Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15825

Experiment: ICP3_phage_411_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15810 and CSW01_15815 are separated by 192 nucleotidesCSW01_15815 and CSW01_15820 are separated by 93 nucleotidesCSW01_15820 and CSW01_15825 are separated by 199 nucleotidesCSW01_15825 and CSW01_15830 overlap by 4 nucleotidesCSW01_15830 and CSW01_15835 are separated by 41 nucleotidesCSW01_15835 and CSW01_15840 are separated by 113 nucleotides CSW01_15810: CSW01_15810 - hypothetical protein, at 342,757 to 343,353 _15810 CSW01_15815: CSW01_15815 - general secretion pathway protein GspI, at 343,546 to 343,650 _15815 CSW01_15820: CSW01_15820 - DUF645 domain-containing protein, at 343,744 to 343,926 _15820 CSW01_15825: CSW01_15825 - hypothetical protein, at 344,126 to 344,599 _15825 CSW01_15830: CSW01_15830 - DUF3265 domain-containing protein, at 344,596 to 344,706 _15830 CSW01_15835: CSW01_15835 - LysE family translocator, at 344,748 to 345,374 _15835 CSW01_15840: CSW01_15840 - hypothetical protein, at 345,488 to 346,195 _15840 Position (kb) 344 345Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 343.242 kb on + strand, within CSW01_15810at 343.275 kb on + strand, within CSW01_15810at 343.275 kb on + strand, within CSW01_15810at 343.301 kb on - strandat 343.406 kb on + strandat 344.149 kb on + strandat 344.152 kb on - strandat 344.260 kb on + strand, within CSW01_15825at 344.260 kb on + strand, within CSW01_15825at 344.268 kb on - strand, within CSW01_15825at 344.268 kb on - strand, within CSW01_15825at 344.268 kb on - strand, within CSW01_15825at 344.268 kb on - strand, within CSW01_15825at 344.268 kb on - strand, within CSW01_15825at 344.370 kb on - strand, within CSW01_15825at 344.402 kb on + strand, within CSW01_15825at 344.612 kb on - strand, within CSW01_15830at 344.614 kb on - strand, within CSW01_15830at 344.614 kb on - strand, within CSW01_15830at 344.614 kb on - strand, within CSW01_15830at 344.684 kb on + strand, within CSW01_15830at 344.694 kb on + strand, within CSW01_15830at 344.694 kb on + strand, within CSW01_15830at 344.694 kb on + strand, within CSW01_15830at 344.697 kb on - strandat 344.699 kb on + strandat 344.701 kb on + strandat 344.701 kb on + strandat 344.701 kb on + strandat 344.701 kb on + strandat 344.702 kb on - strandat 344.707 kb on - strandat 344.709 kb on - strandat 344.709 kb on - strandat 344.709 kb on - strandat 344.709 kb on - strandat 344.709 kb on - strandat 344.771 kb on + strandat 344.771 kb on + strandat 344.837 kb on - strand, within CSW01_15835at 344.852 kb on + strand, within CSW01_15835at 344.872 kb on - strand, within CSW01_15835at 344.995 kb on - strand, within CSW01_15835at 345.038 kb on + strand, within CSW01_15835at 345.046 kb on - strand, within CSW01_15835at 345.064 kb on + strand, within CSW01_15835at 345.090 kb on + strand, within CSW01_15835at 345.134 kb on + strand, within CSW01_15835at 345.141 kb on - strand, within CSW01_15835at 345.236 kb on + strand, within CSW01_15835at 345.236 kb on + strand, within CSW01_15835at 345.236 kb on + strand, within CSW01_15835at 345.236 kb on - strand, within CSW01_15835at 345.238 kb on + strand, within CSW01_15835at 345.238 kb on + strand, within CSW01_15835at 345.244 kb on - strand, within CSW01_15835at 345.244 kb on - strand, within CSW01_15835at 345.244 kb on - strand, within CSW01_15835at 345.244 kb on - strand, within CSW01_15835at 345.244 kb on - strand, within CSW01_15835at 345.244 kb on - strand, within CSW01_15835at 345.246 kb on + strand, within CSW01_15835at 345.306 kb on + strand, within CSW01_15835at 345.314 kb on - strandat 345.327 kb on - strandat 345.364 kb on + strandat 345.369 kb on + strandat 345.372 kb on - strandat 345.401 kb on + strandat 345.482 kb on + strandat 345.490 kb on - strandat 345.544 kb on + strandat 345.549 kb on + strandat 345.549 kb on + strandat 345.597 kb on - strand, within CSW01_15840

