Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17095

Experiment: ICP3_phage_411_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17085 and CSW01_17090 are separated by 150 nucleotidesCSW01_17090 and CSW01_17095 are separated by 206 nucleotidesCSW01_17095 and CSW01_17100 are separated by 49 nucleotides CSW01_17085: CSW01_17085 - D-alanine--D-alanine ligase, at 507,340 to 508,344 _17085 CSW01_17090: CSW01_17090 - SPOR domain-containing protein, at 508,495 to 509,082 _17090 CSW01_17095: CSW01_17095 - protein acetyltransferase, at 509,289 to 511,970 _17095 CSW01_17100: CSW01_17100 - LysR family transcriptional regulator, at 512,020 to 512,907 _17100 Position (kb) 509 510 511 512Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 508.539 kb on + strandat 508.809 kb on + strand, within CSW01_17090at 508.826 kb on + strand, within CSW01_17090at 508.826 kb on + strand, within CSW01_17090at 508.834 kb on - strand, within CSW01_17090at 508.834 kb on - strand, within CSW01_17090at 508.908 kb on - strand, within CSW01_17090at 508.920 kb on + strand, within CSW01_17090at 508.993 kb on + strand, within CSW01_17090at 509.008 kb on - strand, within CSW01_17090at 509.016 kb on - strand, within CSW01_17090at 509.097 kb on - strandat 509.163 kb on - strandat 509.163 kb on - strandat 509.223 kb on - strandat 509.223 kb on - strandat 509.285 kb on + strandat 509.294 kb on - strandat 509.317 kb on - strandat 509.429 kb on + strandat 509.437 kb on - strandat 509.599 kb on + strand, within CSW01_17095at 509.599 kb on + strand, within CSW01_17095at 509.605 kb on - strand, within CSW01_17095at 509.612 kb on + strand, within CSW01_17095at 509.633 kb on + strand, within CSW01_17095at 509.633 kb on + strand, within CSW01_17095at 509.641 kb on - strand, within CSW01_17095at 509.653 kb on - strand, within CSW01_17095at 509.676 kb on + strand, within CSW01_17095at 509.688 kb on + strand, within CSW01_17095at 509.791 kb on - strand, within CSW01_17095at 509.791 kb on - strand, within CSW01_17095at 509.896 kb on - strand, within CSW01_17095at 509.896 kb on - strand, within CSW01_17095at 509.896 kb on - strand, within CSW01_17095at 510.044 kb on + strand, within CSW01_17095at 510.105 kb on + strand, within CSW01_17095at 510.105 kb on + strand, within CSW01_17095at 510.105 kb on + strand, within CSW01_17095at 510.105 kb on + strand, within CSW01_17095at 510.106 kb on - strand, within CSW01_17095at 510.113 kb on - strand, within CSW01_17095at 510.113 kb on - strand, within CSW01_17095at 510.127 kb on - strand, within CSW01_17095at 510.127 kb on - strand, within CSW01_17095at 510.135 kb on - strand, within CSW01_17095at 510.161 kb on - strand, within CSW01_17095at 510.174 kb on - strand, within CSW01_17095at 510.238 kb on + strand, within CSW01_17095at 510.259 kb on + strand, within CSW01_17095at 510.267 kb on - strand, within CSW01_17095at 510.324 kb on + strand, within CSW01_17095at 510.326 kb on + strand, within CSW01_17095at 510.334 kb on - strand, within CSW01_17095at 510.334 kb on - strand, within CSW01_17095at 510.435 kb on - strand, within CSW01_17095at 510.476 kb on + strand, within CSW01_17095at 510.476 kb on + strand, within CSW01_17095at 510.476 kb on + strand, within CSW01_17095at 510.484 kb on - strand, within