Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14945

Experiment: ICP3_phage_411_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14940 and CSW01_14945 overlap by 12 nucleotidesCSW01_14945 and CSW01_14950 are separated by 182 nucleotides CSW01_14940: CSW01_14940 - bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase, at 207,092 to 208,576 _14940 CSW01_14945: CSW01_14945 - 2-hydroxyacid dehydrogenase, at 208,565 to 209,560 _14945 CSW01_14950: CSW01_14950 - sodium:proton antiporter, at 209,743 to 211,086 _14950 Position (kb) 208 209 210Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 207.590 kb on - strand, within CSW01_14940at 207.648 kb on - strand, within CSW01_14940at 207.657 kb on + strand, within CSW01_14940at 207.670 kb on - strand, within CSW01_14940at 207.705 kb on + strand, within CSW01_14940at 207.712 kb on - strand, within CSW01_14940at 207.712 kb on - strand, within CSW01_14940at 207.712 kb on - strand, within CSW01_14940at 207.720 kb on + strand, within CSW01_14940at 207.756 kb on - strand, within CSW01_14940at 207.756 kb on - strand, within CSW01_14940at 207.791 kb on - strand, within CSW01_14940at 207.822 kb on - strand, within CSW01_14940at 207.853 kb on - strand, within CSW01_14940at 207.868 kb on + strand, within CSW01_14940at 207.896 kb on + strand, within CSW01_14940at 207.921 kb on - strand, within CSW01_14940at 207.923 kb on + strand, within CSW01_14940at 207.926 kb on - strand, within CSW01_14940at 207.931 kb on - strand, within CSW01_14940at 207.931 kb on - strand, within CSW01_14940at 207.933 kb on + strand, within CSW01_14940at 207.935 kb on + strand, within CSW01_14940at 207.948 kb on + strand, within CSW01_14940at 207.973 kb on - strand, within CSW01_14940at 208.041 kb on + strand, within CSW01_14940at 208.046 kb on - strand, within CSW01_14940at 208.079 kb on - strand, within CSW01_14940at 208.113 kb on + strand, within CSW01_14940at 208.148 kb on - strand, within CSW01_14940at 208.176 kb on + strand, within CSW01_14940at 208.317 kb on - strand, within CSW01_14940at 208.359 kb on + strand, within CSW01_14940at 208.359 kb on + strand, within CSW01_14940at 208.445 kb on + strandat 208.483 kb on + strandat 208.483 kb on + strandat 208.483 kb on + strandat 208.483 kb on + strandat 208.491 kb on - strandat 208.491 kb on - strandat 208.537 kb on - strandat 208.677 kb on + strand, within CSW01_14945at 208.791 kb on - strand, within CSW01_14945at 208.791 kb on - strand, within CSW01_14945at 208.791 kb on - strand, within CSW01_14945at 208.821 kb on + strand, within CSW01_14945at 208.954 kb on - strand, within CSW01_14945at 208.959 kb on + strand, within CSW01_14945at 208.964 kb on + strand, within CSW01_14945at 208.967 kb on - strand, within CSW01_14945at 208.978 kb on + strand, within CSW01_14945at 208.987 kb on + strand, within CSW01_14945at 208.987 kb on + strand, within CSW01_14945at 208.987 kb on + strand, within CSW01_14945at 208.987 kb on + strand, within CSW01_14945at 208.987 kb on + strand, within CSW01_14945at 208.987 kb on + strand, within CSW01_14945at 208.995 kb on - strand, within CSW01_14945at 208.995 kb on - strand, within CSW01_14945at 