Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04780

Experiment: ICP3_phage_411_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04775 and CSW01_04780 are separated by 175 nucleotidesCSW01_04780 and CSW01_04785 are separated by 489 nucleotides CSW01_04775: CSW01_04775 - polymerase, at 995,395 to 996,711 _04775 CSW01_04780: CSW01_04780 - hypothetical protein, at 996,887 to 997,492 _04780 CSW01_04785: CSW01_04785 - undecaprenyl-phosphate glucose phosphotransferase, at 997,982 to 999,379 _04785 Position (kb) 996 997 998Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 995.997 kb on - strand, within CSW01_04775at 996.028 kb on + strand, within CSW01_04775at 996.028 kb on + strand, within CSW01_04775at 996.033 kb on + strand, within CSW01_04775at 996.033 kb on + strand, within CSW01_04775at 996.033 kb on + strand, within CSW01_04775at 996.036 kb on - strand, within CSW01_04775at 996.041 kb on - strand, within CSW01_04775at 996.041 kb on - strand, within CSW01_04775at 996.058 kb on - strand, within CSW01_04775at 996.132 kb on + strand, within CSW01_04775at 996.150 kb on + strand, within CSW01_04775at 996.158 kb on - strand, within CSW01_04775at 996.291 kb on + strand, within CSW01_04775at 996.300 kb on - strand, within CSW01_04775at 996.350 kb on + strand, within CSW01_04775at 996.490 kb on + strand, within CSW01_04775at 996.523 kb on + strand, within CSW01_04775at 996.545 kb on + strand, within CSW01_04775at 996.545 kb on + strand, within CSW01_04775at 996.545 kb on + strand, within CSW01_04775at 996.553 kb on - strand, within CSW01_04775at 996.553 kb on - strand, within CSW01_04775at 996.553 kb on - strand, within CSW01_04775at 996.553 kb on - strand, within CSW01_04775at 996.558 kb on - strand, within CSW01_04775at 996.563 kb on - strand, within CSW01_04775at 996.570 kb on + strand, within CSW01_04775at 996.626 kb on - strandat 996.640 kb on + strandat 996.666 kb on - strandat 996.727 kb on + strandat 996.760 kb on + strandat 996.814 kb on + strandat 996.814 kb on + strandat 996.903 kb on + strandat 996.912 kb on + strandat 996.917 kb on + strandat 996.941 kb on + strandat 996.943 kb on - strandat 996.978 kb on + strand, within CSW01_04780at 997.004 kb on + strand, within CSW01_04780at 997.131 kb on + strand, within CSW01_04780at 997.164 kb on + strand, within CSW01_04780at 997.167 kb on - strand, within CSW01_04780at 997.172 kb on - strand, within CSW01_04780at 997.174 kb on - strand, within CSW01_04780at 997.255 kb on + strand, within CSW01_04780at 997.255 kb on + strand, within CSW01_04780at 997.255 kb on + strand, within CSW01_04780at 997.263 kb on - strand, within CSW01_04780at 997.263 kb on - strand, within CSW01_04780at 997.263 kb on - strand, within CSW01_04780at 997.263 kb on - strand, within CSW01_04780at 997.263 kb on - strand, within CSW01_04780at 997.263 kb on - strand, within CSW01_04780at 997.263 kb on - strand, within CSW01_04780at 997.299 kb on + strand, within CSW01_04780at 997.336 kb on + strand, within CSW01_04780at 997.336 kb on + strand, within CSW01_04780at 997.336 kb on + strand, within CSW01_04780at 997.344 kb on - strand, within CSW01_04780at 997.359 kb on + strand, within CSW01_04780at 997.361 kb on + strand, within CSW01_04780at 997.361 kb on + strand, within CSW01_04780at 997.361 kb on + strand, within