Experiment: ICP3_phage_411_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_14755 and CSW01_14760 are separated by 74 nucleotides CSW01_14760 and CSW01_14765 overlap by 1 nucleotides CSW01_14765 and CSW01_14770 overlap by 41 nucleotides CSW01_14770 and CSW01_14775 overlap by 4 nucleotides
CSW01_14755: CSW01_14755 - oxidoreductase, at 168,619 to 169,971
_14755
CSW01_14760: CSW01_14760 - Na+/H+ antiporter subunit G, at 170,046 to 170,369
_14760
CSW01_14765: CSW01_14765 - cation:proton antiporter, at 170,369 to 170,680
_14765
CSW01_14770: CSW01_14770 - sodium:proton antiporter, at 170,640 to 171,116
_14770
CSW01_14775: CSW01_14775 - Na+/H+ antiporter subunit D, at 171,113 to 172,609
_14775
Position (kb) 170
171
172 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 169.843 kb on + strand at 169.931 kb on + strand at 169.974 kb on - strand at 169.984 kb on + strand at 169.992 kb on - strand at 169.992 kb on - strand at 169.994 kb on + strand at 170.017 kb on - strand at 170.116 kb on + strand, within CSW01_14760 at 170.116 kb on + strand, within CSW01_14760 at 170.116 kb on + strand, within CSW01_14760 at 170.165 kb on + strand, within CSW01_14760 at 170.170 kb on + strand, within CSW01_14760 at 170.178 kb on - strand, within CSW01_14760 at 170.203 kb on + strand, within CSW01_14760 at 170.203 kb on + strand, within CSW01_14760 at 170.221 kb on + strand, within CSW01_14760 at 170.226 kb on + strand, within CSW01_14760 at 170.435 kb on + strand, within CSW01_14765 at 170.435 kb on + strand, within CSW01_14765 at 170.435 kb on + strand, within CSW01_14765 at 170.441 kb on + strand, within CSW01_14765 at 170.443 kb on - strand, within CSW01_14765 at 170.443 kb on - strand, within CSW01_14765 at 170.449 kb on - strand, within CSW01_14765 at 170.558 kb on + strand, within CSW01_14765 at 170.558 kb on + strand, within CSW01_14765 at 170.558 kb on + strand, within CSW01_14765 at 170.558 kb on + strand, within CSW01_14765 at 170.566 kb on - strand, within CSW01_14765 at 170.566 kb on - strand, within CSW01_14765 at 170.566 kb on - strand, within CSW01_14765 at 170.566 kb on - strand, within CSW01_14765 at 170.581 kb on - strand, within CSW01_14765 at 170.640 kb on - strand at 170.713 kb on + strand, within CSW01_14770 at 170.713 kb on + strand, within CSW01_14770 at 170.723 kb on - strand, within CSW01_14770 at 170.807 kb on - strand, within CSW01_14770 at 170.859 kb on - strand, within CSW01_14770 at 170.870 kb on + strand, within CSW01_14770 at 170.898 kb on - strand, within CSW01_14770 at 171.069 kb on - strand at 171.105 kb on + strand at 171.125 kb on + strand at 171.187 kb on - strand at 171.222 kb on + strand at 171.232 kb on - strand at 171.232 kb on - strand at 171.268 kb on + strand, within CSW01_14775 at 171.372 kb on - strand, within CSW01_14775 at 171.398 kb on - strand, within CSW01_14775 at 171.454 kb on + strand, within CSW01_14775 at 171.481 kb on - strand, within CSW01_14775 at 171.501 kb on - strand, within CSW01_14775 at 171.536 kb on - strand, within CSW01_14775 at 171.644 kb on + strand, within CSW01_14775 at 171.746 kb on + strand, within CSW01_14775 at 171.754 kb on - strand, within CSW01_14775 at 171.812 kb on - strand, within CSW01_14775 at 171.828 kb on + strand, within CSW01_14775 at 171.905 kb on + strand, within CSW01_14775 at 171.971 kb on + strand, within CSW01_14775 at 171.982 kb on - strand, within CSW01_14775 at 171.993 kb on + strand, within CSW01_14775 at 172.028 kb on + strand, within CSW01_14775 at 172.051 kb on - strand, within CSW01_14775 at 172.062 kb on + strand, within CSW01_14775 at 172.062 kb on + strand, within CSW01_14775 at 172.070 kb on - strand, within CSW01_14775
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1 remove 169,843 + +0.5 169,931 + -2.8 169,974 - -0.1 169,984 + -0.1 169,992 - -3.0 169,992 - -0.8 169,994 + +0.3 170,017 - +0.6 170,116 + CSW01_14760 0.22 +1.5 170,116 + CSW01_14760 0.22 -0.2 170,116 + CSW01_14760 0.22 +1.0 170,165 + CSW01_14760 0.37 -1.5 170,170 + CSW01_14760 0.38 -2.3 170,178 - CSW01_14760 0.41 -0.5 170,203 + CSW01_14760 0.48 -0.2 170,203 + CSW01_14760 0.48 +0.1 170,221 + CSW01_14760 0.54 -0.3 170,226 + CSW01_14760 0.56 +0.5 170,435 + CSW01_14765 0.21 +0.2 170,435 + CSW01_14765 0.21 +1.6 170,435 + CSW01_14765 0.21 -0.2 170,441 + CSW01_14765 0.23 -0.3 170,443 - CSW01_14765 0.24 -2.5 170,443 - CSW01_14765 0.24 +0.1 170,449 - CSW01_14765 0.26 +1.2 170,558 + CSW01_14765 0.61 -1.5 170,558 + CSW01_14765 0.61 -0.6 170,558 + CSW01_14765 0.61 +1.7 170,558 + CSW01_14765 0.61 +1.6 170,566 - CSW01_14765 0.63 -2.0 170,566 - CSW01_14765 0.63 -1.3 170,566 - CSW01_14765 0.63 -2.2 170,566 - CSW01_14765 0.63 +0.9 170,581 - CSW01_14765 0.68 -0.5 170,640 - +0.7 170,713 + CSW01_14770 0.15 -2.2 170,713 + CSW01_14770 0.15 -1.8 170,723 - CSW01_14770 0.17 -0.0 170,807 - CSW01_14770 0.35 -0.3 170,859 - CSW01_14770 0.46 -2.8 170,870 + CSW01_14770 0.48 -0.6 170,898 - CSW01_14770 0.54 -0.0 171,069 - -1.6 171,105 + -0.4 171,125 + -2.3 171,187 - +0.0 171,222 + -1.1 171,232 - +3.0 171,232 - -1.7 171,268 + CSW01_14775 0.10 -1.5 171,372 - CSW01_14775 0.17 +0.7 171,398 - CSW01_14775 0.19 +0.8 171,454 + CSW01_14775 0.23 +0.6 171,481 - CSW01_14775 0.25 -2.6 171,501 - CSW01_14775 0.26 +1.4 171,536 - CSW01_14775 0.28 -0.2 171,644 + CSW01_14775 0.35 -2.5 171,746 + CSW01_14775 0.42 +0.2 171,754 - CSW01_14775 0.43 +0.5 171,812 - CSW01_14775 0.47 -2.7 171,828 + CSW01_14775 0.48 -0.4 171,905 + CSW01_14775 0.53 +0.2 171,971 + CSW01_14775 0.57 -2.6 171,982 - CSW01_14775 0.58 +0.3 171,993 + CSW01_14775 0.59 -0.5 172,028 + CSW01_14775 0.61 +0.6 172,051 - CSW01_14775 0.63 -1.9 172,062 + CSW01_14775 0.63 +0.5 172,062 + CSW01_14775 0.63 +1.5 172,070 - CSW01_14775 0.64 +1.6
Or see this region's nucleotide sequence