Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15225

Experiment: ICP3_phage_411_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15220 and CSW01_15225 are separated by 332 nucleotidesCSW01_15225 and CSW01_15230 are separated by 183 nucleotides CSW01_15220: CSW01_15220 - alpha-amylase, at 270,196 to 271,596 _15220 CSW01_15225: CSW01_15225 - antibiotic acetyltransferase, at 271,929 to 272,627 _15225 CSW01_15230: CSW01_15230 - glycosyl hydrolase, at 272,811 to 274,977 _15230 Position (kb) 271 272 273Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 270.930 kb on - strand, within CSW01_15220at 270.930 kb on - strand, within CSW01_15220at 270.942 kb on - strand, within CSW01_15220at 270.992 kb on - strand, within CSW01_15220at 271.041 kb on - strand, within CSW01_15220at 271.041 kb on - strand, within CSW01_15220at 271.080 kb on + strand, within CSW01_15220at 271.085 kb on + strand, within CSW01_15220at 271.091 kb on + strand, within CSW01_15220at 271.104 kb on - strand, within CSW01_15220at 271.210 kb on + strand, within CSW01_15220at 271.210 kb on - strand, within CSW01_15220at 271.218 kb on - strand, within CSW01_15220at 271.223 kb on - strand, within CSW01_15220at 271.239 kb on + strand, within CSW01_15220at 271.359 kb on - strand, within CSW01_15220at 271.386 kb on - strand, within CSW01_15220at 271.473 kb on - strandat 271.488 kb on + strandat 271.606 kb on + strandat 271.684 kb on + strandat 271.692 kb on - strandat 271.692 kb on - strandat 271.692 kb on - strandat 271.694 kb on + strandat 271.694 kb on + strandat 271.694 kb on + strandat 271.702 kb on - strandat 271.702 kb on - strandat 271.797 kb on - strandat 271.801 kb on + strandat 271.820 kb on - strandat 271.955 kb on - strandat 272.049 kb on + strand, within CSW01_15225at 272.281 kb on - strand, within CSW01_15225at 272.334 kb on - strand, within CSW01_15225at 272.334 kb on - strand, within CSW01_15225at 272.418 kb on + strand, within CSW01_15225at 272.505 kb on + strand, within CSW01_15225at 272.505 kb on - strand, within CSW01_15225at 272.646 kb on - strandat 272.649 kb on + strandat 272.651 kb on - strandat 272.658 kb on - strandat 272.658 kb on - strandat 272.666 kb on - strandat 272.684 kb on - strandat 272.788 kb on + strandat 272.947 kb on - strandat 272.957 kb on - strandat 272.989 kb on - strandat 272.989 kb on - strandat 272.989 kb on - strandat 273.050 kb on + strand, within CSW01_15230at 273.050 kb on + strand, within CSW01_15230at 273.050 kb on + strand, within CSW01_15230at 273.050 kb on + strand, within CSW01_15230at 273.058 kb on - strand, within CSW01_15230at 273.058 kb on - strand, within CSW01_15230at 273.058 kb on - strand, within CSW01_15230at 273.058 kb on - strand, within CSW01_15230at 273.083 kb on + strand, within CSW01_15230at 273.115 kb on + strand, within CSW01_15230at 273.136 kb on - strand, within CSW01_15230at 273.153 kb on + strand, within CSW01_15230at 273.262 kb on - strand, within CSW01_15230at 273.315 kb on + strand, within CSW01_15230at 273.357 kb on - strand, within CSW01_15230at 273.362 kb on - strand, within CSW01_15230at 273.372 kb on - strand, within CSW01_15230at 273.372 kb on - strand, within CSW01_15230at 273.372 kb on - strand, within CSW01_15230at 273.372 kb on - strand, within CSW01_15230at 273.377 kb on - strand, within CSW01_15230at 273.519 kb on + strand, within CSW01_15230at 273.569 kb on - strand, within CSW01_15230

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1
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270,930 - CSW01_15220 0.52 -2.9
270,930 - CSW01_15220 0.52 -2.2
270,942 - CSW01_15220 0.53 -1.3
270,992 - CSW01_15220 0.57 +0.1
271,041 - CSW01_15220 0.60 -2.6
271,041 - CSW01_15220 0.60 -1.1
271,080 + CSW01_15220 0.63 +0.7
271,085 + CSW01_15220 0.63 +1.5
271,091 + CSW01_15220 0.64 -0.1
271,104 - CSW01_15220 0.65 +2.4
271,210 + CSW01_15220 0.72 +0.5
271,210 - CSW01_15220 0.72 +0.4
271,218 - CSW01_15220 0.73 +0.9
271,223 - CSW01_15220 0.73 -0.1
271,239 + CSW01_15220 0.74 -0.8
271,359 - CSW01_15220 0.83 +2.7
271,386 - CSW01_15220 0.85 -1.2
271,473 - +0.6
271,488 + +1.7
271,606 + -0.2
271,684 + -1.6
271,692 - +0.7
271,692 - -1.2
271,692 - -2.9
271,694 + -1.0
271,694 + -1.0
271,694 + -0.4
271,702 - +0.5
271,702 - -1.2
271,797 - +1.7
271,801 + +0.1
271,820 - -1.1
271,955 - -0.6
272,049 + CSW01_15225 0.17 -1.1
272,281 - CSW01_15225 0.50 -0.1
272,334 - CSW01_15225 0.58 -0.4
272,334 - CSW01_15225 0.58 -1.4
272,418 + CSW01_15225 0.70 -0.5
272,505 + CSW01_15225 0.82 -0.6
272,505 - CSW01_15225 0.82 +0.3
272,646 - +1.3
272,649 + -0.4
272,651 - -1.1
272,658 - +0.3
272,658 - +0.8
272,666 - -0.6
272,684 - -1.4
272,788 + +0.4
272,947 - +2.4
272,957 - +0.1
272,989 - +0.5
272,989 - +0.4
272,989 - +0.7
273,050 + CSW01_15230 0.11 +0.7
273,050 + CSW01_15230 0.11 -0.0
273,050 + CSW01_15230 0.11 +0.1
273,050 + CSW01_15230 0.11 +1.0
273,058 - CSW01_15230 0.11 -1.0
273,058 - CSW01_15230 0.11 +0.9
273,058 - CSW01_15230 0.11 +1.2
273,058 - CSW01_15230 0.11 +2.0
273,083 + CSW01_15230 0.13 +0.1
273,115 + CSW01_15230 0.14 -0.2
273,136 - CSW01_15230 0.15 -0.2
273,153 + CSW01_15230 0.16 +0.6
273,262 - CSW01_15230 0.21 -0.8
273,315 + CSW01_15230 0.23 +1.3
273,357 - CSW01_15230 0.25 -0.2
273,362 - CSW01_15230 0.25 +0.2
273,372 - CSW01_15230 0.26 -0.5
273,372 - CSW01_15230 0.26 -0.1
273,372 - CSW01_15230 0.26 +0.5
273,372 - CSW01_15230 0.26 -0.5
273,377 - CSW01_15230 0.26 +0.3
273,519 + CSW01_15230 0.33 +0.9
273,569 - CSW01_15230 0.35 -0.5

Or see this region's nucleotide sequence