Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13840

Experiment: ICP3_phage_411_MOI_rep1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP3_phage_411_MOI_rep1
2,947,213	+		CSW01_13830	0.65	+1.0
2,947,213	+		CSW01_13830	0.65	-0.5
2,947,378	+		CSW01_13830	0.84	-0.9
2,947,442	+				-1.0
2,947,500	+				+0.2
2,947,526	+				+2.1
2,947,548	+				-2.9
2,947,616	+		CSW01_13835	0.12	+0.4
2,947,626	-		CSW01_13835	0.14	-0.0
2,947,632	+		CSW01_13835	0.15	-2.3
2,947,632	+		CSW01_13835	0.15	-0.2
2,947,632	+		CSW01_13835	0.15	+0.9
2,947,640	-		CSW01_13835	0.16	+0.4
2,947,640	-		CSW01_13835	0.16	-3.9
2,947,640	-		CSW01_13835	0.16	+0.6
2,947,640	-		CSW01_13835	0.16	-1.8
2,947,640	-		CSW01_13835	0.16	+0.7
2,947,640	-		CSW01_13835	0.16	+1.2
2,947,640	-		CSW01_13835	0.16	+1.9
2,947,640	-		CSW01_13835	0.16	+0.4
2,947,640	-		CSW01_13835	0.16	-2.6
2,947,642	+		CSW01_13835	0.16	+1.8
2,947,642	+		CSW01_13835	0.16	-2.7
2,947,642	+		CSW01_13835	0.16	-2.2
2,947,642	+		CSW01_13835	0.16	+1.9
2,947,650	-		CSW01_13835	0.18	-0.4
2,947,650	-		CSW01_13835	0.18	+0.0
2,947,656	-		CSW01_13835	0.19	-1.6
2,947,678	+		CSW01_13835	0.23	-0.8
2,947,682	+		CSW01_13835	0.24	+0.5
2,947,684	-		CSW01_13835	0.24	+0.6
2,947,731	+		CSW01_13835	0.32	+0.7
2,947,740	+		CSW01_13835	0.34	+0.9
2,947,740	+		CSW01_13835	0.34	+1.3
2,947,782	-		CSW01_13835	0.42	-1.1
2,947,815	-		CSW01_13835	0.48	-2.3
2,948,013	-		CSW01_13835	0.83	+0.2
2,948,015	-		CSW01_13835	0.84	-0.8
2,948,127	+				+2.9
2,948,142	+				+0.2
2,948,158	+				-1.4
2,948,267	+				+0.8
2,948,296	+				+1.2
2,948,333	+				-2.1
2,948,333	+				-1.1
2,948,333	+				-0.9
2,948,341	-				+0.2
2,948,398	-		CSW01_13840	0.11	-0.5
2,948,437	+		CSW01_13840	0.14	+0.4
2,948,437	+		CSW01_13840	0.14	-1.6
2,948,445	-		CSW01_13840	0.14	+1.0
2,948,447	-		CSW01_13840	0.14	-2.6
2,948,454	+		CSW01_13840	0.15	-0.2
2,948,475	+		CSW01_13840	0.16	+1.6
2,948,495	+		CSW01_13840	0.17	+2.2
2,948,495	+		CSW01_13840	0.17	-1.1
2,948,539	+		CSW01_13840	0.19	+0.8
2,948,549	-		CSW01_13840	0.20	+1.4
2,948,584	-		CSW01_13840	0.22	+0.8
2,948,600	+		CSW01_13840	0.23	+0.5
2,948,603	-		CSW01_13840	0.23	+0.7
2,948,611	-		CSW01_13840	0.23	+0.8
2,948,695	+		CSW01_13840	0.28	+1.1
2,948,695	+		CSW01_13840	0.28	+2.3
2,948,735	+		CSW01_13840	0.30	-3.1
2,948,735	+		CSW01_13840	0.30	-2.6
2,948,735	+		CSW01_13840	0.30	-3.3
2,948,735	+		CSW01_13840	0.30	-2.1
2,948,735	+		CSW01_13840	0.30	-0.6
2,948,743	-		CSW01_13840	0.30	-1.1
2,948,743	-		CSW01_13840	0.30	-0.6
2,948,743	-		CSW01_13840	0.30	+1.1
2,948,743	-		CSW01_13840	0.30	+1.5
2,948,858	+		CSW01_13840	0.37	+0.8
2,948,868	+		CSW01_13840	0.37	+2.1
2,948,869	+		CSW01_13840	0.37	+1.0
2,948,934	-		CSW01_13840	0.41	-0.5
2,948,973	+		CSW01_13840	0.43	+1.3
2,948,973	+		CSW01_13840	0.43	+0.2
2,948,973	+		CSW01_13840	0.43	-0.2
2,948,973	+		CSW01_13840	0.43	-0.2
2,948,973	+		CSW01_13840	0.43	+2.1
2,948,973	+		CSW01_13840	0.43	+0.8
2,948,973	+		CSW01_13840	0.43	-0.3
2,948,973	+		CSW01_13840	0.43	-2.7
2,948,973	+		CSW01_13840	0.43	-3.8
2,948,973	+		CSW01_13840	0.43	-0.7
2,948,973	+		CSW01_13840	0.43	+0.6
2,948,973	+		CSW01_13840	0.43	+0.5
2,948,981	-		CSW01_13840	0.43	-1.8
2,948,981	-		CSW01_13840	0.43	+0.6
2,948,981	-		CSW01_13840	0.43	-0.1
2,948,981	-		CSW01_13840	0.43	+1.3
2,948,981	-		CSW01_13840	0.43	+1.0
