Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03845

Experiment: ICP3_phage_411_MOI_rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_03840 and CSW01_03845 overlap by 46 nucleotidesCSW01_03845 and CSW01_03850 are separated by 10 nucleotides CSW01_03840: CSW01_03840 - tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA, at 791,700 to 792,758 _03840 CSW01_03845: CSW01_03845 - hypothetical protein, at 792,713 to 792,976 _03845 CSW01_03850: CSW01_03850 - tRNA guanosine(34) transglycosylase Tgt, at 792,987 to 794,126 _03850 Position (kb) 792 793Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 791.868 kb on + strand, within CSW01_03840at 791.878 kb on + strand, within CSW01_03840at 791.989 kb on + strand, within CSW01_03840at 792.036 kb on + strand, within CSW01_03840at 792.062 kb on - strand, within CSW01_03840at 792.071 kb on - strand, within CSW01_03840at 792.201 kb on + strand, within CSW01_03840at 792.201 kb on - strand, within CSW01_03840at 792.209 kb on - strand, within CSW01_03840at 792.289 kb on - strand, within CSW01_03840at 792.296 kb on - strand, within CSW01_03840at 792.304 kb on + strand, within CSW01_03840at 792.304 kb on + strand, within CSW01_03840at 792.304 kb on + strand, within CSW01_03840at 792.312 kb on - strand, within CSW01_03840at 792.312 kb on - strand, within CSW01_03840at 792.312 kb on - strand, within CSW01_03840at 792.312 kb on - strand, within CSW01_03840at 792.331 kb on + strand, within CSW01_03840at 792.331 kb on + strand, within CSW01_03840at 792.332 kb on + strand, within CSW01_03840at 792.332 kb on + strand, within CSW01_03840at 792.340 kb on - strand, within CSW01_03840at 792.459 kb on + strand, within CSW01_03840at 792.466 kb on - strand, within CSW01_03840at 792.467 kb on - strand, within CSW01_03840at 792.621 kb on + strand, within CSW01_03840at 792.621 kb on + strand, within CSW01_03840at 792.660 kb on - strandat 792.662 kb on + strandat 792.862 kb on - strand, within CSW01_03845at 792.879 kb on + strand, within CSW01_03845at 792.921 kb on - strand, within CSW01_03845at 792.968 kb on - strandat 793.062 kb on + strandat 793.062 kb on + strandat 793.062 kb on + strandat 793.062 kb on + strandat 793.062 kb on + strandat 793.062 kb on + strandat 793.070 kb on - strandat 793.070 kb on - strandat 793.070 kb on - strandat 793.070 kb on - strandat 793.070 kb on - strandat 793.070 kb on - strandat 793.117 kb on + strand, within CSW01_03850at 793.165 kb on + strand, within CSW01_03850at 793.173 kb on - strand, within CSW01_03850at 793.197 kb on - strand, within CSW01_03850at 793.243 kb on + strand, within CSW01_03850at 793.243 kb on + strand, within CSW01_03850at 793.243 kb on + strand, within CSW01_03850at 793.243 kb on + strand, within CSW01_03850at 793.243 kb on + strand, within CSW01_03850at 793.251 kb on - strand, within CSW01_03850at 793.251 kb on - strand, within CSW01_03850at 793.251 kb on - strand, within CSW01_03850at 793.251 kb on - strand, within CSW01_03850at 793.251 kb on - strand, within CSW01_03850at 793.251 kb on - strand, within CSW01_03850at 793.251 kb on - strand, within CSW01_03850at 793.251 kb on - strand, within CSW01_03850at 793.251 kb on - strand, within CSW01_03850at 793.256 kb on - strand, within CSW01_03850at 793.275 kb on - strand, within CSW01_03850at 793.295 kb on - strand, within CSW01_03850at 793.422 kb on - strand, within CSW01_03850at 793.423 kb on + strand, within CSW01_03850at 793.424 kb on + strand, within CSW01_03850at 793.432 kb on - strand, within CSW01_03850at 793.432 kb on - strand, within CSW01_03850at 793.510 kb on - strand, within CSW01_03850at 793.626 kb on - strand, within CSW01_03850at 793.633 kb on + strand, within CSW01_03850at 793.633 kb on + strand, within CSW01_03850at 793.641 kb on - strand, within CSW01_03850at 793.641 kb on - strand, within CSW01_03850at 793.641 kb on - strand, within CSW01_03850at 793.667 kb on - strand, within CSW01_03850at 793.677 kb on + strand, within CSW01_03850at 793.687 kb on + strand, within CSW01_03850at 793.695 kb on - strand, within CSW01_03850at 793.695 kb on - strand, within CSW01_03850at 793.695 kb on - strand, within CSW01_03850at 793.737 kb on + strand, within CSW01_03850at 793.748 kb on + strand, within CSW01_03850at 793.909 kb on - strand, within CSW01_03850at 793.969 kb on + strand, within CSW01_03850

