,610 + CSW01_17165 0.19 -0.4 522,618 - CSW01_17165 0.21 +0.5 522,637 - CSW01_17165 0.26 -0.2 522,800 - CSW01_17165 0.67 +0.1 522,858 - CSW01_17165 0.82 +0.6 522,913 + +0.3 523,042 + +0.3 523,048 - +0.4 523,071 + +1.0 523,071 + -0.8 523,079 - -0.7 523,113 - +1.7 523,135 + -0.7 523,236 + CSW01_17170 0.14 -2.0 523,247 + CSW01_17170 0.15 +0.9 523,284 - CSW01_17170 0.17 -1.8 523,422 - CSW01_17170 0.26 -0.1 523,449 - CSW01_17170 0.27 +1.2 523,449 - CSW01_17170 0.27 +0.3 523,494 - CSW01_17170 0.30 +1.7
Or see this region's nucleotide sequence