Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14735

Experiment: ICP3_phage_411_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14730 and CSW01_14735 are separated by 173 nucleotidesCSW01_14735 and CSW01_14740 overlap by 4 nucleotides CSW01_14730: CSW01_14730 - C4-dicarboxylate ABC transporter substrate-binding protein, at 159,190 to 160,197 _14730 CSW01_14735: CSW01_14735 - C4-dicarboxylate ABC transporter permease, at 160,371 to 162,512 _14735 CSW01_14740: CSW01_14740 - L-2-hydroxyglutarate oxidase, at 162,509 to 163,720 _14740 Position (kb) 160 161 162 163Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 159.431 kb on - strand, within CSW01_14730at 159.463 kb on + strand, within CSW01_14730at 159.475 kb on + strand, within CSW01_14730at 159.475 kb on + strand, within CSW01_14730at 159.506 kb on - strand, within CSW01_14730at 159.533 kb on + strand, within CSW01_14730at 159.541 kb on - strand, within CSW01_14730at 159.541 kb on - strand, within CSW01_14730at 159.556 kb on + strand, within CSW01_14730at 159.559 kb on - strand, within CSW01_14730at 159.560 kb on + strand, within CSW01_14730at 159.718 kb on - strand, within CSW01_14730at 159.743 kb on + strand, within CSW01_14730at 159.751 kb on - strand, within CSW01_14730at 159.751 kb on - strand, within CSW01_14730at 159.885 kb on - strand, within CSW01_14730at 159.890 kb on - strand, within CSW01_14730at 159.890 kb on - strand, within CSW01_14730at 159.970 kb on + strand, within CSW01_14730at 159.988 kb on - strand, within CSW01_14730at 160.011 kb on + strand, within CSW01_14730at 160.013 kb on + strand, within CSW01_14730at 160.177 kb on + strandat 160.186 kb on + strandat 160.234 kb on + strandat 160.242 kb on - strandat 160.242 kb on - strandat 160.296 kb on - strandat 160.320 kb on - strandat 160.320 kb on - strandat 160.386 kb on - strandat 160.418 kb on - strandat 160.418 kb on - strandat 160.443 kb on - strandat 160.472 kb on - strandat 160.484 kb on + strandat 160.492 kb on - strandat 160.510 kb on + strandat 160.556 kb on + strandat 160.568 kb on + strandat 160.568 kb on + strandat 160.568 kb on + strandat 160.576 kb on - strandat 160.576 kb on - strandat 160.635 kb on + strand, within CSW01_14735at 160.668 kb on - strand, within CSW01_14735at 160.716 kb on + strand, within CSW01_14735at 160.788 kb on - strand, within CSW01_14735at 160.878 kb on + strand, within CSW01_14735at 160.938 kb on + strand, within CSW01_14735at 160.938 kb on + strand, within CSW01_14735at 160.939 kb on + strand, within CSW01_14735at 160.939 kb on + strand, within CSW01_14735at 160.987 kb on + strand, within CSW01_14735at 160.995 kb on - strand, within CSW01_14735at 161.079 kb on + strand, within CSW01_14735at 161.123 kb on + strand, within CSW01_14735at 161.133 kb on - strand, within CSW01_14735at 161.133 kb on - strand, within CSW01_14735at 161.183 kb on - strand, within