Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15910

Experiment: ICP3_phage_411_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15895 and CSW01_15900 are separated by 213 nucleotidesCSW01_15900 and CSW01_15905 are separated by 2 nucleotidesCSW01_15905 and CSW01_15910 are separated by 56 nucleotidesCSW01_15910 and CSW01_15915 are separated by 280 nucleotides CSW01_15895: CSW01_15895 - hypothetical protein, at 349,692 to 350,375 _15895 CSW01_15900: CSW01_15900 - hypothetical protein, at 350,589 to 350,855 _15900 CSW01_15905: CSW01_15905 - hypothetical protein, at 350,858 to 350,953 _15905 CSW01_15910: CSW01_15910 - hypothetical protein, at 351,010 to 351,609 _15910 CSW01_15915: CSW01_15915 - restriction endonuclease, at 351,890 to 352,825 _15915 Position (kb) 351 352Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 350.053 kb on + strand, within CSW01_15895at 350.053 kb on + strand, within CSW01_15895at 350.068 kb on - strand, within CSW01_15895at 350.073 kb on + strand, within CSW01_15895at 350.198 kb on - strand, within CSW01_15895at 350.220 kb on + strand, within CSW01_15895at 350.302 kb on + strand, within CSW01_15895at 350.312 kb on + strandat 350.382 kb on + strandat 350.382 kb on + strandat 350.390 kb on - strandat 350.404 kb on - strandat 350.434 kb on + strandat 350.442 kb on - strandat 350.473 kb on + strandat 350.512 kb on + strandat 350.652 kb on + strand, within CSW01_15900at 350.732 kb on - strand, within CSW01_15900at 350.737 kb on + strand, within CSW01_15900at 350.737 kb on + strand, within CSW01_15900at 350.737 kb on + strand, within CSW01_15900at 350.745 kb on + strand, within CSW01_15900at 350.812 kb on - strand, within CSW01_15900at 350.814 kb on + strand, within CSW01_15900at 350.814 kb on + strand, within CSW01_15900at 350.822 kb on - strand, within CSW01_15900at 350.831 kb on + strandat 350.844 kb on - strandat 350.889 kb on - strand, within CSW01_15905at 351.089 kb on - strand, within CSW01_15910at 351.123 kb on - strand, within CSW01_15910at 351.133 kb on - strand, within CSW01_15910at 351.135 kb on - strand, within CSW01_15910at 351.273 kb on + strand, within CSW01_15910at 351.278 kb on + strand, within CSW01_15910at 351.333 kb on + strand, within CSW01_15910at 351.333 kb on - strand, within CSW01_15910at 351.439 kb on - strand, within CSW01_15910at 351.496 kb on - strand, within CSW01_15910at 351.675 kb on + strandat 351.703 kb on - strandat 351.703 kb on - strandat 351.703 kb on - strandat 351.730 kb on - strandat 351.840 kb on - strandat 351.849 kb on + strandat 351.849 kb on + strandat 351.854 kb on + strandat 351.856 kb on + strandat 351.857 kb on - strandat 351.857 kb on - strandat 351.857 kb on - strandat 351.857 kb on - strandat 351.864 kb on - strandat 351.864 kb on - strandat 351.866 kb on + strandat 351.874 kb on - strandat 352.044 kb on - strand, within CSW01_15915at 352.050 kb on + strand, within CSW01_15915at 352.077 kb on + strand, within CSW01_15915at 352.077 kb on + strand, within CSW01_15915at 352.091 kb on - strand, within CSW01_15915at 352.177 kb on + strand, within CSW01_15915at 352.185 kb on - strand, within CSW01_15915at 352.308 kb on + strand, within CSW01_15915at 352.318 kb on + strand, within CSW01_15915at 352.321 kb on - strand, within CSW01_15915at 352.361 kb on - strand, within CSW01_15915at 352.487 kb on + strand, within CSW01_15915at 352.487 kb on + strand, within CSW01_15915at 352.496 kb on + strand, within CSW01_15915at 352.506 kb on - strand, within CSW01_15915at 352.589 kb on - strand, within CSW01_15915

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1
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350,053 + CSW01_15895 0.53 -1.0
350,053 + CSW01_15895 0.53 -0.9
350,068 - CSW01_15895 0.55 +0.0
350,073 + CSW01_15895 0.56 -0.2
350,198 - CSW01_15895 0.74 -1.6
350,220 + CSW01_15895 0.77 +0.3
350,302 + CSW01_15895 0.89 -0.1
350,312 + +0.3
350,382 + +1.6
350,382 + +0.5
350,390 - +0.3
350,404 - -0.3
350,434 + -2.4
350,442 - -1.4
350,473 + -0.1
350,512 + +0.8
350,652 + CSW01_15900 0.24 +1.9
350,732 - CSW01_15900 0.54 -0.8
350,737 + CSW01_15900 0.55 +0.1
350,737 + CSW01_15900 0.55 -0.7
350,737 + CSW01_15900 0.55 -2.8
350,745 + CSW01_15900 0.58 -0.1
350,812 - CSW01_15900 0.84 +0.7
350,814 + CSW01_15900 0.84 +0.7
350,814 + CSW01_15900 0.84 +0.3
350,822 - CSW01_15900 0.87 +2.2
350,831 + +0.5
350,844 - +0.3
350,889 - CSW01_15905 0.32 +2.5
351,089 - CSW01_15910 0.13 +0.3
351,123 - CSW01_15910 0.19 +0.4
351,133 - CSW01_15910 0.20 +1.2
351,135 - CSW01_15910 0.21 -0.8
351,273 + CSW01_15910 0.44 +1.0
351,278 + CSW01_15910 0.45 +0.9
351,333 + CSW01_15910 0.54 +0.8
351,333 - CSW01_15910 0.54 -0.8
351,439 - CSW01_15910 0.71 +1.0
351,496 - CSW01_15910 0.81 -1.3
351,675 + -0.6
351,703 - +1.6
351,703 - +1.2
351,703 - +1.9
351,730 - -0.0
351,840 - -2.3
351,849 + -0.6
351,849 + +0.2
351,854 + -0.5
351,856 + -0.8
351,857 - +0.5
351,857 - +0.8
351,857 - +0.5
351,857 - +1.0
351,864 - -0.3
351,864 - -1.8
351,866 + +0.0
351,874 - +0.3
352,044 - CSW01_15915 0.16 -3.6
352,050 + CSW01_15915 0.17 +2.3
352,077 + CSW01_15915 0.20 +0.5
352,077 + CSW01_15915 0.20 +0.9
352,091 - CSW01_15915 0.21 -1.3
352,177 + CSW01_15915 0.31 -1.6
352,185 - CSW01_15915 0.32 +0.7
352,308 + CSW01_15915 0.45 +0.1
352,318 + CSW01_15915 0.46 +0.8
352,321 - CSW01_15915 0.46 -0.4
352,361 - CSW01_15915 0.50 +0.7
352,487 + CSW01_15915 0.64 +1.8
352,487 + CSW01_15915 0.64 -2.5
352,496 + CSW01_15915 0.65 +0.5
352,506 - CSW01_15915 0.66 -1.8
352,589 - CSW01_15915 0.75 +1.1

Or see this region's nucleotide sequence