Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_09855

Experiment: ICP3_phage_411_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_09845 and CSW01_09850 are separated by 87 nucleotidesCSW01_09850 and CSW01_09855 are separated by 24 nucleotidesCSW01_09855 and CSW01_09860 overlap by 11 nucleotides CSW01_09845: CSW01_09845 - o-succinylbenzoate synthase, at 2,122,026 to 2,123,024 _09845 CSW01_09850: CSW01_09850 - 1,4-dihydroxy-2-naphthoyl-CoA synthase, at 2,123,112 to 2,123,978 _09850 CSW01_09855: CSW01_09855 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 2,124,003 to 2,124,794 _09855 CSW01_09860: CSW01_09860 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase, at 2,124,784 to 2,126,496 _09860 Position (kb) 2124 2125Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2123.293 kb on + strand, within CSW01_09850at 2123.309 kb on + strand, within CSW01_09850at 2123.320 kb on - strand, within CSW01_09850at 2123.370 kb on - strand, within CSW01_09850at 2123.379 kb on + strand, within CSW01_09850at 2123.387 kb on - strand, within CSW01_09850at 2123.387 kb on - strand, within CSW01_09850at 2123.387 kb on - strand, within CSW01_09850at 2123.387 kb on - strand, within CSW01_09850at 2123.387 kb on - strand, within CSW01_09850at 2123.561 kb on + strand, within CSW01_09850at 2123.564 kb on - strand, within CSW01_09850at 2123.569 kb on - strand, within CSW01_09850at 2123.617 kb on - strand, within CSW01_09850at 2123.744 kb on - strand, within CSW01_09850at 2123.750 kb on + strand, within CSW01_09850at 2123.758 kb on - strand, within CSW01_09850at 2123.792 kb on + strand, within CSW01_09850at 2123.831 kb on - strand, within CSW01_09850at 2123.848 kb on - strand, within CSW01_09850at 2123.976 kb on - strandat 2123.995 kb on - strandat 2124.125 kb on - strand, within CSW01_09855at 2124.149 kb on - strand, within CSW01_09855at 2124.149 kb on - strand, within CSW01_09855at 2124.159 kb on - strand, within CSW01_09855at 2124.173 kb on + strand, within CSW01_09855at 2124.173 kb on + strand, within CSW01_09855at 2124.181 kb on - strand, within CSW01_09855at 2124.181 kb on - strand, within CSW01_09855at 2124.309 kb on + strand, within CSW01_09855at 2124.309 kb on + strand, within CSW01_09855at 2124.362 kb on + strand, within CSW01_09855at 2124.381 kb on + strand, within CSW01_09855at 2124.383 kb on + strand, within CSW01_09855at 2124.450 kb on - strand, within CSW01_09855at 2124.488 kb on + strand, within CSW01_09855at 2124.488 kb on + strand, within CSW01_09855at 2124.488 kb on + strand, within CSW01_09855at 2124.548 kb on + strand, within CSW01_09855at 2124.566 kb on + strand, within CSW01_09855at 2124.651 kb on - strand, within CSW01_09855at 2124.675 kb on - strand, within CSW01_09855at 2124.749 kb on - strandat 2124.749 kb on - strandat 2124.749 kb on - strandat 2124.770 kb on - strandat 2124.774 kb on + strandat 2124.791 kb on + strandat 2124.791 kb on - strandat 2124.820 kb on - strandat 2124.875 kb on - strandat 2124.901 kb on + strandat 2124.912 kb on + strandat 2124.912 kb on + strandat 2124.912 kb on + strandat 2124.912 kb on + strandat 2124.912 kb on + strandat 2124.912 kb on + strandat 2124.920 kb on - strandat 2124.920 kb on - strandat 2124.920 kb on - strandat 2124.920 kb on - strandat 2124.920 kb on - strandat 2124.920 kb on - strandat 2124.920 kb on - strandat 2124.920 kb on - strandat 2124.920 kb on - strandat 2124.998 kb on + strand, within CSW01_09860at 2125.057 kb on + strand, within CSW01_09860at 2125.085 kb on + strand, within CSW01_09860at 2125.093 kb on - strand, within CSW01_09860at 2125.179 kb on - strand, within CSW01_09860at 2125.255 kb on + strand, within CSW01_09860at 2125.263 kb on - strand, within CSW01_09860at 2125.275 kb on + strand, within CSW01_09860at 2125.285 kb on - strand, within CSW01_09860at 2125.297 kb on - strand, within CSW01_09860at 2125.340 kb on - strand, within CSW01_09860at 2125.353 kb on + strand, within CSW01_09860at 2125.353 kb on + strand, within CSW01_09860at 2125.429 kb on - strand, within CSW01_09860at 2125.442 kb on - strand, within CSW01_09860at 2125.478 kb on - strand, within CSW01_09860at 2125.495 kb on + strand, within CSW01_09860at 2125.523 kb on + strand, within CSW01_09860at 2125.523 kb on + strand, within CSW01_09860at 2125.523 kb on + strand, within CSW01_09860at 2125.525 kb on - strand, within CSW01_09860at 2125.531 kb on - strand, within CSW01_09860at 2125.531 kb on - strand, within CSW01_09860at 2125.531 kb on - strand, within CSW01_09860at 2125.548 kb on - strand, within CSW01_09860at 2125.558 kb on - strand, within CSW01_09860at 2125.558 kb on - strand, within CSW01_09860at 2125.587 kb on + strand, within CSW01_09860at 2125.652 kb on + strand, within CSW01_09860at 2125.740 kb on + strand, within CSW01_09860