CSW01_14735at 161.189 kb on + strand, within CSW01_14735at 161.202 kb on + strand, within CSW01_14735at 161.259 kb on + strand, within CSW01_14735at 161.302 kb on + strand, within CSW01_14735at 161.424 kb on + strand, within CSW01_14735at 161.428 kb on + strand, within CSW01_14735at 161.715 kb on + strand, within CSW01_14735at 161.749 kb on + strand, within CSW01_14735at 161.749 kb on + strand, within CSW01_14735at 161.757 kb on - strand, within CSW01_14735at 161.757 kb on - strand, within CSW01_14735at 161.757 kb on - strand, within CSW01_14735at 161.757 kb on - strand, within CSW01_14735at 161.757 kb on - strand, within CSW01_14735at 161.757 kb on - strand, within CSW01_14735at 161.757 kb on - strand, within CSW01_14735at 161.757 kb on - strand, within CSW01_14735at 161.804 kb on + strand, within CSW01_14735at 161.822 kb on + strand, within CSW01_14735at 161.830 kb on - strand, within CSW01_14735at 161.977 kb on - strand, within CSW01_14735at 161.982 kb on - strand, within CSW01_14735at 162.015 kb on + strand, within CSW01_14735at 162.022 kb on + strand, within CSW01_14735at 162.024 kb on - strand, within CSW01_14735at 162.030 kb on - strand, within CSW01_14735at 162.099 kb on + strand, within CSW01_14735at 162.162 kb on + strand, within CSW01_14735at 162.217 kb on + strand, within CSW01_14735at 162.220 kb on + strand, within CSW01_14735at 162.225 kb on - strand, within CSW01_14735at 162.225 kb on - strand, within CSW01_14735at 162.261 kb on + strand, within CSW01_14735at 162.314 kb on - strandat 162.314 kb on - strandat 162.338 kb on + strandat 162.380 kb on - strandat 162.415 kb on + strandat 162.423 kb on - strandat 162.433 kb on - strandat 162.480 kb on - strandat 162.520 kb on - strandat 162.553 kb on + strandat 162.559 kb on - strandat 162.561 kb on - strandat 162.641 kb on + strand, within CSW01_14740at 162.646 kb on + strand, within CSW01_14740at 162.751 kb on + strand, within CSW01_14740at 162.789 kb on + strand, within CSW01_14740at 163.124 kb on - strand, within CSW01_14740at 163.124 kb on - strand, within CSW01_14740at 163.129 kb on - strand, within CSW01_14740at 163.286 kb on - strand, within CSW01_14740at 163.291 kb on - strand, within CSW01_14740at 163.352 kb on + strand, within CSW01_14740at 163.376 kb on - strand, within CSW01_14740at 163.435 kb on + strand, within CSW01_14740at 163.493 kb on - strand, within CSW01_14740

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1
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159,431 - CSW01_14730 0.24 -1.7
159,463 + CSW01_14730 0.27 -2.1
159,475 + CSW01_14730 0.28 -2.1
159,475 + CSW01_14730 0.28 +1.1
159,506 - CSW01_14730 0.31 -2.5
159,533 + CSW01_14730 0.34 -2.1
159,541 - CSW01_14730 0.35 +0.0
159,541 - CSW01_14730 0.35 +1.8
159,556 + CSW01_14730 0.36 -0.1
159,559 - CSW01_14730 0.37 +1.1
159,560 + CSW01_14730 0.37 -0.0
159,718 - CSW01_14730 0.52 -1.5
