Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04715

Experiment: ICP3_phage_411_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04710 and CSW01_04715 overlap by 4 nucleotidesCSW01_04715 and CSW01_04720 overlap by 4 nucleotides CSW01_04710: CSW01_04710 - UDP-N-acetyl-D-mannosamine dehydrogenase, at 979,334 to 980,575 _04710 CSW01_04715: CSW01_04715 - serine acetyltransferase, at 980,572 to 981,126 _04715 CSW01_04720: CSW01_04720 - glycosyl transferase family 1, at 981,123 to 982,271 _04720 Position (kb) 980 981 982Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 979.632 kb on - strand, within CSW01_04710at 979.748 kb on + strand, within CSW01_04710at 979.756 kb on - strand, within CSW01_04710at 979.803 kb on + strand, within CSW01_04710at 979.803 kb on + strand, within CSW01_04710at 979.811 kb on - strand, within CSW01_04710at 979.847 kb on + strand, within CSW01_04710at 979.873 kb on + strand, within CSW01_04710at 979.896 kb on + strand, within CSW01_04710at 979.906 kb on + strand, within CSW01_04710at 979.906 kb on + strand, within CSW01_04710at 979.906 kb on + strand, within CSW01_04710at 979.914 kb on - strand, within CSW01_04710at 979.914 kb on - strand, within CSW01_04710at 979.914 kb on - strand, within CSW01_04710at 979.915 kb on - strand, within CSW01_04710at 980.020 kb on + strand, within CSW01_04710at 980.052 kb on + strand, within CSW01_04710at 980.057 kb on + strand, within CSW01_04710at 980.084 kb on - strand, within CSW01_04710at 980.125 kb on + strand, within CSW01_04710at 980.138 kb on - strand, within CSW01_04710at 980.180 kb on + strand, within CSW01_04710at 980.188 kb on - strand, within CSW01_04710at 980.198 kb on - strand, within CSW01_04710at 980.219 kb on + strand, within CSW01_04710at 980.288 kb on + strand, within CSW01_04710at 980.288 kb on + strand, within CSW01_04710at 980.333 kb on + strand, within CSW01_04710at 980.341 kb on - strand, within CSW01_04710at 980.341 kb on - strand, within CSW01_04710at 980.460 kb on + strandat 980.468 kb on - strandat 980.592 kb on + strandat 980.600 kb on - strandat 980.600 kb on - strandat 980.600 kb on - strandat 980.630 kb on + strand, within CSW01_04715at 980.630 kb on + strand, within CSW01_04715at 980.638 kb on - strand, within CSW01_04715at 980.638 kb on - strand, within CSW01_04715at 980.695 kb on - strand, within CSW01_04715at 980.803 kb on + strand, within CSW01_04715at 980.803 kb on + strand, within CSW01_04715at 980.811 kb on - strand, within CSW01_04715at 980.811 kb on - strand, within CSW01_04715at 980.887 kb on - strand, within CSW01_04715at 980.995 kb on + strand, within CSW01_04715at 981.003 kb on - strand, within CSW01_04715at 981.059 kb on - strand, within CSW01_04715at 981.089 kb on + strandat 981.125 kb on + strandat 981.223 kb on - strandat 981.236 kb on - strandat 981.262 kb on + strand, within CSW01_04720at 981.270 kb on - strand, within CSW01_04720at 981.284 kb on + strand, within CSW01_04720at 981.318 kb on + strand, within CSW01_04720at 981.365 kb on + strand, within CSW01_04720at 981.365 kb on + strand, within CSW01_04720at 981.440 kb on + strand, within CSW01_04720at 981.452 kb on - strand, within CSW01_04720at 981.454 kb on - strand, within CSW01_04720at 981.489 kb on + strand, within CSW01_04720at 981.489 kb on + strand, within CSW01_04720at 981.497 kb on - strand, within CSW01_04720at 981.576 kb on - strand, within CSW01_04720at 981.682 kb on + strand, within CSW01_04720at 981.685 kb on - strand, within CSW01_04720at 981.713 kb on + strand, within CSW01_04720at 981.722 kb on + strand, within CSW01_04720at 981.756 kb on - strand, within CSW01_04720at 981.792 kb on + strand, within CSW01_04720at 981.800 kb on - strand, within CSW01_04720at 981.805 kb on + strand, within CSW01_04720at 981.805 kb on + strand, within CSW01_04720at 981.805 kb on + strand, within CSW01_04720at 981.805 kb on + strand, within CSW01_04720at 981.813 kb on - strand, within CSW01_04720at 981.813 kb on - strand, within CSW01_04720at 981.813 kb on - strand, within CSW01_04720at 981.813 kb on - strand, within CSW01_04720at 981.813 kb on - strand, within CSW01_04720at 981.813 kb on - strand, within CSW01_04720at 981.899 kb on + strand, within CSW01_04720at 981.934 kb on + strand, within CSW01_04720at 981.934 kb on + strand, within CSW01_04720at 981.934 kb on + strand, within CSW01_04720at 981.934 kb on + strand, within CSW01_04720at 981.944 kb on + strand, within CSW01_04720at 982.005 kb on + strand, within CSW01_04720at 982.012 kb on + strand, within CSW01_04720at 982.093 kb on + strand, within CSW01_04720

