Experiment: ICP3_phage_411_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_09845 and CSW01_09850 are separated by 87 nucleotides CSW01_09850 and CSW01_09855 are separated by 24 nucleotides CSW01_09855 and CSW01_09860 overlap by 11 nucleotides
CSW01_09845: CSW01_09845 - o-succinylbenzoate synthase, at 2,122,026 to 2,123,024
_09845
CSW01_09850: CSW01_09850 - 1,4-dihydroxy-2-naphthoyl-CoA synthase, at 2,123,112 to 2,123,978
_09850
CSW01_09855: CSW01_09855 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 2,124,003 to 2,124,794
_09855
CSW01_09860: CSW01_09860 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase, at 2,124,784 to 2,126,496
_09860
Position (kb)
2124
2125 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2123.293 kb on + strand, within CSW01_09850 at 2123.309 kb on + strand, within CSW01_09850 at 2123.320 kb on - strand, within CSW01_09850 at 2123.370 kb on - strand, within CSW01_09850 at 2123.379 kb on + strand, within CSW01_09850 at 2123.387 kb on - strand, within CSW01_09850 at 2123.387 kb on - strand, within CSW01_09850 at 2123.387 kb on - strand, within CSW01_09850 at 2123.387 kb on - strand, within CSW01_09850 at 2123.387 kb on - strand, within CSW01_09850 at 2123.561 kb on + strand, within CSW01_09850 at 2123.564 kb on - strand, within CSW01_09850 at 2123.569 kb on - strand, within CSW01_09850 at 2123.617 kb on - strand, within CSW01_09850 at 2123.744 kb on - strand, within CSW01_09850 at 2123.750 kb on + strand, within CSW01_09850 at 2123.758 kb on - strand, within CSW01_09850 at 2123.792 kb on + strand, within CSW01_09850 at 2123.831 kb on - strand, within CSW01_09850 at 2123.848 kb on - strand, within CSW01_09850 at 2123.976 kb on - strand at 2123.995 kb on - strand at 2124.125 kb on - strand, within CSW01_09855 at 2124.149 kb on - strand, within CSW01_09855 at 2124.149 kb on - strand, within CSW01_09855 at 2124.159 kb on - strand, within CSW01_09855 at 2124.173 kb on + strand, within CSW01_09855 at 2124.173 kb on + strand, within CSW01_09855 at 2124.181 kb on - strand, within CSW01_09855 at 2124.181 kb on - strand, within CSW01_09855 at 2124.309 kb on + strand, within CSW01_09855 at 2124.309 kb on + strand, within CSW01_09855 at 2124.362 kb on + strand, within CSW01_09855 at 2124.381 kb on + strand, within CSW01_09855 at 2124.383 kb on + strand, within CSW01_09855 at 2124.450 kb on - strand, within CSW01_09855 at 2124.488 kb on + strand, within CSW01_09855 at 2124.488 kb on + strand, within CSW01_09855 at 2124.488 kb on + strand, within CSW01_09855 at 2124.548 kb on + strand, within CSW01_09855 at 2124.566 kb on + strand, within CSW01_09855 at 2124.651 kb on - strand, within CSW01_09855 at 2124.675 kb on - strand, within CSW01_09855 at 2124.749 kb on - strand at 2124.749 kb on - strand at 2124.749 kb on - strand at 2124.770 kb on - strand at 2124.774 kb on + strand at 2124.791 kb on + strand at 2124.791 kb on - strand at 2124.820 kb on - strand at 2124.875 kb on - strand at 2124.901 kb on + strand at 2124.912 kb on + strand at 2124.912 kb on + strand at 2124.912 kb on + strand at 2124.912 kb on + strand at 2124.912 kb on + strand at 2124.912 kb on + strand at 2124.920 kb on - strand at 2124.920 kb on - strand at 2124.920 kb on - strand at 2124.920 kb on - strand at 2124.920 kb on - strand at 2124.920 kb on - strand at 2124.920 kb on - strand at 2124.920 kb on - strand at 2124.920 kb on - strand at 2124.998 kb on + strand, within CSW01_09860 at 2125.057 kb on + strand, within CSW01_09860 at 2125.085 kb on + strand, within CSW01_09860 at 2125.093 kb on - strand, within CSW01_09860 at 2125.179 kb on - strand, within CSW01_09860 at 2125.255 kb on + strand, within CSW01_09860 at 2125.263 kb on - strand, within CSW01_09860 at 2125.275 kb on + strand, within CSW01_09860 at 2125.285 kb on - strand, within CSW01_09860 at 2125.297 kb on - strand, within CSW01_09860 at 2125.340 kb on - strand, within CSW01_09860 at 2125.353 kb on + strand, within CSW01_09860 at 2125.353 kb on + strand, within CSW01_09860 at 2125.429 kb on - strand, within CSW01_09860 at 2125.442 kb on - strand, within CSW01_09860 at 2125.478 kb on - strand, within CSW01_09860 at 2125.495 kb on + strand, within CSW01_09860 at 2125.523 kb on + strand, within CSW01_09860 at 2125.523 kb on + strand, within CSW01_09860 at 2125.523 kb on + strand, within CSW01_09860 at 2125.525 kb on - strand, within CSW01_09860 at 2125.531 kb on - strand, within CSW01_09860 at 2125.531 kb on - strand, within CSW01_09860 at 2125.531 kb on - strand, within CSW01_09860 at 2125.548 kb on - strand, within CSW01_09860 at 2125.558 kb on - strand, within CSW01_09860 at 2125.558 kb on - strand, within CSW01_09860 at 2125.587 kb on + strand, within CSW01_09860 at 2125.652 kb on + strand, within CSW01_09860 at 2125.740 kb on + strand, within CSW01_09860
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1 remove 2,123,293 + CSW01_09850 0.21 +1.0 2,123,309 + CSW01_09850 0.23 +0.6 2,123,320 - CSW01_09850 0.24 +0.0 2,123,370 - CSW01_09850 0.30 +1.8 2,123,379 + CSW01_09850 0.31 -1.9 2,123,387 - CSW01_09850 0.32 -0.0 2,123,387 - CSW01_09850 0.32 +0.1 2,123,387 - CSW01_09850 0.32 +0.0 2,123,387 - CSW01_09850 0.32 -0.1 2,123,387 - CSW01_09850 0.32 -2.9 2,123,561 + CSW01_09850 0.52 -1.6 2,123,564 - CSW01_09850 0.52 -0.3 2,123,569 - CSW01_09850 0.53 +0.8 2,123,617 - CSW01_09850 0.58 +1.5 2,123,744 - CSW01_09850 0.73 +0.1 2,123,750 + CSW01_09850 0.74 -1.3 2,123,758 - CSW01_09850 0.75 -4.2 2,123,792 + CSW01_09850 0.78 -1.4 2,123,831 - CSW01_09850 0.83 -2.1 2,123,848 - CSW01_09850 0.85 +0.7 2,123,976 - -0.9 2,123,995 - -0.2 2,124,125 - CSW01_09855 0.15 +0.3 2,124,149 - CSW01_09855 0.18 -1.4 2,124,149 - CSW01_09855 0.18 +0.7 2,124,159 - CSW01_09855 0.20 +1.0 2,124,173 + CSW01_09855 0.21 +0.6 2,124,173 + CSW01_09855 0.21 -0.2 2,124,181 - CSW01_09855 0.22 +1.4 2,124,181 - CSW01_09855 0.22 +1.5 2,124,309 + CSW01_09855 0.39 +1.9 2,124,309 + CSW01_09855 0.39 +1.1 2,124,362 + CSW01_09855 0.45 +0.6 2,124,381 + CSW01_09855 0.48 -2.2 2,124,383 + CSW01_09855 0.48 +0.8 2,124,450 - CSW01_09855 0.56 +0.9 2,124,488 + CSW01_09855 0.61 +0.1 2,124,488 + CSW01_09855 0.61 +0.1 2,124,488 + CSW01_09855 0.61 +1.0 2,124,548 + CSW01_09855 0.69 -2.1 2,124,566 + CSW01_09855 0.71 -3.2 2,124,651 - CSW01_09855 0.82 -1.5 2,124,675 - CSW01_09855 0.85 -2.9 2,124,749 - +0.2 2,124,749 - -0.0 2,124,749 - +0.7 2,124,770 - +1.8 2,124,774 + -1.4 2,124,791 + +0.1 2,124,791 - +1.4 2,124,820 - -2.3 2,124,875 - +1.1 2,124,901 + -2.1 2,124,912 + +0.1 2,124,912 + +1.0 2,124,912 + -2.8 2,124,912 + +1.9 2,124,912 + -0.9 2,124,912 + -1.6 2,124,920 - +0.5 2,124,920 - -1.3 2,124,920 - +1.2 2,124,920 - +0.5 2,124,920 - -1.6 2,124,920 - +0.5 2,124,920 - -0.5 2,124,920 - -2.3 2,124,920 - +1.4 2,124,998 + CSW01_09860 0.12 +2.2 2,125,057 + CSW01_09860 0.16 +0.2 2,125,085 + CSW01_09860 0.18 +1.7 2,125,093 - CSW01_09860 0.18 -2.3 2,125,179 - CSW01_09860 0.23 +0.8 2,125,255 + CSW01_09860 0.27 +2.1 2,125,263 - CSW01_09860 0.28 +0.4 2,125,275 + CSW01_09860 0.29 -2.1 2,125,285 - CSW01_09860 0.29 -1.3 2,125,297 - CSW01_09860 0.30 +0.7 2,125,340 - CSW01_09860 0.32 -0.4 2,125,353 + CSW01_09860 0.33 +1.0 2,125,353 + CSW01_09860 0.33 -0.9 2,125,429 - CSW01_09860 0.38 +1.6 2,125,442 - CSW01_09860 0.38 +0.7 2,125,478 - CSW01_09860 0.41 -0.3 2,125,495 + CSW01_09860 0.42 -0.3 2,125,523 + CSW01_09860 0.43 -3.0 2,125,523 + CSW01_09860 0.43 -1.3 2,125,523 + CSW01_09860 0.43 -0.7 2,125,525 - CSW01_09860 0.43 -0.2 2,125,531 - CSW01_09860 0.44 -0.1 2,125,531 - CSW01_09860 0.44 +1.8 2,125,531 - CSW01_09860 0.44 +0.1 2,125,548 - CSW01_09860 0.45 -1.0 2,125,558 - CSW01_09860 0.45 -0.8 2,125,558 - CSW01_09860 0.45 +0.5 2,125,587 + CSW01_09860 0.47 +0.2 2,125,652 + CSW01_09860 0.51 -1.9 2,125,740 + CSW01_09860 0.56 +0.7
Or see this region's nucleotide sequence