208.995 kb on - strand, within CSW01_14945at 208.995 kb on - strand, within CSW01_14945at 208.995 kb on - strand, within CSW01_14945at 208.995 kb on - strand, within CSW01_14945at 208.995 kb on - strand, within CSW01_14945at 208.995 kb on - strand, within CSW01_14945at 208.995 kb on - strand, within CSW01_14945at 209.006 kb on - strand, within CSW01_14945at 209.035 kb on + strand, within CSW01_14945at 209.043 kb on - strand, within CSW01_14945at 209.048 kb on + strand, within CSW01_14945at 209.142 kb on - strand, within CSW01_14945at 209.150 kb on + strand, within CSW01_14945at 209.323 kb on + strand, within CSW01_14945at 209.336 kb on - strand, within CSW01_14945at 209.336 kb on - strand, within CSW01_14945at 209.341 kb on - strand, within CSW01_14945at 209.361 kb on + strand, within CSW01_14945at 209.361 kb on + strand, within CSW01_14945at 209.369 kb on - strand, within CSW01_14945at 209.369 kb on - strand, within CSW01_14945at 209.379 kb on + strand, within CSW01_14945at 209.417 kb on - strand, within CSW01_14945at 209.493 kb on - strandat 209.581 kb on - strandat 209.595 kb on - strandat 209.637 kb on + strandat 209.645 kb on - strandat 209.690 kb on + strandat 209.697 kb on + strandat 209.697 kb on + strandat 209.697 kb on + strandat 209.705 kb on - strandat 209.783 kb on + strandat 209.783 kb on + strandat 209.791 kb on - strandat 209.791 kb on - strandat 209.862 kb on - strandat 209.931 kb on - strand, within CSW01_14950at 209.972 kb on + strand, within CSW01_14950at 209.972 kb on + strand, within CSW01_14950at 209.972 kb on + strand, within CSW01_14950at 209.972 kb on + strand, within CSW01_14950at 209.974 kb on + strand, within CSW01_14950at 209.977 kb on + strand, within CSW01_14950at 209.980 kb on - strand, within CSW01_14950at 209.980 kb on - strand, within CSW01_14950at 209.980 kb on - strand, within CSW01_14950at 209.980 kb on - strand, within CSW01_14950at 209.980 kb on - strand, within CSW01_14950at 209.980 kb on - strand, within CSW01_14950at 209.980 kb on - strand, within CSW01_14950at 209.980 kb on - strand, within CSW01_14950at 209.980 kb on - strand, within CSW01_14950at 210.027 kb on - strand, within CSW01_14950at 210.148 kb on + strand, within CSW01_14950at 210.242 kb on + strand, within CSW01_14950at 210.322 kb on - strand, within CSW01_14950at 210.331 kb on - strand, within CSW01_14950at 210.394 kb on + strand, within CSW01_14950at 210.410 kb on + strand, within CSW01_14950at 210.441 kb on + strand, within CSW01_14950at 210.449 kb on + strand, within CSW01_14950at 210.505 kb on - strand, within CSW01_14950

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1
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207,590 - CSW01_14940 0.34 +1.4
207,648 - CSW01_14940 0.37 +1.2
207,657 + CSW01_14940 0.38 +2.1
207,670 - CSW01_14940 0.39 +0.7
207,705 + CSW01_14940 0.41 -0.6
207,712 - CSW01_14940 0.42 +0.6
207,712 - CSW01_14940 0.42 -2.0
207,712 - CSW01_14940 0.42 -0.6
207,720 + CSW01_14940 0.42 +1.1
207,756 - CSW01_14940 0.45 -2.1
207,756 - CSW01_14940 0.45 -3.6
207,791 - CSW01_14940 0.47 -0.9
207,822 - CSW01_14940 0.49 -0.1
207,853 - CSW01_14940 0.51 +0.4
207,868 + CSW01_14940 0.52 -1.2
