Experiment: ICP3_phage_411_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_14800 and CSW01_14805 are separated by 78 nucleotides CSW01_14805 and CSW01_14810 are separated by 471 nucleotides CSW01_14810 and CSW01_14815 are separated by 237 nucleotides
CSW01_14800: CSW01_14800 - transposase, at 177,190 to 178,425
_14800
CSW01_14805: CSW01_14805 - tryptophanase, at 178,504 to 179,922
_14805
CSW01_14810: CSW01_14810 - tryptophanase leader peptide, at 180,394 to 180,465
_14810
CSW01_14815: CSW01_14815 - hypothetical protein, at 180,703 to 180,915
_14815
Position (kb) 178
179
180 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 177.529 kb on + strand, within CSW01_14800 at 177.529 kb on + strand, within CSW01_14800 at 177.577 kb on + strand, within CSW01_14800 at 177.868 kb on + strand, within CSW01_14800 at 177.900 kb on + strand, within CSW01_14800 at 177.949 kb on + strand, within CSW01_14800 at 177.993 kb on - strand, within CSW01_14800 at 178.049 kb on - strand, within CSW01_14800 at 178.169 kb on - strand, within CSW01_14800 at 178.193 kb on + strand, within CSW01_14800 at 178.219 kb on - strand, within CSW01_14800 at 178.279 kb on - strand, within CSW01_14800 at 178.287 kb on + strand, within CSW01_14800 at 178.287 kb on + strand, within CSW01_14800 at 178.295 kb on - strand, within CSW01_14800 at 178.319 kb on + strand at 178.384 kb on - strand at 178.564 kb on + strand at 178.564 kb on + strand at 178.571 kb on + strand at 178.579 kb on - strand at 178.677 kb on - strand, within CSW01_14805 at 178.743 kb on - strand, within CSW01_14805 at 178.783 kb on + strand, within CSW01_14805 at 178.783 kb on + strand, within CSW01_14805 at 178.824 kb on - strand, within CSW01_14805 at 178.892 kb on - strand, within CSW01_14805 at 178.913 kb on - strand, within CSW01_14805 at 178.954 kb on + strand, within CSW01_14805 at 179.007 kb on - strand, within CSW01_14805 at 179.048 kb on + strand, within CSW01_14805 at 179.083 kb on + strand, within CSW01_14805 at 179.083 kb on + strand, within CSW01_14805 at 179.135 kb on - strand, within CSW01_14805 at 179.167 kb on - strand, within CSW01_14805 at 179.194 kb on + strand, within CSW01_14805 at 179.288 kb on + strand, within CSW01_14805 at 179.337 kb on - strand, within CSW01_14805 at 179.375 kb on + strand, within CSW01_14805 at 179.477 kb on + strand, within CSW01_14805 at 179.500 kb on + strand, within CSW01_14805 at 179.500 kb on + strand, within CSW01_14805 at 179.508 kb on - strand, within CSW01_14805 at 179.594 kb on + strand, within CSW01_14805 at 179.604 kb on + strand, within CSW01_14805 at 179.612 kb on - strand, within CSW01_14805 at 179.666 kb on + strand, within CSW01_14805 at 179.698 kb on + strand, within CSW01_14805 at 179.706 kb on - strand, within CSW01_14805 at 179.707 kb on - strand, within CSW01_14805 at 179.714 kb on + strand, within CSW01_14805 at 179.756 kb on + strand, within CSW01_14805 at 179.756 kb on + strand, within CSW01_14805 at 179.764 kb on - strand, within CSW01_14805 at 179.775 kb on + strand, within CSW01_14805 at 179.775 kb on + strand, within CSW01_14805 at 179.790 kb on + strand at 179.795 kb on - strand at 179.810 kb on + strand at 179.819 kb on - strand at 179.847 kb on + strand at 179.855 kb on - strand at 179.860 kb on + strand at 179.860 kb on - strand at 179.868 kb on - strand at 180.050 kb on - strand at 180.096 kb on + strand at 180.163 kb on + strand at 180.163 kb on + strand at 180.168 kb on + strand at 180.176 kb on - strand at 180.176 kb on - strand at 180.178 kb on - strand at 180.178 kb on - strand at 180.179 kb on + strand at 180.179 kb on + strand at 180.194 kb on + strand at 180.197 kb on - strand at 180.203 kb on - strand at 180.256 kb on + strand at 180.258 kb on - strand at 180.264 kb on - strand at 180.282 kb on + strand at 180.284 kb on + strand at 180.284 kb on + strand at 180.291 kb on - strand at 180.293 kb on + strand at 180.293 kb on - strand at 180.319 kb on + strand at 180.391 kb on + strand at 180.391 kb on + strand at 180.429 kb on + strand, within CSW01_14810 at 180.429 kb on + strand, within CSW01_14810 