Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14215

Experiment: ICP3_phage_411_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14210 and CSW01_14215 are separated by 408 nucleotidesCSW01_14215 and CSW01_14220 are separated by 59 nucleotides CSW01_14210: CSW01_14210 - hypothetical protein, at 39,310 to 39,870 _14210 CSW01_14215: CSW01_14215 - DUF839 domain-containing protein, at 40,279 to 42,153 _14215 CSW01_14220: CSW01_14220 - HDOD domain-containing protein, at 42,213 to 43,085 _14220 Position (kb) 40 41 42 43Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 39.307 kb on + strandat 39.315 kb on - strandat 39.315 kb on - strandat 39.315 kb on - strandat 39.315 kb on - strandat 39.315 kb on - strandat 39.447 kb on + strand, within CSW01_14210at 39.467 kb on + strand, within CSW01_14210at 39.509 kb on - strand, within CSW01_14210at 39.509 kb on - strand, within CSW01_14210at 39.509 kb on - strand, within CSW01_14210at 39.509 kb on - strand, within CSW01_14210at 39.509 kb on - strand, within CSW01_14210at 39.512 kb on + strand, within CSW01_14210at 39.530 kb on - strand, within CSW01_14210at 39.539 kb on + strand, within CSW01_14210at 39.766 kb on + strand, within CSW01_14210at 39.827 kb on + strandat 39.905 kb on + strandat 39.970 kb on - strandat 39.974 kb on - strandat 39.996 kb on + strandat 40.003 kb on + strandat 40.003 kb on + strandat 40.004 kb on - strandat 40.004 kb on - strandat 40.008 kb on + strandat 40.008 kb on + strandat 40.011 kb on - strandat 40.011 kb on - strandat 40.198 kb on + strandat 40.225 kb on + strandat 40.361 kb on + strandat 40.361 kb on + strandat 40.526 kb on - strand, within CSW01_14215at 40.665 kb on + strand, within CSW01_14215at 40.814 kb on - strand, within CSW01_14215at 40.870 kb on - strand, within CSW01_14215at 40.870 kb on - strand, within CSW01_14215at 40.918 kb on - strand, within CSW01_14215at 40.930 kb on + strand, within CSW01_14215at 40.972 kb on - strand, within CSW01_14215at 40.979 kb on - strand, within CSW01_14215at 41.035 kb on + strand, within CSW01_14215at 41.043 kb on - strand, within CSW01_14215at 41.118 kb on + strand, within CSW01_14215at 41.125 kb on - strand, within CSW01_14215at 41.177 kb on + strand, within CSW01_14215at 41.182 kb on + strand, within CSW01_14215at 41.197 kb on + strand, within CSW01_14215at 41.295 kb on + strand, within CSW01_14215at 41.353 kb on - strand, within CSW01_14215at 41.426 kb on + strand, within CSW01_14215at 41.431 kb on + strand, within CSW01_14215at 41.439 kb on - strand, within CSW01_14215at 41.439 kb on - strand, within CSW01_14215at 41.596 kb on - strand, within CSW01_14215at 41.812 kb on + strand, within CSW01_14215at 41.830 kb on - strand, within CSW01_14215at 41.844 kb on - strand, within CSW01_14215at 41.890 kb on - strand, within CSW01_14215at 41.890 kb on - strand, within CSW01_14215at 41.890 kb on - strand, within CSW01_14215at 41.926 kb on - strand, within CSW01_14215at 41.953 kb on + strand, within CSW01_14215at 41.953 kb on + strand, within CSW01_14215at 41.955 kb on - strand, within CSW01_14215at 41.969 kb on - strandat 41.969 kb on - strandat 41.972 kb on + strandat 41.972 kb on + strandat 41.972 kb on + strandat 41.995 kb on + strandat 42.010 kb on - strandat 42.108 kb on - strandat 42.130 kb on - strandat 42.234 kb on + strandat 42.297 kb on + strandat 42.369 kb on + strand, within CSW01_14220at 42.495 kb on + strand, within CSW01_14220at 42.549 kb on - strand, within CSW01_14220at 42.588 kb on + strand, within CSW01_14220at 42.592 kb on - strand, within CSW01_14220at 42.620 kb on - strand, within CSW01_14220at 42.628 kb on + strand, within CSW01_14220at 42.636 kb on - strand, within CSW01_14220at 42.670 kb on + strand, within CSW01_14220at 42.673 kb on - strand, within CSW01_14220at 42.988 kb on + strand, within CSW01_14220at 42.988 kb on + strand, within CSW01_14220at 42.988 kb on + strand, within CSW01_14220at 42.996 kb on - strand, within CSW01_14220at 42.996 kb on - strand, within CSW01_14220at 42.996 kb on - strand, within CSW01_14220at 43.005 kb on - strandat 43.018 kb on - strandat 43.059 kb on - strandat 43.068 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1
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39,307 + -1.5
39,315 - -1.8
39,315 - +0.8
39,315 - +0.5
39,315 - -0.4
39,315 - +2.4
39,447 + CSW01_14210 0.24 +0.6
39,467 + CSW01_14210 0.28 -0.7
39,509 - CSW01_14210 0.35 -0.3
39,509 - CSW01_14210 0.35 -0.4
39,509 - CSW01_14210 0.35 +2.3
39,509 - CSW01_14210 0.35 -2.5
39,509 - CSW01_14210 0.35 +1.1
39,512 + CSW01_14210 0.36 +1.7
39,530 - CSW01_14210 0.39 -2.0
39,539 + CSW01_14210 0.41 +0.5
39,766 + CSW01_14210 0.81 -2.5
39,827 + +0.1
39,905 + +0.9
39,970 - -0.4
39,974 - +1.0
39,996 + +1.0
40,003 + -1.2
40,003 + -3.1
40,004 - -2.3
40,004 - -2.5
40,008 + +1.0
40,008 + +0.5
40,011 - -2.0
40,011 - +0.3
40,198 + +0.6
40,225 + -0.3
40,361 + +0.7
40,361 + -0.4
40,526 - CSW01_14215 0.13 +1.4
40,665 + CSW01_14215 0.21 +0.4
40,814 - CSW01_14215 0.29 -0.6
40,870 - CSW01_14215 0.32 -1.0
40,870 - CSW01_14215 0.32 +1.2
40,918 - CSW01_14215 0.34 -0.6
40,930 + CSW01_14215 0.35 +1.5
40,972 - CSW01_14215 0.37 -0.0
40,979 - CSW01_14215 0.37 +0.8
41,035 + CSW01_14215 0.40 +0.4
41,043 - CSW01_14215 0.41 -0.5
41,118 + CSW01_14215 0.45 +0.8
41,125 - CSW01_14215 0.45 -2.4
41,177 + CSW01_14215 0.48 -1.0
41,182 + CSW01_14215 0.48 -2.3
41,197 + CSW01_14215 0.49 +1.8
41,295 + CSW01_14215 0.54 +1.3
41,353 - CSW01_14215 0.57 -2.1
41,426 + CSW01_14215 0.61 -0.5
41,431 + CSW01_14215 0.61 +0.7
41,439 - CSW01_14215 0.62 +1.3
41,439 - CSW01_14215 0.62 -0.3
41,596 - CSW01_14215 0.70 -1.9
41,812 + CSW01_14215 0.82 +1.2
41,830 - CSW01_14215 0.83 -0.8
41,844 - CSW01_14215 0.83 -1.7
41,890 - CSW01_14215 0.86 -1.3
41,890 - CSW01_14215 0.86 +2.2
41,890 - CSW01_14215 0.86 +1.3
41,926 - CSW01_14215 0.88 -0.4
41,953 + CSW01_14215 0.89 -1.1
41,953 + CSW01_14215 0.89 -0.8
41,955 - CSW01_14215 0.89 -2.9
41,969 - +0.4
41,969 - +1.9
41,972 + +0.7
41,972 + +1.5
41,972 + +0.3
41,995 + -2.9
42,010 - -2.8
42,108 - -2.6
42,130 - -0.8
42,234 + -0.7
42,297 + -3.2
42,369 + CSW01_14220 0.18 -0.4
42,495 + CSW01_14220 0.32 +1.3
42,549 - CSW01_14220 0.38 +0.7
42,588 + CSW01_14220 0.43 +0.8
42,592 - CSW01_14220 0.43 +0.6
42,620 - CSW01_14220 0.47 -0.2
42,628 + CSW01_14220 0.48 -1.1
42,636 - CSW01_14220 0.48 +2.0
42,670 + CSW01_14220 0.52 +1.7
42,673 - CSW01_14220 0.53 -2.6
42,988 + CSW01_14220 0.89 +0.5
42,988 + CSW01_14220 0.89 -2.6
42,988 + CSW01_14220 0.89 -2.9
42,996 - CSW01_14220 0.90 -3.3
42,996 - CSW01_14220 0.90 -1.9
42,996 - CSW01_14220 0.90 +0.8
43,005 - -0.7
43,018 - -0.3
43,059 - -2.7
43,068 + +1.8

Or see this region's nucleotide sequence