Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15160

Experiment: ICP3_phage_411_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15150 and CSW01_15155 are separated by 117 nucleotidesCSW01_15155 and CSW01_15160 are separated by 244 nucleotidesCSW01_15160 and CSW01_15165 overlap by 20 nucleotidesCSW01_15165 and CSW01_15170 are separated by 2 nucleotides CSW01_15150: CSW01_15150 - hypothetical protein, at 257,510 to 257,806 _15150 CSW01_15155: CSW01_15155 - phosphoribosyl-AMP cyclohydrolase, at 257,924 to 258,493 _15155 CSW01_15160: CSW01_15160 - sensor histidine kinase, at 258,738 to 260,387 _15160 CSW01_15165: CSW01_15165 - DNA-binding response regulator, at 260,368 to 261,042 _15165 CSW01_15170: CSW01_15170 - hypothetical protein, at 261,045 to 261,674 _15170 Position (kb) 258 259 260 261Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 257.785 kb on + strandat 257.840 kb on + strandat 257.840 kb on + strandat 257.954 kb on + strandat 257.962 kb on - strandat 257.962 kb on - strandat 258.010 kb on - strand, within CSW01_15155at 258.064 kb on + strand, within CSW01_15155at 258.171 kb on + strand, within CSW01_15155at 258.221 kb on + strand, within CSW01_15155at 258.221 kb on + strand, within CSW01_15155at 258.221 kb on + strand, within CSW01_15155at 258.229 kb on - strand, within CSW01_15155at 258.231 kb on + strand, within CSW01_15155at 258.303 kb on + strand, within CSW01_15155at 258.398 kb on + strand, within CSW01_15155at 258.401 kb on + strand, within CSW01_15155at 258.444 kb on - strandat 258.444 kb on - strandat 258.472 kb on + strandat 258.480 kb on - strandat 258.504 kb on + strandat 258.504 kb on + strandat 258.512 kb on - strandat 258.512 kb on - strandat 258.512 kb on - strandat 258.523 kb on + strandat 258.523 kb on + strandat 258.531 kb on - strandat 258.531 kb on - strandat 258.533 kb on + strandat 258.533 kb on + strandat 258.560 kb on - strandat 258.631 kb on - strandat 258.638 kb on + strandat 258.648 kb on + strandat 258.718 kb on + strandat 258.745 kb on - strandat 258.836 kb on + strandat 258.836 kb on + strandat 258.836 kb on + strandat 258.844 kb on - strandat 258.844 kb on - strandat 258.916 kb on + strand, within CSW01_15160at 258.924 kb on - strand, within CSW01_15160at 258.926 kb on + strand, within CSW01_15160at 258.934 kb on - strand, within CSW01_15160at 259.040 kb on - strand, within CSW01_15160at 259.076 kb on + strand, within CSW01_15160at 259.076 kb on - strand, within CSW01_15160at 259.084 kb on - strand, within CSW01_15160at 259.086 kb on - strand, within CSW01_15160at 259.211 kb on - strand, within CSW01_15160at 259.213 kb on + strand, within CSW01_15160at 259.221 kb on - strand, within CSW01_15160at 259.382 kb on + strand, within CSW01_15160at 259.385 kb on + strand, within CSW01_15160at 259.444 kb on - strand, within CSW01_15160at 259.445 kb on + strand, within CSW01_15160at 259.459 kb on + strand, within CSW01_15160at 259.462 kb on + strand, within CSW01_15160at 259.462 kb on + strand, within CSW01_15160at 259.462 kb