Experiment: ICP3_phage_411_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_14775 and CSW01_14780 overlap by 4 nucleotides CSW01_14780 and CSW01_14785 overlap by 1 nucleotides CSW01_14785 and CSW01_14790 are separated by 146 nucleotides CSW01_14790 and CSW01_14795 are separated by 71 nucleotides
CSW01_14775: CSW01_14775 - Na+/H+ antiporter subunit D, at 171,113 to 172,609
_14775
CSW01_14780: CSW01_14780 - cation:proton antiporter, at 172,606 to 172,959
_14780
CSW01_14785: CSW01_14785 - proton-conducting membrane transporter, at 172,959 to 175,634
_14785
CSW01_14790: CSW01_14790 - hypothetical protein, at 175,781 to 175,981
_14790
CSW01_14795: CSW01_14795 - universal stress protein, at 176,053 to 176,994
_14795
Position (kb) 172
173
174
175
176 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 171.971 kb on + strand, within CSW01_14775 at 171.982 kb on - strand, within CSW01_14775 at 171.993 kb on + strand, within CSW01_14775 at 172.028 kb on + strand, within CSW01_14775 at 172.051 kb on - strand, within CSW01_14775 at 172.062 kb on + strand, within CSW01_14775 at 172.062 kb on + strand, within CSW01_14775 at 172.070 kb on - strand, within CSW01_14775 at 172.213 kb on - strand, within CSW01_14775 at 172.243 kb on + strand, within CSW01_14775 at 172.253 kb on + strand, within CSW01_14775 at 172.256 kb on - strand, within CSW01_14775 at 172.265 kb on + strand, within CSW01_14775 at 172.281 kb on - strand, within CSW01_14775 at 172.356 kb on + strand, within CSW01_14775 at 172.423 kb on - strand, within CSW01_14775 at 172.434 kb on - strand, within CSW01_14775 at 172.507 kb on + strand at 172.574 kb on + strand at 172.589 kb on + strand at 172.597 kb on - strand at 172.597 kb on - strand at 172.617 kb on + strand at 172.632 kb on + strand at 172.771 kb on + strand, within CSW01_14780 at 172.804 kb on + strand, within CSW01_14780 at 172.804 kb on + strand, within CSW01_14780 at 172.845 kb on + strand, within CSW01_14780 at 172.868 kb on - strand, within CSW01_14780 at 172.997 kb on + strand at 173.000 kb on - strand at 173.000 kb on - strand at 173.100 kb on - strand at 173.131 kb on - strand at 173.150 kb on + strand at 173.164 kb on + strand at 173.172 kb on + strand at 173.180 kb on - strand at 173.219 kb on + strand at 173.224 kb on + strand at 173.264 kb on - strand, within CSW01_14785 at 173.285 kb on + strand, within CSW01_14785 at 173.293 kb on - strand, within CSW01_14785 at 173.298 kb on - strand, within CSW01_14785 at 173.309 kb on + strand, within CSW01_14785 at 173.320 kb on + strand, within CSW01_14785 at 173.330 kb on + strand, within CSW01_14785 at 173.557 kb on + strand, within CSW01_14785 at 173.557 kb on + strand, within CSW01_14785 at 173.570 kb on + strand, within CSW01_14785 at 173.570 kb on + strand, within CSW01_14785 at 173.570 kb on + strand, within CSW01_14785 at 173.570 kb on + strand, within CSW01_14785 at 173.570 kb on + strand, within CSW01_14785 at 173.578 kb on - strand, within CSW01_14785 at 173.578 kb on - strand, within CSW01_14785 at 173.578 kb on - strand, within CSW01_14785 at 173.578 kb on - strand, within CSW01_14785 at 173.578 kb on - strand, within CSW01_14785 at 173.578 kb on - strand, within CSW01_14785 at 173.609 kb on - strand, within CSW01_14785 at 173.630 kb on + strand, within CSW01_14785 at 173.630 kb on + strand, within CSW01_14785 at 173.638 kb on - strand, within CSW01_14785 at 173.732 kb on + strand, within CSW01_14785 at 173.732 kb on + strand, within CSW01_14785 at 173.732 kb on + strand, within CSW01_14785 at 173.740 kb on - strand, within CSW01_14785 at 173.765 kb on - strand, within CSW01_14785 at 173.765 kb on - strand, within CSW01_14785 at 173.794 kb on + strand, within CSW01_14785 at 173.830 kb on - strand, within CSW01_14785 at 173.832 kb on - strand, within CSW01_14785 at 173.832 kb on - strand, within CSW01_14785 at 173.847 kb on - strand, within CSW01_14785 at 173.943 kb on + strand, within CSW01_14785 at 173.966 kb on + strand, within CSW01_14785 at 173.968 kb on + strand, within CSW01_14785 at 173.974 kb on - strand, within CSW01_14785 at 174.061 kb on + strand, within CSW01_14785 at 174.061 kb on + strand, within CSW01_14785 at 174.061 kb on + strand, within CSW01_14785 at 174.061 kb on + strand, within CSW01_14785 at 174.061 kb on + strand, within CSW01_14785 at 174.061 kb on + strand, within CSW01_14785 at 174.061 kb on + strand, within CSW01_14785 at 174.061 kb on + strand, within CSW01_14785 at 174.061 kb on + strand, within CSW01_14785 at 174.061 kb on + strand, within CSW01_14785 at 174.061 kb on + strand, within CSW01_14785 at 174.061 kb on + strand, within CSW01_14785 at 174.061 kb on + strand, within CSW01_14785 at 174.061 kb on + strand, within CSW01_14785 at 174.061 kb on + strand, within CSW01_14785 at 174.061 kb on + strand, within CSW01_14785 at 174.069 kb on - strand, within CSW01_14785 at 174.069 kb on - strand, within CSW01_14785 at 174.069 kb on - strand, within CSW01_14785 at 174.069 kb on - strand, within CSW01_14785 at 174.069 kb on - strand, within CSW01_14785 at 174.080 kb on + strand, within CSW01_14785 at 174.082 kb on - strand, within CSW01_14785 at 174.099 kb on + strand, within CSW01_14785 at 174.099 kb on + strand, within CSW01_14785 at 174.125 kb on - strand, within CSW01_14785 at 174.130 kb on + strand, within CSW01_14785 at 174.137 kb on + strand, within CSW01_14785 at 174.138 kb on - strand, within CSW01_14785 at 174.151 kb on - strand, within CSW01_14785 at 174.154 kb on + strand, within CSW01_14785 at 174.179 kb on - strand, within CSW01_14785 at 174.200 kb on + strand, within CSW01_14785 at 174.210 kb on + strand, within CSW01_14785 at 174.210 kb on + strand, within CSW01_14785 at 174.238 kb on - strand, within CSW01_14785 at 174.256 kb on + strand, within CSW01_14785 at 174.264 kb on - strand, within CSW01_14785 at 174.264 kb on - strand, within CSW01_14785 at 174.264 kb on - strand, within CSW01_14785 at 174.419 kb on - strand, within CSW01_14785 at 174.492 kb on - strand, within CSW01_14785 at 174.535 kb on + strand, within CSW01_14785 at 174.649 kb on + strand, within CSW01_14785 at 174.649 kb on + strand, within CSW01_14785 at 174.649 kb on + strand, within CSW01_14785 at 174.740 kb on + strand, within CSW01_14785 at 174.748 kb on - strand, within CSW01_14785 at 174.827 kb on + strand, within CSW01_14785 at 174.828 kb on - strand, within CSW01_14785 at 174.849 kb on + strand, within CSW01_14785 at 174.908 kb on - strand, within CSW01_14785 at 174.944 kb on + strand, within CSW01_14785 at 174.949 kb on + strand, within CSW01_14785 at 174.964 kb on + strand, within CSW01_14785 at 175.020 kb on - strand, within CSW01_14785 at 175.059 kb on - strand, within CSW01_14785 at 175.114 kb on + strand, within CSW01_14785 at 175.170 kb on - strand, within CSW01_14785 at 175.247 kb on + strand, within CSW01_14785 