159,743 + CSW01_14730 0.55 +0.9
159,751 - CSW01_14730 0.56 -2.1
159,751 - CSW01_14730 0.56 -0.5
159,885 - CSW01_14730 0.69 +1.1
159,890 - CSW01_14730 0.69 -0.3
159,890 - CSW01_14730 0.69 +0.6
159,970 + CSW01_14730 0.77 +0.3
159,988 - CSW01_14730 0.79 +0.8
160,011 + CSW01_14730 0.81 -4.2
160,013 + CSW01_14730 0.82 -0.1
160,177 + -1.9
160,186 + +0.6
160,234 + +2.0
160,242 - +1.4
160,242 - +1.8
160,296 - -0.6
160,320 - +0.7
160,320 - -0.2
160,386 - -0.0
160,418 - +1.5
160,418 - +0.2
160,443 - -0.9
160,472 - -1.0
160,484 + -2.3
160,492 - +1.1
160,510 + -2.5
160,556 + +1.2
160,568 + -1.0
160,568 + +1.6
160,568 + -0.4
160,576 - +1.3
160,576 - -0.1
160,635 + CSW01_14735 0.12 -0.5
160,668 - CSW01_14735 0.14 +0.2
160,716 + CSW01_14735 0.16 +0.2
160,788 - CSW01_14735 0.19 -0.0
160,878 + CSW01_14735 0.24 +0.4
160,938 + CSW01_14735 0.26 +0.6
160,938 + CSW01_14735 0.26 +0.4
160,939 + CSW01_14735 0.27 +1.1
160,939 + CSW01_14735 0.27 -1.6
160,987 + CSW01_14735 0.29 +1.8
160,995 - CSW01_14735 0.29 +0.9
161,079 + CSW01_14735 0.33 -2.4
161,123 + CSW01_14735 0.35 -2.5
161,133 - CSW01_14735 0.36 +0.4
161,133 - CSW01_14735 0.36 -3.6
161,183 - CSW01_14735 0.38 +1.0
161,189 + CSW01_14735 0.38 +0.7
161,202 + CSW01_14735 0.39 -0.7
161,259 + CSW01_14735 0.41 -1.3
161,302 + CSW01_14735 0.43 -0.5
161,424 + CSW01_14735 0.49 -1.5
161,428 + CSW01_14735 0.49 +1.0
161,715 + CSW01_14735 0.63 +3.1
161,749 + CSW01_14735 0.64 -0.1
161,749 + CSW01_14735 0.64 +1.5
161,757 - CSW01_14735 0.65 -0.2
161,757 - CSW01_14735 0.65 -0.8
161,757 - CSW01_14735 0.65 +0.2
161,757 - CSW01_14735 0.65 -1.2
161,757 - CSW01_14735 0.65 -2.0
161,757 - CSW01_14735 0.65 -0.5
161,757 - CSW01_14735 0.65 -2.6
161,757 - CSW01_14735 0.65 -1.2
161,804 + CSW01_14735 0.67 -1.5
161,822 + CSW01_14735 0.68 +1.1
161,830 - CSW01_14735 0.68 -2.7
161,977 - CSW01_14735 0.75 -0.5
161,982 - CSW01_14735 0.75 +0.7
162,015 + CSW01_14735 0.77 -2.0
162,022 + CSW01_14735 0.77 -1.5
162,024 - CSW01_14735 0.77 -2.0
162,030 - CSW01_14735 0.77 -0.6
162,099 + CSW01_14735 0.81 +0.4
162,162 + CSW01_14735 0.84 +1.0
162,217 + CSW01_14735 0.86 -2.1
162,220 + CSW01_14735 0.86 +0.2
162,225 - CSW01_14735 0.87 -4.0
162,225 - CSW01_14735 0.87 -2.9
162,261 + CSW01_14735 0.88 +0.2
162,314 - +0.6
162,314 - +0.5
162,338 + +0.5
162,380 - -1.0
162,415 + -1.2
162,423 - +0.1
162,433 - +0.6
162,480 - +2.5
162,520 - +0.9
162,553 + -1.9
162,559 - -0.7
162,561 - +0.6
162,641 + CSW01_14740 0.11 -0.2
162,646 + CSW01_14740 0.11 -0.4
162,751 + CSW01_14740 0.20 -0.4
162,789 + CSW01_14740 0.23 +0.6
163,124 - CSW01_14740 0.51 -0.6
163,124 - CSW01_14740 0.51 -3.3
163,129 - CSW01_14740 0.51 -2.4
163,286 - CSW01_14740 0.64 -3.0
163,291 - CSW01_14740 0.65 +1.7
163,352 + CSW01_14740 0.70 -0.5
163,376 - CSW01_14740 0.72 +0.1
163,435 + CSW01_14740 0.76 +0.2
163,493 - CSW01_14740 0.81 -0.1

Or see this region's nucleotide sequence