Experiment: ICP3_phage_411_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_14410 and CSW01_14415 are separated by 304 nucleotides CSW01_14415 and CSW01_14420 are separated by 191 nucleotides CSW01_14420 and CSW01_14425 are separated by 117 nucleotides
CSW01_14410: CSW01_14410 - sodium-independent anion transporter, at 86,657 to 88,318
_14410
CSW01_14415: CSW01_14415 - 1,4-alpha-glucan branching protein, at 88,623 to 88,955
_14415
CSW01_14420: CSW01_14420 - peptidase M23, at 89,147 to 90,439
_14420
CSW01_14425: CSW01_14425 - GGDEF domain-containing protein, at 90,557 to 92,380
_14425
Position (kb) 89
90
91 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 88.275 kb on + strand at 88.381 kb on + strand at 88.393 kb on - strand at 88.491 kb on + strand at 88.874 kb on - strand, within CSW01_14415 at 88.997 kb on + strand at 88.997 kb on + strand at 88.997 kb on + strand at 88.997 kb on + strand at 89.083 kb on + strand at 89.110 kb on - strand at 89.110 kb on - strand at 89.122 kb on - strand at 89.262 kb on - strand at 89.267 kb on + strand at 89.322 kb on - strand, within CSW01_14420 at 89.334 kb on + strand, within CSW01_14420 at 89.334 kb on + strand, within CSW01_14420 at 89.352 kb on - strand, within CSW01_14420 at 89.352 kb on - strand, within CSW01_14420 at 89.372 kb on + strand, within CSW01_14420 at 89.395 kb on + strand, within CSW01_14420 at 89.494 kb on + strand, within CSW01_14420 at 89.576 kb on + strand, within CSW01_14420 at 89.584 kb on - strand, within CSW01_14420 at 89.908 kb on + strand, within CSW01_14420 at 90.010 kb on - strand, within CSW01_14420 at 90.071 kb on + strand, within CSW01_14420 at 90.071 kb on + strand, within CSW01_14420 at 90.071 kb on + strand, within CSW01_14420 at 90.081 kb on + strand, within CSW01_14420 at 90.176 kb on + strand, within CSW01_14420 at 90.350 kb on - strand at 90.378 kb on - strand at 90.400 kb on + strand at 90.602 kb on + strand at 90.660 kb on + strand at 90.668 kb on - strand at 90.682 kb on + strand at 90.774 kb on + strand, within CSW01_14425 at 90.842 kb on + strand, within CSW01_14425 at 90.846 kb on - strand, within CSW01_14425 at 90.924 kb on + strand, within CSW01_14425 at 90.924 kb on + strand, within CSW01_14425 at 90.924 kb on + strand, within CSW01_14425 at 90.932 kb on - strand, within CSW01_14425 at 90.952 kb on + strand, within CSW01_14425 at 90.960 kb on - strand, within CSW01_14425 at 91.158 kb on - strand, within CSW01_14425 at 91.278 kb on + strand, within CSW01_14425 at 91.286 kb on - strand, within CSW01_14425 at 91.286 kb on - strand, within CSW01_14425 at 91.286 kb on - strand, within CSW01_14425 at 91.286 kb on - strand, within CSW01_14425 at 91.313 kb on - strand, within CSW01_14425
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1 remove 88,275 + -0.3 88,381 + -1.3 88,393 - -0.5 88,491 + +0.2 88,874 - CSW01_14415 0.75 +0.6 88,997 + -0.1 88,997 + +0.7 88,997 + -1.6 88,997 + +0.5 89,083 + +2.6 89,110 - -2.2 89,110 - -1.7 89,122 - +0.2 89,262 - -2.3 89,267 + -2.6 89,322 - CSW01_14420 0.14 +1.8 89,334 + CSW01_14420 0.14 +0.7 89,334 + CSW01_14420 0.14 -0.9 89,352 - CSW01_14420 0.16 +1.0 89,352 - CSW01_14420 0.16 +1.1 89,372 + CSW01_14420 0.17 +0.0 89,395 + CSW01_14420 0.19 +0.3 89,494 + CSW01_14420 0.27 +2.0 89,576 + CSW01_14420 0.33 -0.5 89,584 - CSW01_14420 0.34 -0.8 89,908 + CSW01_14420 0.59 +0.6 90,010 - CSW01_14420 0.67 -2.5 90,071 + CSW01_14420 0.71 +1.4 90,071 + CSW01_14420 0.71 +0.9 90,071 + CSW01_14420 0.71 +0.1 90,081 + CSW01_14420 0.72 +1.6 90,176 + CSW01_14420 0.80 -0.6 90,350 - +0.7 90,378 - +0.8 90,400 + -0.0 90,602 + +0.9 90,660 + +1.3 90,668 - +0.9 90,682 + -2.1 90,774 + CSW01_14425 0.12 -2.9 90,842 + CSW01_14425 0.16 +1.2 90,846 - CSW01_14425 0.16 -0.7 90,924 + CSW01_14425 0.20 +0.4 90,924 + CSW01_14425 0.20 +0.4 90,924 + CSW01_14425 0.20 +0.3 90,932 - CSW01_14425 0.21 +1.3 90,952 + CSW01_14425 0.22 -1.8 90,960 - CSW01_14425 0.22 -0.9 91,158 - CSW01_14425 0.33 -2.2 91,278 + CSW01_14425 0.40 -0.1 91,286 - CSW01_14425 0.40 -1.0 91,286 - CSW01_14425 0.40 -0.6 91,286 - CSW01_14425 0.40 -0.7 91,286 - CSW01_14425 0.40 -0.3 91,313 - CSW01_14425 0.41 +0.4
Or see this region's nucleotide sequence