2,948,981	-		CSW01_13840	0.43	-0.1
2,948,981	-		CSW01_13840	0.43	-2.6
2,948,981	-		CSW01_13840	0.43	-0.5
2,948,981	-		CSW01_13840	0.43	+0.4
2,948,981	-		CSW01_13840	0.43	+0.2
2,948,981	-		CSW01_13840	0.43	+0.0
2,948,981	-		CSW01_13840	0.43	-2.8
2,948,988	-		CSW01_13840	0.44	-0.2
2,948,991	-		CSW01_13840	0.44	-0.6
2,949,096	+		CSW01_13840	0.50	+0.4
2,949,174	-		CSW01_13840	0.54	+0.0
2,949,174	-		CSW01_13840	0.54	+1.1
2,949,174	-		CSW01_13840	0.54	+1.1
2,949,195	-		CSW01_13840	0.55	+0.3
2,949,202	+		CSW01_13840	0.55	+0.9
2,949,210	-		CSW01_13840	0.56	+0.7
2,949,228	+		CSW01_13840	0.57	+0.1
2,949,228	+		CSW01_13840	0.57	+0.5
2,949,228	+		CSW01_13840	0.57	+1.3
2,949,228	+		CSW01_13840	0.57	+0.4
2,949,236	-		CSW01_13840	0.57	+0.8
2,949,236	-		CSW01_13840	0.57	+1.9
2,949,236	-		CSW01_13840	0.57	-1.9
2,949,236	-		CSW01_13840	0.57	-0.5
2,949,236	-		CSW01_13840	0.57	+0.8
2,949,236	-		CSW01_13840	0.57	+1.5
2,949,238	+		CSW01_13840	0.57	-0.8
2,949,238	+		CSW01_13840	0.57	-1.1
2,949,238	+		CSW01_13840	0.57	+0.5
2,949,238	+		CSW01_13840	0.57	+2.3
2,949,238	+		CSW01_13840	0.57	+0.4
2,949,238	+		CSW01_13840	0.57	+0.8
2,949,238	+		CSW01_13840	0.57	-3.3
2,949,241	-		CSW01_13840	0.58	-1.5
2,949,241	-		CSW01_13840	0.58	+0.1
2,949,246	-		CSW01_13840	0.58	+0.8
2,949,246	-		CSW01_13840	0.58	+0.6
2,949,246	-		CSW01_13840	0.58	-1.9
2,949,351	-		CSW01_13840	0.64	-0.3
2,949,440	+		CSW01_13840	0.68	+0.1
2,949,486	+		CSW01_13840	0.71	+0.1
2,949,494	-		CSW01_13840	0.71	-0.8
2,949,499	+		CSW01_13840	0.72	+0.0
2,949,507	-		CSW01_13840	0.72	+2.1
2,949,512	+		CSW01_13840	0.72	+0.1
2,949,590	-		CSW01_13840	0.77	-3.2
2,949,592	+		CSW01_13840	0.77	-2.4
2,949,600	-		CSW01_13840	0.77	-3.1
2,949,639	+		CSW01_13840	0.79	-2.6
2,949,639	+		CSW01_13840	0.79	-2.2
2,949,647	-		CSW01_13840	0.80	-0.0
2,949,647	-		CSW01_13840	0.80	+0.8
2,949,647	-		CSW01_13840	0.80	+1.8
2,949,720	+		CSW01_13840	0.84	+0.5
2,949,720	+		CSW01_13840	0.84	-2.4
2,949,728	-		CSW01_13840	0.84	-2.8
2,949,728	-		CSW01_13840	0.84	-2.1
2,949,733	-		CSW01_13840	0.84	-3.4
2,949,766	+		CSW01_13840	0.86	+1.4
2,949,774	+		CSW01_13840	0.87	+0.6
2,949,774	+		CSW01_13840	0.87	+0.6
2,949,774	+		CSW01_13840	0.87	-1.7
2,949,774	+		CSW01_13840	0.87	+1.1
2,949,774	+		CSW01_13840	0.87	+0.1
2,949,774	+		CSW01_13840	0.87	-1.2
2,949,774	+		CSW01_13840	0.87	-2.4
2,949,774	+		CSW01_13840	0.87	+0.2
2,949,774	+		CSW01_13840	0.87	+1.0
2,949,782	-		CSW01_13840	0.87	+1.8
2,949,782	-		CSW01_13840	0.87	-3.7
2,949,782	-		CSW01_13840	0.87	-1.5
2,949,782	-		CSW01_13840	0.87	-1.1
2,949,782	-		CSW01_13840	0.87	-1.8
2,949,791	+		CSW01_13840	0.88	-0.7
2,949,794	-		CSW01_13840	0.88	+1.6
2,949,886	+				+0.8
2,949,906	+				+0.8
2,949,906	+				-0.7
2,949,906	+				-2.9
2,949,906	+				+0.0
2,949,914	-				-0.9
2,949,914	-				+1.1
2,949,914	-				+1.6
2,950,052	+				+0.3
2,950,052	+				-1.3
2,950,052	+				+1.3
2,950,060	-				-4.3
2,950,060	-				+0.4
2,950,060	-				+1.2
2,950,183	-		CSW01_13845	0.45	-0.4
2,950,186	+		CSW01_13845	0.46	+0.7
2,950,270	+		CSW01_13845	0.72	-2.6
2,950,270	+		CSW01_13845	0.72	-4.0
2,950,273	-		CSW01_13845	0.73	+1.1
2,950,293	-		CSW01_13845	0.79	-2.1
2,950,374	-				+0.2
2,950,418	+				+0.8
2,950,428	+				+1.3
2,950,428	+				-3.2
2,950,436	-				+2.4
2,950,436	-				-1.4
2,950,765	-		CSW01_13850	0.18	+2.2