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1
remove
791,868 + CSW01_03840 0.16 -2.3
791,878 + CSW01_03840 0.17 -3.7
791,989 + CSW01_03840 0.27 -2.6
792,036 + CSW01_03840 0.32 -0.5
792,062 - CSW01_03840 0.34 -1.9
792,071 - CSW01_03840 0.35 -0.7
792,201 + CSW01_03840 0.47 -2.1
792,201 - CSW01_03840 0.47 +1.5
792,209 - CSW01_03840 0.48 -0.1
792,289 - CSW01_03840 0.56 +0.2
792,296 - CSW01_03840 0.56 -0.8
792,304 + CSW01_03840 0.57 -0.1
792,304 + CSW01_03840 0.57 +0.5
792,304 + CSW01_03840 0.57 +0.8
792,312 - CSW01_03840 0.58 +1.4
792,312 - CSW01_03840 0.58 +1.0
792,312 - CSW01_03840 0.58 +0.8
792,312 - CSW01_03840 0.58 -0.0
792,331 + CSW01_03840 0.60 +1.0
792,331 + CSW01_03840 0.60 -0.4
792,332 + CSW01_03840 0.60 -1.2
792,332 + CSW01_03840 0.60 +1.3
792,340 - CSW01_03840 0.60 -1.3
792,459 + CSW01_03840 0.72 -0.5
792,466 - CSW01_03840 0.72 -3.5
792,467 - CSW01_03840 0.72 -0.1
792,621 + CSW01_03840 0.87 +1.3
792,621 + CSW01_03840 0.87 -1.5
792,660 - -0.4
792,662 + +2.7
792,862 - CSW01_03845 0.56 +0.6
792,879 + CSW01_03845 0.63 -2.2
792,921 - CSW01_03845 0.79 -3.1
792,968 - -0.5
793,062 + -2.4
793,062 + +0.6
793,062 + +2.0
793,062 + +0.8
793,062 + +0.9
793,062 + -2.0
793,070 - -0.9
793,070 - -3.4
793,070 - +0.7
793,070 - +0.9
793,070 - +0.2
793,070 - +0.9
793,117 + CSW01_03850 0.11 -1.0
793,165 + CSW01_03850 0.16 +1.1
793,173 - CSW01_03850 0.16 +0.9
793,197 - CSW01_03850 0.18 +0.9
793,243 + CSW01_03850 0.22 +0.9
793,243 + CSW01_03850 0.22 -0.9
793,243 + CSW01_03850 0.22 -2.4
793,243 + CSW01_03850 0.22 -0.7
793,243 + CSW01_03850 0.22 +0.3
793,251 - CSW01_03850 0.23 +0.3
793,251 - CSW01_03850 0.23 -2.2
793,251 - CSW01_03850 0.23 -0.9
793,251 - CSW01_03850 0.23 +1.4
793,251 - CSW01_03850 0.23 -3.4
793,251 - CSW01_03850 0.23 -1.1
793,251 - CSW01_03850 0.23 -1.9
793,251 - CSW01_03850 0.23 -2.1
793,251 - CSW01_03850 0.23 -1.1
793,256 - CSW01_03850 0.24 -0.5
793,275 - CSW01_03850 0.25 -0.5
793,295 - CSW01_03850 0.27 -1.3
793,422 - CSW01_03850 0.38 +0.8
793,423 + CSW01_03850 0.38 +1.4
793,424 + CSW01_03850 0.38 -1.1
793,432 - CSW01_03850 0.39 -0.4
793,432 - CSW01_03850 0.39 +0.8
793,510 - CSW01_03850 0.46 +0.4
793,626 - CSW01_03850 0.56 -1.4
793,633 + CSW01_03850 0.57 -2.3
793,633 + CSW01_03850 0.57 +0.6
793,641 - CSW01_03850 0.57 +1.0
793,641 - CSW01_03850 0.57 -1.6
793,641 - CSW01_03850 0.57 -2.0
793,667 - CSW01_03850 0.60 -2.3
793,677 + CSW01_03850 0.61 +2.6
793,687 + CSW01_03850 0.61 +0.3
793,695 - CSW01_03850 0.62 +0.2
793,695 - CSW01_03850 0.62 -0.8
793,695 - CSW01_03850 0.62 -1.9
793,737 + CSW01_03850 0.66 +0.9
793,748 + CSW01_03850 0.67 +1.7
793,909 - CSW01_03850 0.81 -2.4
793,969 + CSW01_03850 0.86 +0.2

Or see this region's nucleotide sequence