Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_06715

Experiment: ICP3_phage_411_MOI_rep1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP3_phage_411_MOI_rep1
1,412,907	-				+1.1
1,412,919	-				-2.1
1,412,944	+				+0.2
1,412,944	+				+0.9
1,412,952	-				-2.7
1,412,980	+				-0.6
1,412,980	+				-2.0
1,412,982	+				+0.9
1,412,982	+				+1.4
1,412,982	+				-0.3
1,412,990	-		CSW01_06710	0.11	+0.2
1,412,990	-		CSW01_06710	0.11	+0.6
1,412,994	+		CSW01_06710	0.11	+0.4
1,412,994	+		CSW01_06710	0.11	-2.6
1,413,002	-		CSW01_06710	0.12	-1.2
1,413,002	-		CSW01_06710	0.12	-2.4
1,413,015	+		CSW01_06710	0.14	+0.1
1,413,015	+		CSW01_06710	0.14	-1.6
1,413,015	+		CSW01_06710	0.14	-1.5
1,413,015	+		CSW01_06710	0.14	-0.9
1,413,023	-		CSW01_06710	0.14	-0.8
1,413,023	-		CSW01_06710	0.14	-1.4
1,413,023	-		CSW01_06710	0.14	+0.1
1,413,023	-		CSW01_06710	0.14	-0.7
1,413,023	-		CSW01_06710	0.14	-1.6
1,413,104	-		CSW01_06710	0.24	-0.3
1,413,153	-		CSW01_06710	0.30	-4.0
1,413,162	+		CSW01_06710	0.31	-1.6
1,413,162	+		CSW01_06710	0.31	-1.2
1,413,162	+		CSW01_06710	0.31	-0.3
1,413,170	-		CSW01_06710	0.32	-3.1
1,413,172	+		CSW01_06710	0.32	-1.0
1,413,172	+		CSW01_06710	0.32	+0.0
1,413,172	+		CSW01_06710	0.32	-0.4
1,413,172	+		CSW01_06710	0.32	-1.9
1,413,172	+		CSW01_06710	0.32	+3.9
1,413,172	+		CSW01_06710	0.32	-2.0
1,413,179	-		CSW01_06710	0.33	-1.8
1,413,180	-		CSW01_06710	0.33	-0.9
1,413,180	-		CSW01_06710	0.33	-0.4
1,413,185	+		CSW01_06710	0.34	+0.8
1,413,193	-		CSW01_06710	0.35	-0.1
1,413,200	-		CSW01_06710	0.36	-2.1
1,413,230	+		CSW01_06710	0.39	+0.2
1,413,238	-		CSW01_06710	0.40	+0.1
1,413,244	-		CSW01_06710	0.41	+1.8
1,413,244	-		CSW01_06710	0.41	+0.6
1,413,244	-		CSW01_06710	0.41	-0.3
1,413,244	-		CSW01_06710	0.41	-0.6
1,413,244	-		CSW01_06710	0.41	+1.1
1,413,244	-		CSW01_06710	0.41	+0.7
1,413,249	-		CSW01_06710	0.42	+0.6
1,413,331	+		CSW01_06710	0.52	-0.5
1,413,339	-		CSW01_06710	0.53	-0.2
1,413,339	-		CSW01_06710	0.53	+2.0
1,413,349	-		CSW01_06710	0.54	+1.5
1,413,393	+		CSW01_06710	0.59	-0.1
1,413,396	-		CSW01_06710	0.60	+1.4
1,413,401	-		CSW01_06710	0.60	-0.0
1,413,401	-		CSW01_06710	0.60	-2.0
1,413,406	+		CSW01_06710	0.61	-2.8
1,413,406	+		CSW01_06710	0.61	-0.3
1,413,486	+		CSW01_06710	0.70	+0.6
1,413,486	+		CSW01_06710	0.70	-0.1
1,413,494	-		CSW01_06710	0.71	-0.1
1,413,494	-		CSW01_06710	0.71	-0.3
1,413,518	+		CSW01_06710	0.74	-0.5
1,413,553	+		CSW01_06710	0.79	-1.8
1,413,572	+		CSW01_06710	0.81	-2.2
1,413,586	-		CSW01_06710	0.82	+1.2
1,413,597	-		CSW01_06710	0.84	-0.9
1,413,634	+		CSW01_06710	0.88	+0.1
1,413,634	+		CSW01_06710	0.88	-0.9
1,413,691	-				-1.5
1,413,693	-				-3.6
1,413,804	+				+0.5
1,413,807	-				+0.8
1,413,874	+				-2.6
1,413,874	+				-0.7
1,413,874	+				-1.3
1,413,874	+				+0.2
1,413,882	-				+0.5
1,413,882	-				+0.2