CSW01_17095at 510.484 kb on - strand, within CSW01_17095at 510.578 kb on + strand, within CSW01_17095at 510.586 kb on - strand, within CSW01_17095at 510.624 kb on + strand, within CSW01_17095at 510.682 kb on + strand, within CSW01_17095at 510.722 kb on + strand, within CSW01_17095at 510.730 kb on - strand, within CSW01_17095at 510.730 kb on - strand, within CSW01_17095at 510.799 kb on - strand, within CSW01_17095at 510.823 kb on + strand, within CSW01_17095at 510.839 kb on - strand, within CSW01_17095at 510.841 kb on + strand, within CSW01_17095at 510.849 kb on - strand, within CSW01_17095at 510.869 kb on - strand, within CSW01_17095at 510.899 kb on - strand, within CSW01_17095at 510.901 kb on + strand, within CSW01_17095at 510.909 kb on - strand, within CSW01_17095at 510.910 kb on - strand, within CSW01_17095at 510.942 kb on - strand, within CSW01_17095at 510.958 kb on + strand, within CSW01_17095at 510.968 kb on + strand, within CSW01_17095at 510.971 kb on - strand, within CSW01_17095at 510.987 kb on + strand, within CSW01_17095at 510.997 kb on + strand, within CSW01_17095at 511.000 kb on - strand, within CSW01_17095at 511.015 kb on - strand, within CSW01_17095at 511.041 kb on + strand, within CSW01_17095at 511.138 kb on + strand, within CSW01_17095at 511.215 kb on - strand, within CSW01_17095at 511.332 kb on - strand, within CSW01_17095at 511.384 kb on - strand, within CSW01_17095at 511.475 kb on + strand, within CSW01_17095at 511.531 kb on + strand, within CSW01_17095at 511.539 kb on - strand, within CSW01_17095at 511.613 kb on - strand, within CSW01_17095at 511.863 kb on + strandat 512.055 kb on - strandat 512.063 kb on + strandat 512.103 kb on - strandat 512.121 kb on + strand, within CSW01_17100at 512.159 kb on + strand, within CSW01_17100at 512.165 kb on + strand, within CSW01_17100at 512.167 kb on - strand, within CSW01_17100at 512.173 kb on - strand, within CSW01_17100at 512.189 kb on + strand, within CSW01_17100at 512.333 kb on + strand, within CSW01_17100at 512.363 kb on - strand, within CSW01_17100at 512.388 kb on + strand, within CSW01_17100at 512.396 kb on - strand, within CSW01_17100at 512.412 kb on + strand, within CSW01_17100at 512.557 kb on - strand, within CSW01_17100at 512.597 kb on + strand, within CSW01_17100at 512.605 kb on - strand, within CSW01_17100at 512.654 kb on + strand, within CSW01_17100at 512.687 kb on + strand, within CSW01_17100at 512.695 kb on - strand, within CSW01_17100at 512.695 kb on - strand, within CSW01_17100at 512.765 kb on + strand, within CSW01_17100at 512.816 kb on + strand, within CSW01_17100at 512.819 kb on - strandat 512.824 kb on - strandat 512.856 kb on + strandat 512.891 kb on - strandat 512.891 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1
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508,539 + +0.2
508,809 + CSW01_17090 0.53 -0.2
508,826 + CSW01_17090 0.56 -0.2
508,826 + CSW01_17090 0.56 +0.1
508,834 - CSW01_17090 0.58 -2.1
508,834 - CSW01_17090 0.58 +1.2
508,908 - CSW01_17090 0.70 -1.0
508,920 + CSW01_17090 0.72 +0.3
508,993 + CSW01_17090 0.85 -0.7
509,008 - CSW01_17090 0.87 +2.9
509,016 - CSW01_17090 0.89 +0.7
509,097 - -2.1
509,163 - -0.3
509,163 - +1.4
509,223 - +1.7
509,223 - -2.2
509,285 + +0.9
509,294 - -2.0