at 175.254 kb on - strand, within CSW01_14785 at 175.257 kb on + strand, within CSW01_14785 at 175.309 kb on - strand, within CSW01_14785 at 175.331 kb on + strand, within CSW01_14785 at 175.339 kb on - strand, within CSW01_14785 at 175.339 kb on - strand, within CSW01_14785 at 175.542 kb on + strand at 175.579 kb on + strand at 175.614 kb on - strand at 175.733 kb on - strand at 175.803 kb on + strand, within CSW01_14790 at 175.811 kb on - strand, within CSW01_14790 at 175.811 kb on - strand, within CSW01_14790 at 175.816 kb on + strand, within CSW01_14790 at 175.869 kb on + strand, within CSW01_14790 at 175.901 kb on - strand, within CSW01_14790 at 175.919 kb on + strand, within CSW01_14790 at 175.919 kb on + strand, within CSW01_14790 at 175.920 kb on + strand, within CSW01_14790 at 175.920 kb on + strand, within CSW01_14790 at 175.927 kb on - strand, within CSW01_14790 at 175.927 kb on - strand, within CSW01_14790 at 175.936 kb on - strand, within CSW01_14790 at 175.962 kb on + strand at 176.001 kb on + strand at 176.029 kb on - strand at 176.088 kb on + strand at 176.254 kb on + strand, within CSW01_14795 at 176.270 kb on - strand, within CSW01_14795 at 176.311 kb on - strand, within CSW01_14795 at 176.438 kb on + strand, within CSW01_14795 at 176.479 kb on + strand, within CSW01_14795 at 176.614 kb on + strand, within CSW01_14795 at 176.617 kb on - strand, within CSW01_14795 at 176.622 kb on - strand, within CSW01_14795 at 176.622 kb on - strand, within CSW01_14795 at 176.630 kb on - strand, within CSW01_14795
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1 remove 171,971 + CSW01_14775 0.57 -2.6 171,982 - CSW01_14775 0.58 +0.3 171,993 + CSW01_14775 0.59 -0.5 172,028 + CSW01_14775 0.61 +0.6 172,051 - CSW01_14775 0.63 -1.9 172,062 + CSW01_14775 0.63 +0.5 172,062 + CSW01_14775 0.63 +1.5 172,070 - CSW01_14775 0.64 +1.6 172,213 - CSW01_14775 0.73 -1.8 172,243 + CSW01_14775 0.75 -2.2 172,253 + CSW01_14775 0.76 +1.0 172,256 - CSW01_14775 0.76 -1.2 172,265 + CSW01_14775 0.77 -0.1 172,281 - CSW01_14775 0.78 -0.1 172,356 + CSW01_14775 0.83 +0.2 172,423 - CSW01_14775 0.88 -0.0 172,434 - CSW01_14775 0.88 -0.8 172,507 + +0.8 172,574 + -3.8 172,589 + +0.4 172,597 - -0.5 172,597 - -2.2 172,617 + -0.5 172,632 + +1.3 172,771 + CSW01_14780 0.47 +0.8 172,804 + CSW01_14780 0.56 +0.0 172,804 + CSW01_14780 0.56 -4.0 172,845 + CSW01_14780 0.68 -2.4 172,868 - CSW01_14780 0.74 -3.3 172,997 + -3.1 173,000 - -0.8 173,000 - -1.6 173,100 - -0.1 173,131 - -2.1 173,150 + -1.7 173,164 + +1.7 173,172 + -1.5 173,180 - -0.5 173,219 + -0.3 173,224 + +0.3 173,264 - CSW01_14785 0.11 -2.6 173,285 + CSW01_14785 0.12 -0.3 173,293 - CSW01_14785 0.12 +0.2 173,298 - CSW01_14785 0.13 +1.6 173,309 + CSW01_14785 0.13 +2.4 173,320 + CSW01_14785 0.13 -0.8 173,330 + CSW01_14785 0.14 -3.0 173,557 + CSW01_14785 0.22 +0.6 173,557 + CSW01_14785 0.22 -0.2 173,570 + CSW01_14785 0.23 -0.3 173,570 + CSW01_14785 0.23 -0.3 173,570 + CSW01_14785 0.23 +2.0 173,570 + CSW01_14785 0.23 +0.2 173,570 + CSW01_14785 0.23 -2.7 173,578 - CSW01_14785 0.23 -1.2 173,578 - CSW01_14785 0.23 +0.9 173,578 - CSW01_14785 0.23 +0.9 173,578 - CSW01_14785 0.23 -0.3 173,578 - CSW01_14785 0.23 -1.5 173,578 - CSW01_14785 0.23 -0.3 173,609 - CSW01_14785 0.24 -0.9 173,630 + CSW01_14785 0.25 +2.3 173,630 + CSW01_14785 0.25 -0.1 173,638 - CSW01_14785 0.25 -0.1 173,732 + CSW01_14785 0.29 -2.6 173,732 + CSW01_14785 0.29 -3.2 173,732 + CSW01_14785 0.29 -0.3 173,740 - CSW01_14785 0.29 -0.7 173,765 - CSW01_14785 0.30 +0.6 173,765 - CSW01_14785 0.30 -0.8 173,794 + CSW01_14785 0.31 -2.5 173,830 - CSW01_14785 0.33 +1.4 173,832 - CSW01_14785 0.33 -3.3 173,832 - CSW01_14785 0.33 +0.8 173,847 - CSW01_14785 0.33 -1.8 173,943 + CSW01_14785 0.37 -0.0 173,966 + CSW01_14785 0.38 +1.4 173,968 + CSW01_14785 0.38 -0.1 173,974 - CSW01_14785 0.38 +0.0 174,061 + CSW01_14785 0.41 -0.2 174,061 + CSW01_14785 0.41 +0.2 174,061 + CSW01_14785 0.41 +0.4 174,061 + CSW01_14785 0.41 +0.7 174,061 + CSW01_14785 0.41 -1.0 174,061 + CSW01_14785 0.41 -0.2 174,061 + CSW01_14785 0.41 +1.7 174,061 + CSW01_14785 0.41 -1.1 174,061 + CSW01_14785 0.41 -0.8 174,061 + CSW01_14785 0.41 +1.3 174,061 + CSW01_14785 0.41 -1.6 174,061 + CSW01_14785 0.41 +0.3 174,061 + CSW01_14785 0.41 -2.8 174,061 + CSW01_14785 0.41 +0.0 174,061 + CSW01_14785 0.41 -1.9 174,061 + CSW01_14785 0.41 -0.3 174,069 - CSW01_14785 0.41 +0.5 174,069 - CSW01_14785 0.41 +0.3 174,069 - CSW01_14785 0.41 +0.9 174,069 - CSW01_14785 0.41 +0.1 174,069 - CSW01_14785 0.41 +0.9 174,080 + CSW01_14785 0.42 +1.1 174,082 - CSW01_14785 0.42 -2.3 174,099 + CSW01_14785 0.43 -0.5 174,099 + CSW01_14785 0.43 -0.9 174,125 - CSW01_14785 0.44 +1.0 174,130 + CSW01_14785 0.44 -0.8 174,137 + CSW01_14785 0.44 -1.4 174,138 - CSW01_14785 0.44 -3.5 174,151 - CSW01_14785 0.45 +1.2 174,154 + CSW01_14785 0.45 -0.4 174,179 - CSW01_14785 0.46 -1.1 174,200 + CSW01_14785 0.46 +0.1 174,210 + CSW01_14785 0.47 -0.2 174,210 + CSW01_14785 0.47 +1.0 174,238 - CSW01_14785 0.48 -2.2 174,256 + CSW01_14785 0.48 -0.1 174,264 - CSW01_14785 0.49 -2.7 174,264 - CSW01_14785 0.49 +0.6 174,264 - CSW01_14785 0.49 +0.4 174,419 - CSW01_14785 0.55 -0.9 174,492 - CSW01_14785 0.57 +0.1 174,535 + CSW01_14785 0.59 +0.2 174,649 + CSW01_14785 0.63 -2.4 174,649 + CSW01_14785 0.63 -0.1 174,649 + CSW01_14785 0.63 -0.8 174,740 + CSW01_14785 0.67 -2.5 174,748 - CSW01_14785 0.67 +2.0 174,827 + CSW01_14785 0.70 -1.1 174,828 - CSW01_14785 0.70 +0.8 174,849 + CSW01_14785 0.71 -0.3 174,908 - CSW01_14785 0.73 +0.5 174,944 + CSW01_14785 0.74 -1.2 174,949 + CSW01_14785 0.74 +0.8 174,964 + CSW01_14785 0.75 -0.1 175,020 - CSW01_14785 0.77 -2.4 175,059 - CSW01_14785 0.78 +1.4 175,114 + CSW01_14785 0.81 -1.4 175,170 - CSW01_14785 0.83 +1.3 175,247 + CSW01_14785 0.86 -3.1 175,254 - CSW01_14785 0.86 -0.3 175,257 + CSW01_14785 0.86 +1.1 175,309 - CSW01_14785 0.88 -1.5 175,331 + CSW01_14785 0.89 +0.1 175,339 - CSW01_14785 0.89 +1.1 175,339 - CSW01_14785 0.89 -2.7 175,542 + +0.8 175,579 + +3.2 175,614 - +1.8 175,733 - -0.1 175,803 + CSW01_14790 0.11 -0.4 175,811 - CSW01_14790 0.15 +0.3 175,811 - CSW01_14790 0.15 -1.3 175,816 + CSW01_14790 0.17 -0.8 175,869 + CSW01_14790 0.44 +1.4 175,901 - CSW01_14790 0.60 -2.4 175,919 + CSW01_14790 0.69 -0.4 175,919 + CSW01_14790 0.69 -0.6 175,920 + CSW01_14790 0.69 -2.3 175,920 + CSW01_14790 0.69 +0.3 175,927 - CSW01_14790 0.73 -3.2 175,927 - CSW01_14790 0.73 -1.5 175,936 - CSW01_14790 0.77 +0.9 175,962 + +2.0 176,001 + -0.6 176,029 - +0.8 176,088 + -2.9 176,254 + CSW01_14795 0.21 -0.0 176,270 - CSW01_14795 0.23 -3.1 176,311 - CSW01_14795 0.27 -0.6 176,438 + CSW01_14795 0.41 +0.7 176,479 + CSW01_14795 0.45 +0.7 176,614 + CSW01_14795 0.60 +0.0 176,617 - CSW01_14795 0.60 -0.1 176,622 - CSW01_14795 0.60 -1.3 176,622 - CSW01_14795 0.60 +0.4 176,630 - CSW01_14795 0.61 -0.6
Or see this region's nucleotide sequence