Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14135

Experiment: ICP3_phage_411_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14125 and CSW01_14130 are separated by 133 nucleotidesCSW01_14130 and CSW01_14135 are separated by 81 nucleotidesCSW01_14135 and CSW01_14140 are separated by 127 nucleotides CSW01_14125: CSW01_14125 - 1,4-alpha-glucan branching enzyme, at 17,196 to 19,385 _14125 CSW01_14130: CSW01_14130 - hypothetical protein, at 19,519 to 19,698 _14130 CSW01_14135: CSW01_14135 - type VI secretion system tube protein Hcp, at 19,780 to 20,298 _14135 CSW01_14140: CSW01_14140 - type VI secretion system tip protein VgrG, at 20,426 to 22,510 _14140 Position (kb) 19 20 21Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 18.781 kb on + strand, within CSW01_14125at 19.072 kb on + strand, within CSW01_14125at 19.098 kb on + strand, within CSW01_14125at 19.261 kb on - strandat 19.265 kb on + strandat 19.444 kb on + strandat 19.451 kb on - strandat 19.452 kb on - strandat 19.452 kb on - strandat 19.504 kb on - strandat 19.519 kb on - strandat 19.571 kb on - strand, within CSW01_14130at 19.918 kb on + strand, within CSW01_14135at 19.925 kb on - strand, within CSW01_14135at 19.925 kb on - strand, within CSW01_14135at 19.925 kb on - strand, within CSW01_14135at 19.956 kb on - strand, within CSW01_14135at 19.974 kb on - strand, within CSW01_14135at 20.004 kb on - strand, within CSW01_14135at 20.019 kb on + strand, within CSW01_14135at 20.022 kb on + strand, within CSW01_14135at 20.034 kb on + strand, within CSW01_14135at 20.034 kb on + strand, within CSW01_14135at 20.034 kb on + strand, within CSW01_14135at 20.034 kb on + strand, within CSW01_14135at 20.129 kb on - strand, within CSW01_14135at 20.531 kb on + strandat 20.592 kb on + strandat 20.623 kb on + strandat 20.631 kb on - strandat 20.631 kb on - strandat 20.667 kb on + strand, within CSW01_14140at 20.687 kb on - strand, within CSW01_14140at 20.687 kb on - strand, within CSW01_14140at 20.720 kb on - strand, within CSW01_14140at 21.076 kb on - strand, within CSW01_14140at 21.093 kb on - strand, within CSW01_14140at 21.185 kb on - strand, within CSW01_14140

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1
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18,781 + CSW01_14125 0.72 -2.3
19,072 + CSW01_14125 0.86 +1.2
19,098 + CSW01_14125 0.87 +0.9
19,261 - +0.2
19,265 + +1.2
19,444 + +0.3
19,451 - -1.6
19,452 - +0.4
19,452 - +1.0
19,504 - +1.0
19,519 - +1.2
19,571 - CSW01_14130 0.29 +0.7
19,918 + CSW01_14135 0.27 +0.6
19,925 - CSW01_14135 0.28 +0.3
19,925 - CSW01_14135 0.28 +1.0
19,925 - CSW01_14135 0.28 -0.9
19,956 - CSW01_14135 0.34 +0.7
19,974 - CSW01_14135 0.37 +1.0
20,004 - CSW01_14135 0.43 -1.2
20,019 + CSW01_14135 0.46 +0.4
20,022 + CSW01_14135 0.47 -4.1
20,034 + CSW01_14135 0.49 -1.0
20,034 + CSW01_14135 0.49 -1.5
20,034 + CSW01_14135 0.49 -1.6
20,034 + CSW01_14135 0.49 -2.9
20,129 - CSW01_14135 0.67 -0.3
20,531 + -1.2
20,592 + -0.1
20,623 + +0.8
20,631 - -1.2
20,631 - -0.5
20,667 + CSW01_14140 0.12 -3.1
20,687 - CSW01_14140 0.13 -1.8
20,687 - CSW01_14140 0.13 -3.1
20,720 - CSW01_14140 0.14 -0.2
21,076 - CSW01_14140 0.31 -3.7
21,093 - CSW01_14140 0.32 +0.8
21,185 - CSW01_14140 0.36 +0.4

Or see this region's nucleotide sequence