Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_05950

Experiment: ICP3_phage_411_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_05940 and CSW01_05945 are separated by 20 nucleotidesCSW01_05945 and CSW01_05950 overlap by 4 nucleotidesCSW01_05950 and CSW01_05955 are separated by 133 nucleotidesCSW01_05955 and CSW01_05960 are separated by 64 nucleotides CSW01_05940: CSW01_05940 - anthranilate phosphoribosyltransferase, at 1,244,442 to 1,245,440 _05940 CSW01_05945: CSW01_05945 - type 1 glutamine amidotransferase, at 1,245,461 to 1,246,072 _05945 CSW01_05950: CSW01_05950 - anthranilate synthase component I, at 1,246,069 to 1,247,640 _05950 CSW01_05955: CSW01_05955 - Trp operon leader peptide, at 1,247,774 to 1,247,911 _05955 CSW01_05960: CSW01_05960 - PHP domain-containing protein, at 1,247,976 to 1,248,848 _05960 Position (kb) 1246 1247 1248Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1245.077 kb on + strand, within CSW01_05940at 1245.085 kb on - strand, within CSW01_05940at 1245.085 kb on - strand, within CSW01_05940at 1245.230 kb on - strand, within CSW01_05940at 1245.250 kb on + strand, within CSW01_05940at 1245.282 kb on + strand, within CSW01_05940at 1245.318 kb on + strand, within CSW01_05940at 1245.384 kb on + strandat 1245.403 kb on - strandat 1245.531 kb on - strand, within CSW01_05945at 1245.569 kb on + strand, within CSW01_05945at 1245.683 kb on + strand, within CSW01_05945at 1245.690 kb on + strand, within CSW01_05945at 1245.690 kb on + strand, within CSW01_05945at 1245.690 kb on + strand, within CSW01_05945at 1245.800 kb on + strand, within CSW01_05945at 1245.808 kb on + strand, within CSW01_05945at 1245.808 kb on + strand, within CSW01_05945at 1245.808 kb on + strand, within CSW01_05945at 1245.859 kb on + strand, within CSW01_05945at 1245.918 kb on + strand, within CSW01_05945at 1245.918 kb on + strand, within CSW01_05945at 1245.999 kb on + strand, within CSW01_05945at 1246.027 kb on - strandat 1246.075 kb on - strandat 1246.090 kb on + strandat 1246.160 kb on - strandat 1246.167 kb on - strandat 1246.180 kb on + strandat 1246.180 kb on + strandat 1246.180 kb on + strandat 1246.227 kb on + strand, within CSW01_05950at 1246.246 kb on + strand, within CSW01_05950at 1246.267 kb on - strand, within CSW01_05950at 1246.294 kb on + strand, within CSW01_05950at 1246.367 kb on - strand, within CSW01_05950at 1246.379 kb on - strand, within CSW01_05950at 1246.470 kb on - strand, within CSW01_05950at 1246.508 kb on + strand, within CSW01_05950at 1246.572 kb on + strand, within CSW01_05950at 1246.709 kb on + strand, within CSW01_05950at 1246.709 kb on + strand, within CSW01_05950at 1246.727 kb on - strand, within CSW01_05950at 1246.755 kb on + strand, within CSW01_05950at 1246.760 kb on + strand, within CSW01_05950at 1246.763 kb on - strand, within CSW01_05950at 1246.794 kb on + strand, within CSW01_05950at 1246.802 kb on + strand, within CSW01_05950at 1246.835 kb on + strand, within CSW01_05950at 1246.835 kb on + strand, within CSW01_05950at 1246.843 kb on - strand, within CSW01_05950at 1246.843 kb on - strand, within CSW01_05950at 1246.874 kb on - strand, within CSW01_05950at 1246.874 kb on - strand, within CSW01_05950at 1246.893 kb on + strand, within CSW01_05950at 1246.936 kb on + strand, within CSW01_05950at 1246.939 kb on - strand, within CSW01_05950at 1247.085 kb on + strand, within CSW01_05950at 1247.156 kb on - strand, within CSW01_05950at 1247.156 kb on - strand, within CSW01_05950at 1247.156 kb on - strand, within CSW01_05950at 1247.186 kb on + strand, within CSW01_05950at 1247.186 kb on + strand, within CSW01_05950at 1247.186 kb on + strand, within CSW01_05950at 1247.186 kb on + strand, within CSW01_05950at 1247.186 kb on + strand, within CSW01_05950at 1247.186 kb on + strand, within CSW01_05950at 1247.186 kb on + strand, within CSW01_05950at 1247.194 kb on - strand, within CSW01_05950at 1247.194 kb on - strand, within CSW01_05950at 1247.194 kb on - strand, within CSW01_05950at 1247.194 kb on - strand, within CSW01_05950at 1247.194 kb on - strand, within CSW01_05950at 1247.220 kb on + strand, within CSW01_05950at 1247.220 kb on + strand, within CSW01_05950at 1247.230 kb on + strand, within CSW01_05950at 1247.235 kb on + strand, within CSW01_05950at 1247.235 kb on + strand, within CSW01_05950at 1247.235 kb on + strand, within CSW01_05950at 1247.248 kb on - strand, within CSW01_05950at 1247.269 kb on + strand, within CSW01_05950at 1247.312 kb on - strand, within CSW01_05950at 1247.347 kb on - strand, within CSW01_05950at 1247.386 kb on - strand, within CSW01_05950at 1247.386 kb on - strand, within CSW01_05950at 1247.388 kb on + strand, within CSW01_05950at 1247.396 kb on - strand, within CSW01_05950at 1247.417 kb on - strand, within CSW01_05950at 1247.417 kb on - strand, within CSW01_05950at 1247.438 kb on + strand, within CSW01_05950at 1247.514 kb on + strandat 1247.586 kb on - strandat 1247.598 kb on - strandat 1247.648 kb on + strandat 1247.714 kb on - strandat 1247.758 kb on - strandat 1247.802 kb on - strand, within CSW01_05955at 1248.098 kb on + strand, within CSW01_05960at 1248.119 kb on + strand, within CSW01_05960at 1248.283 kb on + strand, within CSW01_05960at 1248.291 kb on - strand, within CSW01_05960at 1248.342 kb on + strand, within CSW01_05960at 1248.376 kb on - strand, within CSW01_05960at 1248.476 kb on + strand, within CSW01_05960at 1248.496 kb on + strand, within CSW01_05960at 1248.504 kb on - strand, within CSW01_05960at 1248.509 kb on - strand, within CSW01_05960at 1248.525 kb on + strand, within CSW01_05960

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1
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1,245,077 + CSW01_05940 0.64 -1.2
1,245,085 - CSW01_05940 0.64 +0.5
1,245,085 - CSW01_05940 0.64 +2.1
1,245,230 - CSW01_05940 0.79 -1.2
1,245,250 + CSW01_05940 0.81 +1.0
1,245,282 + CSW01_05940 0.84 +2.4
1,245,318 + CSW01_05940 0.88 -2.9
1,245,384 + -3.9
1,245,403 - -2.7
1,245,531 - CSW01_05945 0.11 +1.0
1,245,569 + CSW01_05945 0.18 -0.9
1,245,683 + CSW01_05945 0.36 +1.0
1,245,690 + CSW01_05945 0.37 -0.2
