Experiment: ICP3_phage_411_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03905 and CSW01_03910 are separated by 13 nucleotides CSW01_03910 and CSW01_03915 are separated by 48 nucleotides CSW01_03915 and CSW01_03920 are separated by 219 nucleotides
CSW01_03905: CSW01_03905 - chaperone protein HscA, at 802,553 to 804,403
_03905
CSW01_03910: CSW01_03910 - ISC system 2Fe-2S type ferredoxin, at 804,417 to 804,755
_03910
CSW01_03915: CSW01_03915 - Fe-S assembly protein IscX, at 804,804 to 804,998
_03915
CSW01_03920: CSW01_03920 - peptidase B, at 805,218 to 806,507
_03920
Position (kb) 804
805 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 804.407 kb on + strand at 804.811 kb on + strand at 804.840 kb on - strand, within CSW01_03915 at 804.982 kb on - strand at 805.066 kb on - strand at 805.075 kb on + strand at 805.084 kb on - strand at 805.193 kb on - strand at 805.262 kb on + strand at 805.299 kb on + strand at 805.299 kb on + strand at 805.338 kb on - strand at 805.367 kb on - strand, within CSW01_03920 at 805.367 kb on - strand, within CSW01_03920 at 805.408 kb on - strand, within CSW01_03920 at 805.439 kb on + strand, within CSW01_03920 at 805.453 kb on - strand, within CSW01_03920 at 805.681 kb on - strand, within CSW01_03920 at 805.702 kb on - strand, within CSW01_03920 at 805.722 kb on - strand, within CSW01_03920
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1 remove 804,407 + +1.4 804,811 + -0.4 804,840 - CSW01_03915 0.18 +0.3 804,982 - -2.6 805,066 - -0.1 805,075 + +1.5 805,084 - -2.6 805,193 - +0.2 805,262 + -4.3 805,299 + +0.8 805,299 + +0.7 805,338 - +0.5 805,367 - CSW01_03920 0.12 -0.5 805,367 - CSW01_03920 0.12 -2.1 805,408 - CSW01_03920 0.15 -1.6 805,439 + CSW01_03920 0.17 -1.6 805,453 - CSW01_03920 0.18 -1.6 805,681 - CSW01_03920 0.36 -0.1 805,702 - CSW01_03920 0.38 -0.9 805,722 - CSW01_03920 0.39 -1.7
Or see this region's nucleotide sequence