Experiment: ICP3_phage_411_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17050 and CSW01_17055 overlap by 26 nucleotides CSW01_17055 and CSW01_17060 overlap by 4 nucleotides CSW01_17060 and CSW01_17065 are separated by 60 nucleotides
CSW01_17050: CSW01_17050 - histidine kinase, at 501,435 to 502,934
_17050
CSW01_17055: CSW01_17055 - DNA-binding response regulator, at 502,909 to 503,565
_17055
CSW01_17060: CSW01_17060 - DUF2861 domain-containing protein, at 503,562 to 504,452
_17060
CSW01_17065: CSW01_17065 - conjugal transfer protein TraF, at 504,513 to 505,679
_17065
Position (kb) 503
504
505 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 502.671 kb on + strand, within CSW01_17050 at 502.689 kb on - strand, within CSW01_17050 at 502.737 kb on - strand, within CSW01_17050 at 502.970 kb on + strand at 502.978 kb on - strand, within CSW01_17055 at 502.984 kb on + strand, within CSW01_17055 at 503.029 kb on + strand, within CSW01_17055 at 503.070 kb on + strand, within CSW01_17055 at 503.202 kb on + strand, within CSW01_17055 at 503.202 kb on + strand, within CSW01_17055 at 503.256 kb on - strand, within CSW01_17055 at 503.256 kb on - strand, within CSW01_17055 at 503.341 kb on + strand, within CSW01_17055 at 503.361 kb on - strand, within CSW01_17055 at 503.362 kb on - strand, within CSW01_17055 at 503.482 kb on - strand, within CSW01_17055 at 503.548 kb on - strand at 503.560 kb on - strand at 503.609 kb on + strand at 503.609 kb on + strand at 503.766 kb on + strand, within CSW01_17060 at 503.802 kb on + strand, within CSW01_17060 at 504.023 kb on + strand, within CSW01_17060 at 504.094 kb on - strand, within CSW01_17060 at 504.110 kb on - strand, within CSW01_17060 at 504.140 kb on + strand, within CSW01_17060 at 504.442 kb on - strand at 504.549 kb on + strand at 504.622 kb on + strand at 504.749 kb on + strand, within CSW01_17065 at 504.858 kb on + strand, within CSW01_17065 at 504.880 kb on + strand, within CSW01_17065 at 504.888 kb on - strand, within CSW01_17065 at 504.935 kb on + strand, within CSW01_17065 at 504.935 kb on + strand, within CSW01_17065 at 504.943 kb on - strand, within CSW01_17065 at 504.943 kb on - strand, within CSW01_17065 at 505.065 kb on + strand, within CSW01_17065 at 505.134 kb on + strand, within CSW01_17065 at 505.142 kb on - strand, within CSW01_17065 at 505.413 kb on - strand, within CSW01_17065
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1 remove 502,671 + CSW01_17050 0.82 +1.2 502,689 - CSW01_17050 0.84 +0.3 502,737 - CSW01_17050 0.87 +0.3 502,970 + -2.8 502,978 - CSW01_17055 0.11 -0.4 502,984 + CSW01_17055 0.11 -0.1 503,029 + CSW01_17055 0.18 +2.8 503,070 + CSW01_17055 0.25 +1.9 503,202 + CSW01_17055 0.45 +1.6 503,202 + CSW01_17055 0.45 +0.9 503,256 - CSW01_17055 0.53 -0.4 503,256 - CSW01_17055 0.53 +0.5 503,341 + CSW01_17055 0.66 +0.3 503,361 - CSW01_17055 0.69 -0.7 503,362 - CSW01_17055 0.69 -1.0 503,482 - CSW01_17055 0.87 +0.1 503,548 - +1.1 503,560 - -0.4 503,609 + -3.0 503,609 + -2.3 503,766 + CSW01_17060 0.23 -0.6 503,802 + CSW01_17060 0.27 -0.5 504,023 + CSW01_17060 0.52 -1.2 504,094 - CSW01_17060 0.60 +1.8 504,110 - CSW01_17060 0.62 -0.5 504,140 + CSW01_17060 0.65 -1.6 504,442 - -0.1 504,549 + +0.5 504,622 + -0.5 504,749 + CSW01_17065 0.20 +2.2 504,858 + CSW01_17065 0.30 -2.2 504,880 + CSW01_17065 0.31 +0.8 504,888 - CSW01_17065 0.32 -0.2 504,935 + CSW01_17065 0.36 +1.5 504,935 + CSW01_17065 0.36 +0.2 504,943 - CSW01_17065 0.37 +0.4 504,943 - CSW01_17065 0.37 +1.2 505,065 + CSW01_17065 0.47 -0.8 505,134 + CSW01_17065 0.53 -0.1 505,142 - CSW01_17065 0.54 +0.5 505,413 - CSW01_17065 0.77 +0.7
Or see this region's nucleotide sequence