CSW01_04780at 997.361 kb on + strand, within CSW01_04780at 997.361 kb on + strand, within CSW01_04780at 997.369 kb on - strand, within CSW01_04780at 997.369 kb on - strand, within CSW01_04780at 997.370 kb on + strand, within CSW01_04780at 997.373 kb on + strand, within CSW01_04780at 997.375 kb on + strand, within CSW01_04780at 997.375 kb on + strand, within CSW01_04780at 997.375 kb on + strand, within CSW01_04780at 997.375 kb on + strand, within CSW01_04780at 997.377 kb on + strand, within CSW01_04780at 997.377 kb on + strand, within CSW01_04780at 997.377 kb on + strand, within CSW01_04780at 997.377 kb on + strand, within CSW01_04780at 997.378 kb on - strand, within CSW01_04780at 997.382 kb on + strand, within CSW01_04780at 997.382 kb on + strand, within CSW01_04780at 997.382 kb on + strand, within CSW01_04780at 997.382 kb on + strand, within CSW01_04780at 997.382 kb on + strand, within CSW01_04780at 997.382 kb on + strand, within CSW01_04780at 997.382 kb on + strand, within CSW01_04780at 997.382 kb on + strand, within CSW01_04780at 997.383 kb on + strand, within CSW01_04780at 997.383 kb on - strand, within CSW01_04780at 997.390 kb on - strand, within CSW01_04780at 997.390 kb on - strand, within CSW01_04780at 997.400 kb on - strand, within CSW01_04780at 997.400 kb on - strand, within CSW01_04780at 997.401 kb on - strand, within CSW01_04780at 997.460 kb on + strandat 997.463 kb on - strandat 997.468 kb on - strandat 997.479 kb on + strandat 997.567 kb on - strandat 997.809 kb on + strandat 997.967 kb on + strandat 997.967 kb on + strandat 997.967 kb on + strandat 997.975 kb on - strandat 997.975 kb on - strandat 997.975 kb on - strandat 997.975 kb on - strandat 997.977 kb on + strandat 997.977 kb on + strandat 998.088 kb on + strandat 998.110 kb on - strandat 998.177 kb on - strand, within CSW01_04785at 998.184 kb on - strand, within CSW01_04785at 998.187 kb on - strand, within CSW01_04785at 998.194 kb on - strand, within CSW01_04785at 998.206 kb on - strand, within CSW01_04785at 998.233 kb on + strand, within CSW01_04785at 998.233 kb on + strand, within CSW01_04785at 998.233 kb on + strand, within CSW01_04785at 998.241 kb on - strand, within CSW01_04785at 998.241 kb on - strand, within CSW01_04785at 998.255 kb on + strand, within CSW01_04785at 998.255 kb on + strand, within CSW01_04785at 998.255 kb on + strand, within CSW01_04785at 998.263 kb on - strand, within CSW01_04785at 998.263 kb on - strand, within CSW01_04785at 998.263 kb on - strand, within CSW01_04785at 998.269 kb on + strand, within CSW01_04785at 998.344 kb on + strand, within CSW01_04785at 998.444 kb on + strand, within CSW01_04785at 998.446 kb on - strand, within CSW01_04785

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1
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995,997 - CSW01_04775 0.46 -1.3
996,028 + CSW01_04775 0.48 +0.3
996,028 + CSW01_04775 0.48 -1.7
996,033 + CSW01_04775 0.48 +0.9
996,033 + CSW01_04775 0.48 -0.0
996,033 + CSW01_04775 0.48 +0.0
996,036 - CSW01_04775 0.49 +0.9
996,041 - CSW01_04775 0.49 -2.2
996,041 - CSW01_04775 0.49 +0.1
996,058 - CSW01_04775 0.50 +0.6
996,132 + CSW01_04775 0.56 +1.6
996,150 + CSW01_04775 0.57 -0.0
996,158 - CSW01_04775 0.58 +0.3
996,291 + CSW01_04775 0.68 -4.5
996,300 - CSW01_04775 0.69 +0.5
996,350 + CSW01_04775 0.73 +1.1