207,896 + CSW01_14940 0.54 +2.4
207,921 - CSW01_14940 0.56 +0.9
207,923 + CSW01_14940 0.56 -1.8
207,926 - CSW01_14940 0.56 +0.8
207,931 - CSW01_14940 0.56 +1.5
207,931 - CSW01_14940 0.56 +1.2
207,933 + CSW01_14940 0.57 +0.9
207,935 + CSW01_14940 0.57 +0.0
207,948 + CSW01_14940 0.58 +1.2
207,973 - CSW01_14940 0.59 +1.4
208,041 + CSW01_14940 0.64 -1.8
208,046 - CSW01_14940 0.64 -0.1
208,079 - CSW01_14940 0.66 +0.8
208,113 + CSW01_14940 0.69 +0.7
208,148 - CSW01_14940 0.71 +1.5
208,176 + CSW01_14940 0.73 +1.3
208,317 - CSW01_14940 0.82 +1.1
208,359 + CSW01_14940 0.85 -0.1
208,359 + CSW01_14940 0.85 -1.3
208,445 + -2.0
208,483 + +1.2
208,483 + +1.4
208,483 + +0.8
208,483 + +0.4
208,491 - +0.8
208,491 - +0.7
208,537 - -2.5
208,677 + CSW01_14945 0.11 +0.4
208,791 - CSW01_14945 0.23 +1.0
208,791 - CSW01_14945 0.23 +0.6
208,791 - CSW01_14945 0.23 -0.8
208,821 + CSW01_14945 0.26 -1.3
208,954 - CSW01_14945 0.39 +0.1
208,959 + CSW01_14945 0.40 -2.7
208,964 + CSW01_14945 0.40 -1.1
208,967 - CSW01_14945 0.40 +1.3
208,978 + CSW01_14945 0.41 -3.1
208,987 + CSW01_14945 0.42 +0.7
208,987 + CSW01_14945 0.42 -1.1
208,987 + CSW01_14945 0.42 -0.7
208,987 + CSW01_14945 0.42 -0.3
208,987 + CSW01_14945 0.42 -0.8
208,987 + CSW01_14945 0.42 +1.3
208,995 - CSW01_14945 0.43 -1.4
208,995 - CSW01_14945 0.43 -0.5
208,995 - CSW01_14945 0.43 -2.8
208,995 - CSW01_14945 0.43 -1.1
208,995 - CSW01_14945 0.43 +0.2
208,995 - CSW01_14945 0.43 -1.4
208,995 - CSW01_14945 0.43 -2.4
208,995 - CSW01_14945 0.43 -2.1
208,995 - CSW01_14945 0.43 +0.4
209,006 - CSW01_14945 0.44 +0.4
209,035 + CSW01_14945 0.47 -0.7
209,043 - CSW01_14945 0.48 -2.7
209,048 + CSW01_14945 0.48 +1.0
209,142 - CSW01_14945 0.58 +0.1
209,150 + CSW01_14945 0.59 +1.2
209,323 + CSW01_14945 0.76 +0.4
209,336 - CSW01_14945 0.77 -0.1
209,336 - CSW01_14945 0.77 +0.8
209,341 - CSW01_14945 0.78 -0.6
209,361 + CSW01_14945 0.80 +0.0
209,361 + CSW01_14945 0.80 -0.4
209,369 - CSW01_14945 0.81 +0.2
209,369 - CSW01_14945 0.81 -2.8
209,379 + CSW01_14945 0.82 +0.5
209,417 - CSW01_14945 0.86 +0.0
209,493 - +1.4
209,581 - -0.1
209,595 - -0.1
209,637 + +0.8
209,645 - -0.1
209,690 + +0.9
209,697 + +1.4
209,697 + +0.2
209,697 + -2.8
209,705 - -2.6
209,783 + -2.1
209,783 + -0.1
209,791 - -0.4
209,791 - -0.0
209,862 - -0.2
209,931 - CSW01_14950 0.14 -0.3
209,972 + CSW01_14950 0.17 -2.5
209,972 + CSW01_14950 0.17 -2.0
209,972 + CSW01_14950 0.17 -2.2
209,972 + CSW01_14950 0.17 -0.1
209,974 + CSW01_14950 0.17 -2.3
209,977 + CSW01_14950 0.17 +0.5
209,980 - CSW01_14950 0.18 +0.2
209,980 - CSW01_14950 0.18 -2.2
209,980 - CSW01_14950 0.18 -1.5
209,980 - CSW01_14950 0.18 -1.4
209,980 - CSW01_14950 0.18 -0.6
209,980 - CSW01_14950 0.18 -0.6
209,980 - CSW01_14950 0.18 +0.3
209,980 - CSW01_14950 0.18 +1.3
209,980 - CSW01_14950 0.18 +1.2
210,027 - CSW01_14950 0.21 -2.1
210,148 + CSW01_14950 0.30 -0.0
210,242 + CSW01_14950 0.37 +0.0
210,322 - CSW01_14950 0.43 +1.1
210,331 - CSW01_14950 0.44 -1.1
210,394 + CSW01_14950 0.48 +2.0
210,410 + CSW01_14950 0.50 +0.1
210,441 + CSW01_14950 0.52 -3.9
210,449 + CSW01_14950 0.53 -2.1
210,505 - CSW01_14950 0.57 +1.0

Or see this region's nucleotide sequence