at 180.437 kb on - strand, within CSW01_14810 at 180.437 kb on - strand, within CSW01_14810 at 180.437 kb on - strand, within CSW01_14810 at 180.448 kb on + strand, within CSW01_14810 at 180.451 kb on - strand, within CSW01_14810 at 180.527 kb on + strand at 180.603 kb on - strand at 180.652 kb on + strand at 180.652 kb on + strand at 180.658 kb on + strand at 180.658 kb on + strand at 180.658 kb on + strand at 180.658 kb on + strand at 180.658 kb on + strand at 180.658 kb on + strand at 180.658 kb on + strand at 180.662 kb on - strand at 180.663 kb on + strand at 180.666 kb on - strand at 180.666 kb on - strand at 180.666 kb on - strand at 180.666 kb on - strand at 180.666 kb on - strand at 180.666 kb on - strand at 180.666 kb on - strand at 180.666 kb on - strand at 180.697 kb on - strand at 180.766 kb on + strand, within CSW01_14815 at 180.786 kb on + strand, within CSW01_14815 at 180.855 kb on + strand, within CSW01_14815 at 180.863 kb on - strand, within CSW01_14815 at 180.888 kb on - strand, within CSW01_14815 at 180.901 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1 remove 177,529 + CSW01_14800 0.27 -0.1 177,529 + CSW01_14800 0.27 -2.9 177,577 + CSW01_14800 0.31 +0.5 177,868 + CSW01_14800 0.55 +1.1 177,900 + CSW01_14800 0.57 +0.1 177,949 + CSW01_14800 0.61 -0.1 177,993 - CSW01_14800 0.65 -2.0 178,049 - CSW01_14800 0.69 -0.8 178,169 - CSW01_14800 0.79 +1.7 178,193 + CSW01_14800 0.81 -1.0 178,219 - CSW01_14800 0.83 -0.5 178,279 - CSW01_14800 0.88 +1.0 178,287 + CSW01_14800 0.89 +1.7 178,287 + CSW01_14800 0.89 -1.0 178,295 - CSW01_14800 0.89 -0.8 178,319 + +0.5 178,384 - -1.6 178,564 + +0.3 178,564 + +1.5 178,571 + +0.8 178,579 - -0.2 178,677 - CSW01_14805 0.12 -0.0 178,743 - CSW01_14805 0.17 +1.2 178,783 + CSW01_14805 0.20 +0.4 178,783 + CSW01_14805 0.20 +1.0 178,824 - CSW01_14805 0.23 -0.3 178,892 - CSW01_14805 0.27 -0.8 178,913 - CSW01_14805 0.29 +0.7 178,954 + CSW01_14805 0.32 +0.7 179,007 - CSW01_14805 0.35 -1.8 179,048 + CSW01_14805 0.38 -0.2 179,083 + CSW01_14805 0.41 -1.6 179,083 + CSW01_14805 0.41 -2.2 179,135 - CSW01_14805 0.44 -1.1 179,167 - CSW01_14805 0.47 +0.9 179,194 + CSW01_14805 0.49 +0.3 179,288 + CSW01_14805 0.55 -0.9 179,337 - CSW01_14805 0.59 -0.3 179,375 + CSW01_14805 0.61 +0.1 179,477 + CSW01_14805 0.69 -1.7 179,500 + CSW01_14805 0.70 +0.1 179,500 + CSW01_14805 0.70 -1.1 179,508 - CSW01_14805 0.71 -2.5 179,594 + CSW01_14805 0.77 +1.3 179,604 + CSW01_14805 0.78 -1.4 179,612 - CSW01_14805 0.78 -0.3 179,666 + CSW01_14805 0.82 -1.1 179,698 + CSW01_14805 0.84 -1.9 179,706 - CSW01_14805 0.85 -2.4 179,707 - CSW01_14805 0.85 -0.7 179,714 + CSW01_14805 0.85 -2.8 179,756 + CSW01_14805 0.88 -1.2 179,756 + CSW01_14805 0.88 +1.5 179,764 - CSW01_14805 0.89 +0.6 179,775 + CSW01_14805 0.90 -0.7 179,775 + CSW01_14805 0.90 -0.5 179,790 + +1.4 179,795 - -0.8 179,810 + +0.6 179,819 - -1.6 179,847 + +1.3 179,855 - +2.2 179,860 + +0.1 179,860 - -0.5 179,868 - -1.3 180,050 - -0.9 180,096 + +0.9 180,163 + +1.2 180,163 + -0.3 180,168 + +1.0 180,176 - +0.6 180,176 - -0.9 180,178 - -0.1 180,178 - +0.1 180,179 + -2.8 180,179 + -0.2 180,194 + -1.2 180,197 - +0.9 180,203 - +0.0 180,256 + -3.5 180,258 - -1.7 180,264 - +0.2 180,282 + +0.4 180,284 + -1.1 180,284 + +0.7 180,291 - +0.9 180,293 + -0.7 180,293 - +0.4 180,319 + -0.2 180,391 + -2.1 180,391 + -2.9 180,429 + CSW01_14810 0.49 +0.2 180,429 + CSW01_14810 0.49 -1.6 180,437 - CSW01_14810 0.60 -1.0 180,437 - CSW01_14810 0.60 -2.5 180,437 - CSW01_14810 0.60 -0.6 180,448 + CSW01_14810 0.75 +0.2 180,451 - CSW01_14810 0.79 +0.4 180,527 + -1.8 180,603 - -1.0 180,652 + +0.2 180,652 + +1.3 180,658 + +0.2 180,658 + +1.5 180,658 + +0.3 180,658 + -2.5 180,658 + +0.9 180,658 + -0.9 180,658 + +0.2 180,662 - -1.0 180,663 + -0.0 180,666 - -0.0 180,666 - -2.8 180,666 - +2.0 180,666 - +0.2 180,666 - +0.4 180,666 - -0.5 180,666 - +0.1 180,666 - -0.8 180,697 - +0.1 180,766 + CSW01_14815 0.30 +0.9 180,786 + CSW01_14815 0.39 +0.1 180,855 + CSW01_14815 0.71 -2.6 180,863 - CSW01_14815 0.75 -1.0 180,888 - CSW01_14815 0.87 -2.0 180,901 + -2.8
Or see this region's nucleotide sequence