on + strand, within CSW01_15160at 259.462 kb on + strand, within CSW01_15160at 259.470 kb on - strand, within CSW01_15160at 259.470 kb on - strand, within CSW01_15160at 259.470 kb on - strand, within CSW01_15160at 259.563 kb on - strand, within CSW01_15160at 259.699 kb on + strand, within CSW01_15160at 259.699 kb on + strand, within CSW01_15160at 259.699 kb on + strand, within CSW01_15160at 259.707 kb on - strand, within CSW01_15160at 259.707 kb on - strand, within CSW01_15160at 259.717 kb on - strand, within CSW01_15160at 259.763 kb on + strand, within CSW01_15160at 259.767 kb on - strand, within CSW01_15160at 259.771 kb on - strand, within CSW01_15160at 259.771 kb on - strand, within CSW01_15160at 259.771 kb on - strand, within CSW01_15160at 259.771 kb on - strand, within CSW01_15160at 259.810 kb on - strand, within CSW01_15160at 259.818 kb on - strand, within CSW01_15160at 259.984 kb on + strand, within CSW01_15160at 259.984 kb on + strand, within CSW01_15160at 259.992 kb on - strand, within CSW01_15160at 260.063 kb on + strand, within CSW01_15160at 260.103 kb on + strand, within CSW01_15160at 260.118 kb on - strand, within CSW01_15160at 260.129 kb on + strand, within CSW01_15160at 260.129 kb on + strand, within CSW01_15160at 260.137 kb on - strand, within CSW01_15160at 260.241 kb on + strandat 260.537 kb on - strand, within CSW01_15165at 260.543 kb on + strand, within CSW01_15165at 260.543 kb on + strand, within CSW01_15165at 260.551 kb on - strand, within CSW01_15165at 260.551 kb on - strand, within CSW01_15165at 260.551 kb on - strand, within CSW01_15165at 260.584 kb on + strand, within CSW01_15165at 260.590 kb on + strand, within CSW01_15165at 260.672 kb on - strand, within CSW01_15165at 260.672 kb on - strand, within CSW01_15165at 260.708 kb on - strand, within CSW01_15165at 260.708 kb on - strand, within CSW01_15165at 260.733 kb on - strand, within CSW01_15165at 260.923 kb on + strand, within CSW01_15165at 261.005 kb on - strandat 261.020 kb on - strandat 261.029 kb on - strandat 261.124 kb on + strand, within CSW01_15170at 261.124 kb on + strand, within CSW01_15170at 261.124 kb on + strand, within CSW01_15170at 261.132 kb on - strand, within CSW01_15170at 261.269 kb on + strand, within CSW01_15170at 261.276 kb on + strand, within CSW01_15170at 261.277 kb on - strand, within CSW01_15170at 261.277 kb on - strand, within CSW01_15170at 261.284 kb on - strand, within CSW01_15170at 261.309 kb on - strand, within CSW01_15170at 261.366 kb on - strand, within CSW01_15170at 261.366 kb on - strand, within CSW01_15170at 261.379 kb on - strand, within CSW01_15170

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1
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257,785 + +0.9
257,840 + -0.5
257,840 + +0.4
257,954 + -0.6
257,962 - +1.3
257,962 - -0.2
258,010 - CSW01_15155 0.15 +1.5
258,064 + CSW01_15155 0.25 +0.5
258,171 + CSW01_15155 0.43 +1.0
258,221 + CSW01_15155 0.52 -1.8
258,221 + CSW01_15155 0.52 +1.7
258,221 + CSW01_15155 0.52 -1.6
258,229 - CSW01_15155 0.54 -0.0
