Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04530

Experiment: ICP3_phage_411_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04520 and CSW01_04525 are separated by 65 nucleotidesCSW01_04525 and CSW01_04530 overlap by 4 nucleotidesCSW01_04530 and CSW01_04535 are separated by 764 nucleotides CSW01_04520: CSW01_04520 - aminobenzoyl-glutamate transporter, at 939,944 to 941,530 _04520 CSW01_04525: CSW01_04525 - DUF188 domain-containing protein, at 941,596 to 942,045 _04525 CSW01_04530: CSW01_04530 - hypothetical protein, at 942,042 to 942,341 _04530 CSW01_04535: CSW01_04535 - N-acetyltransferase, at 943,106 to 943,729 _04535 Position (kb) 942 943Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 941.151 kb on - strand, within CSW01_04520at 941.151 kb on - strand, within CSW01_04520at 941.151 kb on - strand, within CSW01_04520at 941.153 kb on + strand, within CSW01_04520at 941.274 kb on + strand, within CSW01_04520at 941.274 kb on + strand, within CSW01_04520at 941.329 kb on - strand, within CSW01_04520at 941.354 kb on - strand, within CSW01_04520at 941.354 kb on - strand, within CSW01_04520at 941.354 kb on - strand, within CSW01_04520at 941.368 kb on + strand, within CSW01_04520at 941.447 kb on + strandat 941.469 kb on - strandat 941.601 kb on - strandat 941.748 kb on + strand, within CSW01_04525at 941.753 kb on + strand, within CSW01_04525at 941.836 kb on - strand, within CSW01_04525at 941.896 kb on + strand, within CSW01_04525at 941.896 kb on + strand, within CSW01_04525at 941.896 kb on + strand, within CSW01_04525at 941.969 kb on + strand, within CSW01_04525at 941.970 kb on - strand, within CSW01_04525at 942.032 kb on + strandat 942.032 kb on + strandat 942.063 kb on - strandat 942.088 kb on + strand, within CSW01_04530at 942.131 kb on + strand, within CSW01_04530at 942.131 kb on + strand, within CSW01_04530at 942.131 kb on + strand, within CSW01_04530at 942.139 kb on - strand, within CSW01_04530at 942.139 kb on - strand, within CSW01_04530at 942.139 kb on - strand, within CSW01_04530at 942.139 kb on - strand, within CSW01_04530at 942.139 kb on - strand, within CSW01_04530at 942.139 kb on - strand, within CSW01_04530at 942.139 kb on - strand, within CSW01_04530at 942.139 kb on - strand, within CSW01_04530at 942.139 kb on - strand, within CSW01_04530at 942.180 kb on + strand, within CSW01_04530at 942.225 kb on + strand, within CSW01_04530at 942.225 kb on + strand, within CSW01_04530at 942.250 kb on + strand, within CSW01_04530at 942.250 kb on + strand, within CSW01_04530at 942.328 kb on + strandat 942.336 kb on - strandat 942.371 kb on - strandat 942.407 kb on + strandat 942.428 kb on - strandat 942.525 kb on + strandat 942.663 kb on + strandat 942.719 kb on + strandat 942.719 kb on + strandat 942.727 kb on - strandat 942.752 kb on - strandat 942.792 kb on + strandat 942.795 kb on - strandat 942.807 kb on + strandat 942.813 kb on + strandat 942.857 kb on + strandat 942.888 kb on - strandat 942.990 kb on - strandat 943.006 kb on + strandat 943.077 kb on + strandat 943.085 kb on - strandat 943.085 kb on - strandat 943.085 kb on - strandat 943.228 kb on + strand, within CSW01_04535at 943.228 kb on + strand, within CSW01_04535at 943.236 kb on - strand, within CSW01_04535

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1
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941,151 - CSW01_04520 0.76 -3.0
941,151 - CSW01_04520 0.76 +1.0
941,151 - CSW01_04520 0.76 +0.2
941,153 + CSW01_04520 0.76 +0.6
941,274 + CSW01_04520 0.84 +0.5
941,274 + CSW01_04520 0.84 -1.4
941,329 - CSW01_04520 0.87 -0.7
941,354 - CSW01_04520 0.89 -3.3
941,354 - CSW01_04520 0.89 +0.8
941,354 - CSW01_04520 0.89 -2.2
941,368 + CSW01_04520 0.90 +0.8
941,447 + -0.5
941,469 - +0.5
941,601 - +0.6
941,748 + CSW01_04525 0.34 +0.2
941,753 + CSW01_04525 0.35 -3.0
941,836 - CSW01_04525 0.53 +0.4
941,896 + CSW01_04525 0.67 +1.1
941,896 + CSW01_04525 0.67 -0.2
941,896 + CSW01_04525 0.67 +0.7
941,969 + CSW01_04525 0.83 -0.7
941,970 - CSW01_04525 0.83 +2.2
942,032 + -0.8
942,032 + +1.3
942,063 - +1.4
942,088 + CSW01_04530 0.15 -1.2
942,131 + CSW01_04530 0.30 -0.9
942,131 + CSW01_04530 0.30 -2.4
942,131 + CSW01_04530 0.30 +0.1
942,139 - CSW01_04530 0.32 -0.3
942,139 - CSW01_04530 0.32 -0.0
942,139 - CSW01_04530 0.32 +0.4
942,139 - CSW01_04530 0.32 -0.0
942,139 - CSW01_04530 0.32 +2.4
942,139 - CSW01_04530 0.32 -0.5
942,139 - CSW01_04530 0.32 -0.3
942,139 - CSW01_04530 0.32 -1.9
942,139 - CSW01_04530 0.32 -2.6
942,180 + CSW01_04530 0.46 -3.2
942,225 + CSW01_04530 0.61 +0.2
942,225 + CSW01_04530 0.61 +0.7
942,250 + CSW01_04530 0.69 -0.4
942,250 + CSW01_04530 0.69 -1.5
942,328 + -0.5
942,336 - -2.0
942,371 - +2.1
942,407 + -2.0
942,428 - -1.6
942,525 + -0.9
942,663 + +1.9
942,719 + +1.4
942,719 + -1.7
942,727 - -0.6
942,752 - -3.6
942,792 + -0.3
942,795 - -0.1
942,807 + -2.6
942,813 + +1.5
942,857 + -0.7
942,888 - -1.6
942,990 - +0.1
943,006 + +0.8
943,077 + -1.2
943,085 - -1.0
943,085 - +0.3
943,085 - +0.5
943,228 + CSW01_04535 0.20 -1.0
943,228 + CSW01_04535 0.20 +0.9
943,236 - CSW01_04535 0.21 +1.1

Or see this region's nucleotide sequence