1,413,932	+				-0.3
1,413,942	+				+1.8
1,413,950	-				-2.2
1,413,950	-				-2.6
1,413,977	+				+0.5
1,413,985	-				+1.1
1,414,041	-		CSW01_06715	0.10	-0.6
1,414,077	-		CSW01_06715	0.13	+0.4
1,414,084	+		CSW01_06715	0.13	-0.4
1,414,084	+		CSW01_06715	0.13	-1.1
1,414,172	-		CSW01_06715	0.19	-0.2
1,414,172	-		CSW01_06715	0.19	-1.9
1,414,219	+		CSW01_06715	0.22	+0.1
1,414,225	-		CSW01_06715	0.22	-1.4
1,414,227	-		CSW01_06715	0.23	+3.2
1,414,227	-		CSW01_06715	0.23	+0.1
1,414,287	+		CSW01_06715	0.27	-1.9
1,414,313	+		CSW01_06715	0.28	+1.2
1,414,396	+		CSW01_06715	0.34	+0.9
1,414,404	-		CSW01_06715	0.34	+0.3
1,414,405	-		CSW01_06715	0.34	+0.9
1,414,504	-		CSW01_06715	0.41	+0.4
1,414,609	-		CSW01_06715	0.48	+3.4
1,414,609	-		CSW01_06715	0.48	-1.4
1,414,624	+		CSW01_06715	0.49	+0.1
1,414,624	+		CSW01_06715	0.49	-0.1
1,414,624	+		CSW01_06715	0.49	+0.6
1,414,624	+		CSW01_06715	0.49	-1.1
1,414,645	-		CSW01_06715	0.50	+1.3
1,414,768	+		CSW01_06715	0.58	+1.5
1,414,776	-		CSW01_06715	0.58	+0.1
1,414,793	-		CSW01_06715	0.60	+0.9
1,414,825	+		CSW01_06715	0.62	-1.1
1,414,833	-		CSW01_06715	0.62	-0.5
1,414,879	+		CSW01_06715	0.65	-0.2
1,414,879	+		CSW01_06715	0.65	+0.6
1,414,879	+		CSW01_06715	0.65	+1.0
1,414,887	-		CSW01_06715	0.66	+2.3
1,414,887	-		CSW01_06715	0.66	+1.8
1,414,887	-		CSW01_06715	0.66	+0.7
1,414,887	-		CSW01_06715	0.66	-1.7
1,414,887	-		CSW01_06715	0.66	+0.6
1,414,887	-		CSW01_06715	0.66	-0.6
1,414,887	-		CSW01_06715	0.66	+0.4
1,414,987	+		CSW01_06715	0.72	+1.3
1,414,987	-		CSW01_06715	0.72	-1.7
1,415,084	+		CSW01_06715	0.79	-0.1
1,415,099	-		CSW01_06715	0.80	-2.8
1,415,146	-		CSW01_06715	0.83	-1.1
1,415,236	+		CSW01_06715	0.89	+1.0
1,415,244	-		CSW01_06715	0.89	-0.6
1,415,244	-		CSW01_06715	0.89	-0.2
1,415,273	+				+2.0
1,415,326	-				-0.4
1,415,605	+		CSW01_06720	0.34	-1.1
1,415,605	+		CSW01_06720	0.34	+0.1
1,415,605	+		CSW01_06720	0.34	+0.5
1,415,605	+		CSW01_06720	0.34	+0.1
1,415,605	+		CSW01_06720	0.34	+1.1
1,415,605	+		CSW01_06720	0.34	+1.6
1,415,613	-		CSW01_06720	0.35	+1.1
1,415,613	-		CSW01_06720	0.35	-2.2
1,415,613	-		CSW01_06720	0.35	+1.5
1,415,613	-		CSW01_06720	0.35	+0.0
1,415,618	-		CSW01_06720	0.36	+0.8
1,415,650	-		CSW01_06720	0.42	-2.5
1,415,746	-		CSW01_06720	0.59	-3.0
1,415,756	+		CSW01_06720	0.61	+0.3
1,415,843	+		CSW01_06720	0.77	-0.6
1,415,916	-				+1.1
1,415,952	+				-2.0
1,416,028	+				-0.6
1,416,028	+				+0.9
1,416,028	+				-2.8
1,416,028	+				-2.4
1,416,028	+				-0.1
1,416,028	+				-0.8
1,416,028	+				+0.9
1,416,036	-				+0.5
1,416,036	-				+0.7
1,416,036	-				-0.9
1,416,036	-				+0.6
1,416,036	-				+0.6
1,416,044	-				+0.7
1,416,055	+				+0.7
1,416,109	-				+1.8
1,416,191	+				+1.0
1,416,251	+				+0.4
1,416,259	-				+1.0
1,416,329	+		CSW01_06725	0.16	-0.7
1,416,337	-		CSW01_06725	0.17	+1.3