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1
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2,123,293 + CSW01_09850 0.21 +1.0
2,123,309 + CSW01_09850 0.23 +0.6
2,123,320 - CSW01_09850 0.24 +0.0
2,123,370 - CSW01_09850 0.30 +1.8
2,123,379 + CSW01_09850 0.31 -1.9
2,123,387 - CSW01_09850 0.32 -0.0
2,123,387 - CSW01_09850 0.32 +0.1
2,123,387 - CSW01_09850 0.32 +0.0
2,123,387 - CSW01_09850 0.32 -0.1
2,123,387 - CSW01_09850 0.32 -2.9
2,123,561 + CSW01_09850 0.52 -1.6
2,123,564 - CSW01_09850 0.52 -0.3
2,123,569 - CSW01_09850 0.53 +0.8
2,123,617 - CSW01_09850 0.58 +1.5
2,123,744 - CSW01_09850 0.73 +0.1
2,123,750 + CSW01_09850 0.74 -1.3
2,123,758 - CSW01_09850 0.75 -4.2
2,123,792 + CSW01_09850 0.78 -1.4
2,123,831 - CSW01_09850 0.83 -2.1
2,123,848 - CSW01_09850 0.85 +0.7
2,123,976 - -0.9
2,123,995 - -0.2
2,124,125 - CSW01_09855 0.15 +0.3
2,124,149 - CSW01_09855 0.18 -1.4
2,124,149 - CSW01_09855 0.18 +0.7
2,124,159 - CSW01_09855 0.20 +1.0
2,124,173 + CSW01_09855 0.21 +0.6
2,124,173 + CSW01_09855 0.21 -0.2
2,124,181 - CSW01_09855 0.22 +1.4
2,124,181 - CSW01_09855 0.22 +1.5
2,124,309 + CSW01_09855 0.39 +1.9
2,124,309 + CSW01_09855 0.39 +1.1
2,124,362 + CSW01_09855 0.45 +0.6
2,124,381 + CSW01_09855 0.48 -2.2
2,124,383 + CSW01_09855 0.48 +0.8
2,124,450 - CSW01_09855 0.56 +0.9
2,124,488 + CSW01_09855 0.61 +0.1
2,124,488 + CSW01_09855 0.61 +0.1
2,124,488 + CSW01_09855 0.61 +1.0
2,124,548 + CSW01_09855 0.69 -2.1
2,124,566 + CSW01_09855 0.71 -3.2
2,124,651 - CSW01_09855 0.82 -1.5
2,124,675 - CSW01_09855 0.85 -2.9
2,124,749 - +0.2
2,124,749 - -0.0
2,124,749 - +0.7
2,124,770 - +1.8
2,124,774 + -1.4
2,124,791 + +0.1
2,124,791 - +1.4
2,124,820 - -2.3
2,124,875 - +1.1
2,124,901 + -2.1
2,124,912 + +0.1
2,124,912 + +1.0
2,124,912 + -2.8
2,124,912 + +1.9
2,124,912 + -0.9
2,124,912 + -1.6
2,124,920 - +0.5
2,124,920 - -1.3
2,124,920 - +1.2
2,124,920 - +0.5
2,124,920 - -1.6
2,124,920 - +0.5
2,124,920 - -0.5
2,124,920 - -2.3
2,124,920 - +1.4
2,124,998 + CSW01_09860 0.12 +2.2
2,125,057 + CSW01_09860 0.16 +0.2
2,125,085 + CSW01_09860 0.18 +1.7
2,125,093 - CSW01_09860 0.18 -2.3
2,125,179 - CSW01_09860 0.23 +0.8
2,125,255 + CSW01_09860 0.27 +2.1
2,125,263 - CSW01_09860 0.28 +0.4
2,125,275 + CSW01_09860 0.29 -2.1
2,125,285 - CSW01_09860 0.29 -1.3
2,125,297 - CSW01_09860 0.30 +0.7
2,125,340 - CSW01_09860 0.32 -0.4
2,125,353 + CSW01_09860 0.33 +1.0
2,125,353 + CSW01_09860 0.33 -0.9
2,125,429 - CSW01_09860 0.38 +1.6
2,125,442 - CSW01_09860 0.38 +0.7
2,125,478 - CSW01_09860 0.41 -0.3
2,125,495 + CSW01_09860 0.42 -0.3
2,125,523 + CSW01_09860 0.43 -3.0
2,125,523 + CSW01_09860 0.43 -1.3
2,125,523 + CSW01_09860 0.43 -0.7
2,125,525 - CSW01_09860 0.43 -0.2
2,125,531 - CSW01_09860 0.44 -0.1
2,125,531 - CSW01_09860 0.44 +1.8
2,125,531 - CSW01_09860 0.44 +0.1
2,125,548 - CSW01_09860 0.45 -1.0
2,125,558 - CSW01_09860 0.45 -0.8
2,125,558 - CSW01_09860 0.45 +0.5
2,125,587 + CSW01_09860 0.47 +0.2
2,125,652 + CSW01_09860 0.51 -1.9
2,125,740 + CSW01_09860 0.56 +0.7

Or see this region's nucleotide sequence