258,231 + CSW01_15155 0.54 -2.3
258,303 + CSW01_15155 0.66 -2.2
258,398 + CSW01_15155 0.83 -2.5
258,401 + CSW01_15155 0.84 -2.1
258,444 - -2.0
258,444 - +0.2
258,472 + -0.4
258,480 - +1.7
258,504 + +0.3
258,504 + -0.0
258,512 - +0.5
258,512 - -0.5
258,512 - +0.7
258,523 + -0.5
258,523 + +1.7
258,531 - -0.8
258,531 - +2.1
258,533 + +0.5
258,533 + -0.9
258,560 - +0.5
258,631 - +0.9
258,638 + +1.0
258,648 + -2.5
258,718 + -0.9
258,745 - +1.5
258,836 + -1.3
258,836 + +0.1
258,836 + +1.6
258,844 - -0.8
258,844 - +1.2
258,916 + CSW01_15160 0.11 +0.3
258,924 - CSW01_15160 0.11 -2.6
258,926 + CSW01_15160 0.11 +1.6
258,934 - CSW01_15160 0.12 +0.0
259,040 - CSW01_15160 0.18 +1.6
259,076 + CSW01_15160 0.20 +0.6
259,076 - CSW01_15160 0.20 -1.0
259,084 - CSW01_15160 0.21 -0.3
259,086 - CSW01_15160 0.21 -0.6
259,211 - CSW01_15160 0.29 -0.6
259,213 + CSW01_15160 0.29 -1.1
259,221 - CSW01_15160 0.29 -0.4
259,382 + CSW01_15160 0.39 -0.8
259,385 + CSW01_15160 0.39 +1.1
259,444 - CSW01_15160 0.43 +0.5
259,445 + CSW01_15160 0.43 +1.3
259,459 + CSW01_15160 0.44 -1.0
259,462 + CSW01_15160 0.44 +0.2
259,462 + CSW01_15160 0.44 -1.4
259,462 + CSW01_15160 0.44 +1.3
259,462 + CSW01_15160 0.44 +0.8
259,470 - CSW01_15160 0.44 +3.3
259,470 - CSW01_15160 0.44 -0.0
259,470 - CSW01_15160 0.44 +1.2
259,563 - CSW01_15160 0.50 -0.3
259,699 + CSW01_15160 0.58 -2.7
259,699 + CSW01_15160 0.58 -0.1
259,699 + CSW01_15160 0.58 +0.2
259,707 - CSW01_15160 0.59 -0.4
259,707 - CSW01_15160 0.59 +1.1
259,717 - CSW01_15160 0.59 +0.5
259,763 + CSW01_15160 0.62 -1.6
259,767 - CSW01_15160 0.62 +1.7
259,771 - CSW01_15160 0.63 -3.1
259,771 - CSW01_15160 0.63 +0.7
259,771 - CSW01_15160 0.63 +1.0
259,771 - CSW01_15160 0.63 +0.7
259,810 - CSW01_15160 0.65 +1.5
259,818 - CSW01_15160 0.65 -1.0
259,984 + CSW01_15160 0.76 +0.1
259,984 + CSW01_15160 0.76 -0.3
259,992 - CSW01_15160 0.76 -1.9
260,063 + CSW01_15160 0.80 -1.2
260,103 + CSW01_15160 0.83 -0.9
260,118 - CSW01_15160 0.84 +1.9
260,129 + CSW01_15160 0.84 +0.5
260,129 + CSW01_15160 0.84 -0.5
260,137 - CSW01_15160 0.85 +0.0
260,241 + +0.1
260,537 - CSW01_15165 0.25 +1.8
260,543 + CSW01_15165 0.26 -0.9
260,543 + CSW01_15165 0.26 -0.5
260,551 - CSW01_15165 0.27 -1.1
260,551 - CSW01_15165 0.27 -1.1
260,551 - CSW01_15165 0.27 -3.0
260,584 + CSW01_15165 0.32 +0.8
260,590 + CSW01_15165 0.33 -1.1
260,672 - CSW01_15165 0.45 -0.8
260,672 - CSW01_15165 0.45 +0.6
260,708 - CSW01_15165 0.50 -1.5
260,708 - CSW01_15165 0.50 -2.0
260,733 - CSW01_15165 0.54 -2.2
260,923 + CSW01_15165 0.82 -1.0
261,005 - +1.1
261,020 - -0.5
261,029 - +0.1
261,124 + CSW01_15170 0.13 -3.5
261,124 + CSW01_15170 0.13 +1.7
261,124 + CSW01_15170 0.13 -0.4
261,132 - CSW01_15170 0.14 +1.3
261,269 + CSW01_15170 0.36 -0.5
261,276 + CSW01_15170 0.37 +0.4
261,277 - CSW01_15170 0.37 +0.3
261,277 - CSW01_15170 0.37 -3.0
261,284 - CSW01_15170 0.38 -0.9
261,309 - CSW01_15170 0.42 -0.6
261,366 - CSW01_15170 0.51 +0.3
261,366 - CSW01_15170 0.51 -1.8
261,379 - CSW01_15170 0.53 +1.8

Or see this region's nucleotide sequence