1,245,690 + CSW01_05945 0.37 -1.0
1,245,690 + CSW01_05945 0.37 -0.3
1,245,800 + CSW01_05945 0.55 +1.6
1,245,808 + CSW01_05945 0.57 -0.4
1,245,808 + CSW01_05945 0.57 -1.7
1,245,808 + CSW01_05945 0.57 -2.1
1,245,859 + CSW01_05945 0.65 -3.1
1,245,918 + CSW01_05945 0.75 +0.2
1,245,918 + CSW01_05945 0.75 -0.6
1,245,999 + CSW01_05945 0.88 -0.2
1,246,027 - -0.1
1,246,075 - -0.0
1,246,090 + -0.8
1,246,160 - -2.3
1,246,167 - +0.3
1,246,180 + +0.3
1,246,180 + +1.6
1,246,180 + -0.1
1,246,227 + CSW01_05950 0.10 +0.4
1,246,246 + CSW01_05950 0.11 -2.6
1,246,267 - CSW01_05950 0.13 +0.2
1,246,294 + CSW01_05950 0.14 -3.0
1,246,367 - CSW01_05950 0.19 -2.5
1,246,379 - CSW01_05950 0.20 +1.2
1,246,470 - CSW01_05950 0.26 -0.4
1,246,508 + CSW01_05950 0.28 +0.9
1,246,572 + CSW01_05950 0.32 -1.4
1,246,709 + CSW01_05950 0.41 -3.1
1,246,709 + CSW01_05950 0.41 +0.8
1,246,727 - CSW01_05950 0.42 -2.1
1,246,755 + CSW01_05950 0.44 -1.6
1,246,760 + CSW01_05950 0.44 +0.3
1,246,763 - CSW01_05950 0.44 +0.1
1,246,794 + CSW01_05950 0.46 -0.9
1,246,802 + CSW01_05950 0.47 -0.2
1,246,835 + CSW01_05950 0.49 -2.0
1,246,835 + CSW01_05950 0.49 -0.6
1,246,843 - CSW01_05950 0.49 +0.9
1,246,843 - CSW01_05950 0.49 -2.3
1,246,874 - CSW01_05950 0.51 +0.5
1,246,874 - CSW01_05950 0.51 +0.7
1,246,893 + CSW01_05950 0.52 -2.2
1,246,936 + CSW01_05950 0.55 +1.1
1,246,939 - CSW01_05950 0.55 -1.2
1,247,085 + CSW01_05950 0.65 -0.4
1,247,156 - CSW01_05950 0.69 -0.4
1,247,156 - CSW01_05950 0.69 -1.8
1,247,156 - CSW01_05950 0.69 -1.6
1,247,186 + CSW01_05950 0.71 +0.2
1,247,186 + CSW01_05950 0.71 -3.7
1,247,186 + CSW01_05950 0.71 -1.6
1,247,186 + CSW01_05950 0.71 +1.1
1,247,186 + CSW01_05950 0.71 -2.4
1,247,186 + CSW01_05950 0.71 -0.5
1,247,186 + CSW01_05950 0.71 -3.0
1,247,194 - CSW01_05950 0.72 -1.8
1,247,194 - CSW01_05950 0.72 -0.1
1,247,194 - CSW01_05950 0.72 -0.3
1,247,194 - CSW01_05950 0.72 +0.1
1,247,194 - CSW01_05950 0.72 -1.6
1,247,220 + CSW01_05950 0.73 -1.5
1,247,220 + CSW01_05950 0.73 -3.2
1,247,230 + CSW01_05950 0.74 +1.9
1,247,235 + CSW01_05950 0.74 +0.0
1,247,235 + CSW01_05950 0.74 -0.4
1,247,235 + CSW01_05950 0.74 -2.1
1,247,248 - CSW01_05950 0.75 -2.5
1,247,269 + CSW01_05950 0.76 -0.7
1,247,312 - CSW01_05950 0.79 -1.9
1,247,347 - CSW01_05950 0.81 +1.4
1,247,386 - CSW01_05950 0.84 -0.0
1,247,386 - CSW01_05950 0.84 +1.7
1,247,388 + CSW01_05950 0.84 +0.7
1,247,396 - CSW01_05950 0.84 -1.4
1,247,417 - CSW01_05950 0.86 -2.2
1,247,417 - CSW01_05950 0.86 -1.0
1,247,438 + CSW01_05950 0.87 -0.2
1,247,514 + -0.9
1,247,586 - +0.1
1,247,598 - -0.0
1,247,648 + -0.4
1,247,714 - +0.2
1,247,758 - -1.0
1,247,802 - CSW01_05955 0.20 -0.4
1,248,098 + CSW01_05960 0.14 -0.8
1,248,119 + CSW01_05960 0.16 +0.7
1,248,283 + CSW01_05960 0.35 +0.9
1,248,291 - CSW01_05960 0.36 -1.4
1,248,342 + CSW01_05960 0.42 -0.6
1,248,376 - CSW01_05960 0.46 +0.8
1,248,476 + CSW01_05960 0.57 +0.8
1,248,496 + CSW01_05960 0.60 +0.3
1,248,504 - CSW01_05960 0.60 -2.7
1,248,509 - CSW01_05960 0.61 +0.1
1,248,525 + CSW01_05960 0.63 -0.6

Or see this region's nucleotide sequence