Experiment: ICP3_phage_411_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16075 and CSW01_16080 overlap by 5 nucleotides CSW01_16080 and CSW01_16085 overlap by 23 nucleotides CSW01_16085 and CSW01_16090 are separated by 169 nucleotides CSW01_16090 and CSW01_16095 are separated by 115 nucleotides CSW01_16095 and CSW01_16100 are separated by 129 nucleotides CSW01_16100 and CSW01_16105 overlap by 53 nucleotides CSW01_16105 and CSW01_16110 are separated by 14 nucleotides
CSW01_16075: CSW01_16075 - hypothetical protein, at 369,854 to 370,684
_16075
CSW01_16080: CSW01_16080 - hypothetical protein, at 370,680 to 370,763
_16080
CSW01_16085: CSW01_16085 - hypothetical protein, at 370,741 to 371,223
_16085
CSW01_16090: CSW01_16090 - hypothetical protein, at 371,393 to 371,554
_16090
CSW01_16095: CSW01_16095 - hypothetical protein, at 371,670 to 372,545
_16095
CSW01_16100: CSW01_16100 - N-acetyltransferase, at 372,675 to 373,130
_16100
CSW01_16105: CSW01_16105 - hypothetical protein, at 373,078 to 373,299
_16105
CSW01_16110: CSW01_16110 - VOC family protein, at 373,314 to 373,727
_16110
Position (kb) 371
372
373 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 370.670 kb on + strand at 370.670 kb on + strand at 370.678 kb on - strand at 370.678 kb on - strand at 370.818 kb on - strand, within CSW01_16085 at 370.820 kb on - strand, within CSW01_16085 at 371.135 kb on + strand, within CSW01_16085 at 371.140 kb on + strand, within CSW01_16085 at 371.145 kb on + strand, within CSW01_16085 at 371.172 kb on + strand, within CSW01_16085 at 371.557 kb on - strand at 371.733 kb on + strand at 371.853 kb on + strand, within CSW01_16095 at 371.876 kb on - strand, within CSW01_16095 at 371.950 kb on + strand, within CSW01_16095 at 371.975 kb on + strand, within CSW01_16095 at 371.983 kb on - strand, within CSW01_16095 at 372.069 kb on + strand, within CSW01_16095 at 372.069 kb on + strand, within CSW01_16095 at 372.076 kb on + strand, within CSW01_16095 at 372.076 kb on + strand, within CSW01_16095 at 372.076 kb on + strand, within CSW01_16095 at 372.076 kb on + strand, within CSW01_16095 at 372.076 kb on + strand, within CSW01_16095 at 372.084 kb on - strand, within CSW01_16095 at 372.084 kb on - strand, within CSW01_16095 at 372.084 kb on - strand, within CSW01_16095 at 372.084 kb on - strand, within CSW01_16095 at 372.084 kb on - strand, within CSW01_16095 at 372.084 kb on - strand, within CSW01_16095 at 372.084 kb on - strand, within CSW01_16095 at 372.084 kb on - strand, within CSW01_16095 at 372.258 kb on + strand, within CSW01_16095 at 372.380 kb on - strand, within CSW01_16095 at 372.385 kb on - strand, within CSW01_16095 at 372.385 kb on - strand, within CSW01_16095 at 372.405 kb on - strand, within CSW01_16095
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1 remove 370,670 + +0.1 370,670 + -0.3 370,678 - -0.8 370,678 - -0.8 370,818 - CSW01_16085 0.16 -0.0 370,820 - CSW01_16085 0.16 -3.1 371,135 + CSW01_16085 0.82 -0.3 371,140 + CSW01_16085 0.83 +0.6 371,145 + CSW01_16085 0.84 +1.0 371,172 + CSW01_16085 0.89 -0.0 371,557 - +1.2 371,733 + +0.0 371,853 + CSW01_16095 0.21 -3.1 371,876 - CSW01_16095 0.24 -0.6 371,950 + CSW01_16095 0.32 -0.5 371,975 + CSW01_16095 0.35 -2.0 371,983 - CSW01_16095 0.36 -0.6 372,069 + CSW01_16095 0.46 +0.7 372,069 + CSW01_16095 0.46 +0.3 372,076 + CSW01_16095 0.46 -0.5 372,076 + CSW01_16095 0.46 +0.7 372,076 + CSW01_16095 0.46 +1.5 372,076 + CSW01_16095 0.46 +1.3 372,076 + CSW01_16095 0.46 -0.2 372,084 - CSW01_16095 0.47 -0.9 372,084 - CSW01_16095 0.47 -0.8 372,084 - CSW01_16095 0.47 -2.5 372,084 - CSW01_16095 0.47 -3.1 372,084 - CSW01_16095 0.47 -0.5 372,084 - CSW01_16095 0.47 +0.2 372,084 - CSW01_16095 0.47 -2.8 372,084 - CSW01_16095 0.47 +1.1 372,258 + CSW01_16095 0.67 -1.1 372,380 - CSW01_16095 0.81 -0.3 372,385 - CSW01_16095 0.82 -1.1 372,385 - CSW01_16095 0.82 -0.3 372,405 - CSW01_16095 0.84 -0.1
Or see this region's nucleotide sequence