996,490 + CSW01_04775 0.83 +0.3
996,523 + CSW01_04775 0.86 -0.7
996,545 + CSW01_04775 0.87 -1.3
996,545 + CSW01_04775 0.87 -0.8
996,545 + CSW01_04775 0.87 +1.0
996,553 - CSW01_04775 0.88 -0.8
996,553 - CSW01_04775 0.88 -0.8
996,553 - CSW01_04775 0.88 -1.1
996,553 - CSW01_04775 0.88 +0.7
996,558 - CSW01_04775 0.88 -1.2
996,563 - CSW01_04775 0.89 +0.5
996,570 + CSW01_04775 0.89 +1.2
996,626 - -1.2
996,640 + +0.7
996,666 - -1.0
996,727 + +0.1
996,760 + -1.7
996,814 + -0.3
996,814 + -0.2
996,903 + -2.8
996,912 + -1.1
996,917 + +0.5
996,941 + -0.9
996,943 - +1.2
996,978 + CSW01_04780 0.15 -1.5
997,004 + CSW01_04780 0.19 -0.5
997,131 + CSW01_04780 0.40 -2.0
997,164 + CSW01_04780 0.46 +0.3
997,167 - CSW01_04780 0.46 +0.5
997,172 - CSW01_04780 0.47 +0.6
997,174 - CSW01_04780 0.47 +0.4
997,255 + CSW01_04780 0.61 +1.4
997,255 + CSW01_04780 0.61 +1.1
997,255 + CSW01_04780 0.61 +0.4
997,263 - CSW01_04780 0.62 +1.4
997,263 - CSW01_04780 0.62 -0.0
997,263 - CSW01_04780 0.62 -1.2
997,263 - CSW01_04780 0.62 +0.4
997,263 - CSW01_04780 0.62 +0.2
997,263 - CSW01_04780 0.62 -0.1
997,263 - CSW01_04780 0.62 -2.6
997,299 + CSW01_04780 0.68 +1.1
997,336 + CSW01_04780 0.74 +0.7
997,336 + CSW01_04780 0.74 +0.1
997,336 + CSW01_04780 0.74 -1.0
997,344 - CSW01_04780 0.75 -0.1
997,359 + CSW01_04780 0.78 -2.6
997,361 + CSW01_04780 0.78 +0.6
997,361 + CSW01_04780 0.78 -0.2
997,361 + CSW01_04780 0.78 -0.7
997,361 + CSW01_04780 0.78 +0.7
997,361 + CSW01_04780 0.78 +0.2
997,369 - CSW01_04780 0.80 -0.3
997,369 - CSW01_04780 0.80 +0.7
997,370 + CSW01_04780 0.80 +0.2
997,373 + CSW01_04780 0.80 -1.6
997,375 + CSW01_04780 0.81 +0.3
997,375 + CSW01_04780 0.81 +0.9
997,375 + CSW01_04780 0.81 -0.3
997,375 + CSW01_04780 0.81 -0.1
997,377 + CSW01_04780 0.81 -0.6
997,377 + CSW01_04780 0.81 +0.6
997,377 + CSW01_04780 0.81 +0.1
997,377 + CSW01_04780 0.81 -1.2
997,378 - CSW01_04780 0.81 -0.1
997,382 + CSW01_04780 0.82 +0.6
997,382 + CSW01_04780 0.82 +0.9
997,382 + CSW01_04780 0.82 -1.6
997,382 + CSW01_04780 0.82 -2.4
997,382 + CSW01_04780 0.82 +1.7
997,382 + CSW01_04780 0.82 +0.9
997,382 + CSW01_04780 0.82 +0.4
997,382 + CSW01_04780 0.82 -1.6
997,383 + CSW01_04780 0.82 +0.2
997,383 - CSW01_04780 0.82 +0.2
997,390 - CSW01_04780 0.83 +0.4
997,390 - CSW01_04780 0.83 -2.1
997,400 - CSW01_04780 0.85 +0.9
997,400 - CSW01_04780 0.85 -0.2
997,401 - CSW01_04780 0.85 -1.6
997,460 + +1.6
997,463 - -0.4
997,468 - +1.0
997,479 + -0.2
997,567 - -0.2
997,809 + -1.1
997,967 + +1.2
997,967 + -2.4
997,967 + -0.1
997,975 - -0.8
997,975 - -1.5
997,975 - +0.4
997,975 - +0.6
997,977 + -0.4
997,977 + +1.1
998,088 + +0.9
998,110 - +0.6
998,177 - CSW01_04785 0.14 -2.2
998,184 - CSW01_04785 0.14 +1.2
998,187 - CSW01_04785 0.15 +0.3
998,194 - CSW01_04785 0.15 +0.0
998,206 - CSW01_04785 0.16 +0.3
998,233 + CSW01_04785 0.18 -1.7
998,233 + CSW01_04785 0.18 +0.8
998,233 + CSW01_04785 0.18 -0.6
998,241 - CSW01_04785 0.19 -0.2
998,241 - CSW01_04785 0.19 -0.1
998,255 + CSW01_04785 0.20 +0.1
998,255 + CSW01_04785 0.20 +0.3
998,255 + CSW01_04785 0.20 -2.0
998,263 - CSW01_04785 0.20 -1.9
998,263 - CSW01_04785 0.20 +0.3
998,263 - CSW01_04785 0.20 -2.7
998,269 + CSW01_04785 0.21 +0.8
998,344 + CSW01_04785 0.26 -0.6
998,444 + CSW01_04785 0.33 +0.2
998,446 - CSW01_04785 0.33 +0.2

Or see this region's nucleotide sequence