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1
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343,242 + CSW01_15810 0.81 -1.6
343,275 + CSW01_15810 0.87 -0.6
343,275 + CSW01_15810 0.87 +0.1
343,301 - +0.6
343,406 + -1.7
344,149 + +1.1
344,152 - +1.3
344,260 + CSW01_15825 0.28 +0.2
344,260 + CSW01_15825 0.28 +0.6
344,268 - CSW01_15825 0.30 -3.5
344,268 - CSW01_15825 0.30 +1.4
344,268 - CSW01_15825 0.30 -0.7
344,268 - CSW01_15825 0.30 -0.5
344,268 - CSW01_15825 0.30 -0.4
344,370 - CSW01_15825 0.51 +0.5
344,402 + CSW01_15825 0.58 -0.5
344,612 - CSW01_15830 0.14 -0.8
344,614 - CSW01_15830 0.16 +0.9
344,614 - CSW01_15830 0.16 +1.0
344,614 - CSW01_15830 0.16 +0.5
344,684 + CSW01_15830 0.79 +0.0
344,694 + CSW01_15830 0.88 +1.8
344,694 + CSW01_15830 0.88 -1.4
344,694 + CSW01_15830 0.88 -0.2
344,697 - -0.7
344,699 + -0.4
344,701 + +0.2
344,701 + -2.7
344,701 + -0.2
344,701 + +1.6
344,702 - +1.1
344,707 - -1.1
344,709 - +0.4
344,709 - +0.4
344,709 - -1.5
344,709 - -0.9
344,709 - +0.3
344,771 + -2.0
344,771 + -0.7
344,837 - CSW01_15835 0.14 +0.8
344,852 + CSW01_15835 0.17 -0.4
344,872 - CSW01_15835 0.20 -1.0
344,995 - CSW01_15835 0.39 -0.8
345,038 + CSW01_15835 0.46 +0.6
345,046 - CSW01_15835 0.48 -0.4
345,064 + CSW01_15835 0.50 -1.0
345,090 + CSW01_15835 0.55 -0.1
345,134 + CSW01_15835 0.62 +0.9
345,141 - CSW01_15835 0.63 -0.4
345,236 + CSW01_15835 0.78 +0.2
345,236 + CSW01_15835 0.78 +1.1
345,236 + CSW01_15835 0.78 -0.1
345,236 - CSW01_15835 0.78 +0.6
345,238 + CSW01_15835 0.78 -0.1
345,238 + CSW01_15835 0.78 -2.0
345,244 - CSW01_15835 0.79 +0.7
345,244 - CSW01_15835 0.79 -2.5
345,244 - CSW01_15835 0.79 +0.5
345,244 - CSW01_15835 0.79 -1.8
345,244 - CSW01_15835 0.79 -1.0
345,244 - CSW01_15835 0.79 +1.8
345,246 + CSW01_15835 0.79 -2.4
345,306 + CSW01_15835 0.89 +0.1
345,314 - -2.2
345,327 - -1.4
345,364 + +1.0
345,369 + +0.6
345,372 - -2.5
345,401 + -0.6
345,482 + -0.6
345,490 - -0.7
345,544 + +0.4
345,549 + -1.2
345,549 + +0.2
345,597 - CSW01_15840 0.15 -0.4

Or see this region's nucleotide sequence