509,317 - -2.3
509,429 + -2.1
509,437 - -2.7
509,599 + CSW01_17095 0.12 -0.1
509,599 + CSW01_17095 0.12 -0.8
509,605 - CSW01_17095 0.12 -1.1
509,612 + CSW01_17095 0.12 +0.3
509,633 + CSW01_17095 0.13 -0.8
509,633 + CSW01_17095 0.13 -1.4
509,641 - CSW01_17095 0.13 +0.5
509,653 - CSW01_17095 0.14 +0.1
509,676 + CSW01_17095 0.14 -2.0
509,688 + CSW01_17095 0.15 -1.1
509,791 - CSW01_17095 0.19 +1.0
509,791 - CSW01_17095 0.19 -0.1
509,896 - CSW01_17095 0.23 +0.6
509,896 - CSW01_17095 0.23 -0.9
509,896 - CSW01_17095 0.23 -0.0
510,044 + CSW01_17095 0.28 -0.8
510,105 + CSW01_17095 0.30 -2.6
510,105 + CSW01_17095 0.30 -1.7
510,105 + CSW01_17095 0.30 +0.5
510,105 + CSW01_17095 0.30 +1.2
510,106 - CSW01_17095 0.30 -1.5
510,113 - CSW01_17095 0.31 -0.5
510,113 - CSW01_17095 0.31 -1.1
510,127 - CSW01_17095 0.31 -1.0
510,127 - CSW01_17095 0.31 +0.8
510,135 - CSW01_17095 0.32 +0.3
510,161 - CSW01_17095 0.33 -3.0
510,174 - CSW01_17095 0.33 -2.1
510,238 + CSW01_17095 0.35 -0.1
510,259 + CSW01_17095 0.36 -1.0
510,267 - CSW01_17095 0.36 -2.9
510,324 + CSW01_17095 0.39 +0.2
510,326 + CSW01_17095 0.39 -3.1
510,334 - CSW01_17095 0.39 -0.3
510,334 - CSW01_17095 0.39 -0.1
510,435 - CSW01_17095 0.43 -3.1
510,476 + CSW01_17095 0.44 +0.6
510,476 + CSW01_17095 0.44 -0.4
510,476 + CSW01_17095 0.44 -1.3
510,484 - CSW01_17095 0.45 -3.1
510,484 - CSW01_17095 0.45 -1.6
510,578 + CSW01_17095 0.48 -1.1
510,586 - CSW01_17095 0.48 -2.0
510,624 + CSW01_17095 0.50 -0.5
510,682 + CSW01_17095 0.52 -3.2
510,722 + CSW01_17095 0.53 -0.1
510,730 - CSW01_17095 0.54 -1.4
510,730 - CSW01_17095 0.54 -1.7
510,799 - CSW01_17095 0.56 +0.1
510,823 + CSW01_17095 0.57 -1.5
510,839 - CSW01_17095 0.58 -3.2
510,841 + CSW01_17095 0.58 -1.4
510,849 - CSW01_17095 0.58 -1.7
510,869 - CSW01_17095 0.59 -4.4
510,899 - CSW01_17095 0.60 -0.3
510,901 + CSW01_17095 0.60 -1.9
510,909 - CSW01_17095 0.60 -0.7
510,910 - CSW01_17095 0.60 +0.2
510,942 - CSW01_17095 0.62 -0.6
510,958 + CSW01_17095 0.62 -3.1
510,968 + CSW01_17095 0.63 -0.0
510,971 - CSW01_17095 0.63 -1.1
510,987 + CSW01_17095 0.63 +0.3
510,997 + CSW01_17095 0.64 -0.4
511,000 - CSW01_17095 0.64 -1.3
511,015 - CSW01_17095 0.64 -3.3
511,041 + CSW01_17095 0.65 -2.4
511,138 + CSW01_17095 0.69 +0.3
511,215 - CSW01_17095 0.72 -0.8
511,332 - CSW01_17095 0.76 -1.1
511,384 - CSW01_17095 0.78 -2.3
511,475 + CSW01_17095 0.82 +1.9
511,531 + CSW01_17095 0.84 -3.7
511,539 - CSW01_17095 0.84 -0.3
511,613 - CSW01_17095 0.87 -0.5
511,863 + -1.8
512,055 - +0.2
512,063 + -2.6
512,103 - -2.0
512,121 + CSW01_17100 0.11 -2.5
512,159 + CSW01_17100 0.16 -0.3
512,165 + CSW01_17100 0.16 -0.8
512,167 - CSW01_17100 0.17 -0.4
512,173 - CSW01_17100 0.17 -0.1
512,189 + CSW01_17100 0.19 -0.3
512,333 + CSW01_17100 0.35 +0.6
512,363 - CSW01_17100 0.39 +0.3
512,388 + CSW01_17100 0.41 -0.7
512,396 - CSW01_17100 0.42 -1.5
512,412 + CSW01_17100 0.44 -1.8
512,557 - CSW01_17100 0.60 +0.7
512,597 + CSW01_17100 0.65 +0.3
512,605 - CSW01_17100 0.66 +0.5
512,654 + CSW01_17100 0.71 -2.6
512,687 + CSW01_17100 0.75 -1.5
512,695 - CSW01_17100 0.76 +1.1
512,695 - CSW01_17100 0.76 +0.4
512,765 + CSW01_17100 0.84 -0.8
512,816 + CSW01_17100 0.90 +2.5
512,819 - -0.7
512,824 - -2.6
512,856 + +1.4
512,891 - -2.3
512,891 - +0.4

Or see this region's nucleotide sequence