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1
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979,632 - CSW01_04710 0.24 -2.2
979,748 + CSW01_04710 0.33 -0.3
979,756 - CSW01_04710 0.34 -0.1
979,803 + CSW01_04710 0.38 +0.7
979,803 + CSW01_04710 0.38 +0.4
979,811 - CSW01_04710 0.38 -1.2
979,847 + CSW01_04710 0.41 +2.5
979,873 + CSW01_04710 0.43 -0.1
979,896 + CSW01_04710 0.45 -3.4
979,906 + CSW01_04710 0.46 -2.7
979,906 + CSW01_04710 0.46 +0.0
979,906 + CSW01_04710 0.46 +1.1
979,914 - CSW01_04710 0.47 -0.3
979,914 - CSW01_04710 0.47 +1.4
979,914 - CSW01_04710 0.47 -1.5
979,915 - CSW01_04710 0.47 +0.5
980,020 + CSW01_04710 0.55 +1.3
980,052 + CSW01_04710 0.58 +2.4
980,057 + CSW01_04710 0.58 -0.6
980,084 - CSW01_04710 0.60 +0.4
980,125 + CSW01_04710 0.64 -2.0
980,138 - CSW01_04710 0.65 +0.6
980,180 + CSW01_04710 0.68 -0.6
980,188 - CSW01_04710 0.69 -0.2
980,198 - CSW01_04710 0.70 -1.8
980,219 + CSW01_04710 0.71 -0.8
980,288 + CSW01_04710 0.77 +0.3
980,288 + CSW01_04710 0.77 -0.8
980,333 + CSW01_04710 0.80 -0.5
980,341 - CSW01_04710 0.81 -1.0
980,341 - CSW01_04710 0.81 -3.3
980,460 + +0.2
980,468 - -0.6
980,592 + -2.0
980,600 - -2.7
980,600 - +0.0
980,600 - -0.5
980,630 + CSW01_04715 0.10 -0.7
980,630 + CSW01_04715 0.10 +1.0
980,638 - CSW01_04715 0.12 +0.7
980,638 - CSW01_04715 0.12 +1.0
980,695 - CSW01_04715 0.22 -0.9
980,803 + CSW01_04715 0.42 +1.3
980,803 + CSW01_04715 0.42 -1.4
980,811 - CSW01_04715 0.43 +0.6
980,811 - CSW01_04715 0.43 +0.3
980,887 - CSW01_04715 0.57 -0.7
980,995 + CSW01_04715 0.76 +1.2
981,003 - CSW01_04715 0.78 +0.8
981,059 - CSW01_04715 0.88 -1.8
981,089 + -1.5
981,125 + +0.3
981,223 - +2.1
981,236 - +0.8
981,262 + CSW01_04720 0.12 +0.1
981,270 - CSW01_04720 0.13 +0.4
981,284 + CSW01_04720 0.14 +0.5
981,318 + CSW01_04720 0.17 +1.6
981,365 + CSW01_04720 0.21 +0.1
981,365 + CSW01_04720 0.21 +0.9
981,440 + CSW01_04720 0.28 +0.2
981,452 - CSW01_04720 0.29 -0.1
981,454 - CSW01_04720 0.29 -2.5
981,489 + CSW01_04720 0.32 -3.4
981,489 + CSW01_04720 0.32 +0.3
981,497 - CSW01_04720 0.33 -0.4
981,576 - CSW01_04720 0.39 -0.2
981,682 + CSW01_04720 0.49 +1.1
981,685 - CSW01_04720 0.49 -1.2
981,713 + CSW01_04720 0.51 +0.4
981,722 + CSW01_04720 0.52 -1.9
981,756 - CSW01_04720 0.55 -1.1
981,792 + CSW01_04720 0.58 +1.7
981,800 - CSW01_04720 0.59 +0.9
981,805 + CSW01_04720 0.59 +0.8
981,805 + CSW01_04720 0.59 +1.7
981,805 + CSW01_04720 0.59 +0.5
981,805 + CSW01_04720 0.59 -0.3
981,813 - CSW01_04720 0.60 +0.4
981,813 - CSW01_04720 0.60 +1.0
981,813 - CSW01_04720 0.60 +1.2
981,813 - CSW01_04720 0.60 +0.6
981,813 - CSW01_04720 0.60 +0.0
981,813 - CSW01_04720 0.60 -1.3
981,899 + CSW01_04720 0.68 -1.5
981,934 + CSW01_04720 0.71 -1.4
981,934 + CSW01_04720 0.71 -0.6
981,934 + CSW01_04720 0.71 +0.4
981,934 + CSW01_04720 0.71 -1.5
981,944 + CSW01_04720 0.71 -0.6
982,005 + CSW01_04720 0.77 -1.1
982,012 + CSW01_04720 0.77 +1.2
982,093 + CSW01_04720 0.84 -0.5

Or see this region's nucleotide sequence