Experiment: ICP3_phage_411_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03750 and CSW01_03755 are separated by 150 nucleotides CSW01_03755 and CSW01_03760 are separated by 236 nucleotides CSW01_03760 and CSW01_03765 are separated by 21 nucleotides
CSW01_03750: CSW01_03750 - U32 family peptidase, at 768,311 to 769,711
_03750
CSW01_03755: CSW01_03755 - recombination-associated protein RdgC, at 769,862 to 770,776
_03755
CSW01_03760: CSW01_03760 - phosphate regulon transcriptional regulatory protein PhoB, at 771,013 to 771,702
_03760
CSW01_03765: CSW01_03765 - two-component system sensor histidine kinase PhoR, at 771,724 to 773,025
_03765
Position (kb) 769
770
771 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 768.862 kb on - strand, within CSW01_03750 at 768.995 kb on + strand, within CSW01_03750 at 769.022 kb on + strand, within CSW01_03750 at 769.038 kb on + strand, within CSW01_03750 at 769.046 kb on - strand, within CSW01_03750 at 769.046 kb on - strand, within CSW01_03750 at 769.048 kb on + strand, within CSW01_03750 at 769.055 kb on + strand, within CSW01_03750 at 769.190 kb on - strand, within CSW01_03750 at 769.218 kb on - strand, within CSW01_03750 at 769.320 kb on + strand, within CSW01_03750 at 769.399 kb on + strand, within CSW01_03750 at 769.404 kb on + strand, within CSW01_03750 at 769.418 kb on - strand, within CSW01_03750 at 769.418 kb on - strand, within CSW01_03750 at 769.454 kb on - strand, within CSW01_03750 at 769.474 kb on + strand, within CSW01_03750 at 769.474 kb on + strand, within CSW01_03750 at 769.474 kb on + strand, within CSW01_03750 at 769.474 kb on + strand, within CSW01_03750 at 769.482 kb on - strand, within CSW01_03750 at 769.494 kb on + strand, within CSW01_03750 at 769.525 kb on + strand, within CSW01_03750 at 769.600 kb on - strand at 769.671 kb on + strand at 769.671 kb on + strand at 769.671 kb on + strand at 769.679 kb on - strand at 769.679 kb on - strand at 769.679 kb on - strand at 769.745 kb on + strand at 769.748 kb on - strand at 769.748 kb on - strand at 769.753 kb on - strand at 769.753 kb on - strand at 769.753 kb on - strand at 769.771 kb on - strand at 769.771 kb on - strand at 769.800 kb on + strand at 770.105 kb on + strand, within CSW01_03755 at 770.143 kb on - strand, within CSW01_03755 at 770.184 kb on + strand, within CSW01_03755 at 770.189 kb on + strand, within CSW01_03755 at 770.209 kb on + strand, within CSW01_03755 at 770.209 kb on + strand, within CSW01_03755 at 770.209 kb on + strand, within CSW01_03755 at 770.209 kb on + strand, within CSW01_03755 at 770.217 kb on - strand, within CSW01_03755 at 770.217 kb on - strand, within CSW01_03755 at 770.217 kb on - strand, within CSW01_03755 at 770.236 kb on + strand, within CSW01_03755 at 770.244 kb on - strand, within CSW01_03755 at 770.303 kb on + strand, within CSW01_03755 at 770.340 kb on - strand, within CSW01_03755 at 770.510 kb on - strand, within CSW01_03755 at 770.625 kb on + strand, within CSW01_03755 at 770.633 kb on - strand, within CSW01_03755 at 770.633 kb on - strand, within CSW01_03755 at 770.633 kb on - strand, within CSW01_03755 at 770.633 kb on - strand, within CSW01_03755 at 770.638 kb on - strand, within CSW01_03755 at 770.729 kb on - strand at 770.760 kb on - strand at 770.893 kb on - strand at 770.901 kb on - strand at 770.945 kb on + strand at 770.945 kb on + strand at 770.945 kb on + strand at 771.054 kb on - strand at 771.061 kb on + strand at 771.234 kb on - strand, within CSW01_03760 at 771.293 kb on + strand, within CSW01_03760 at 771.293 kb on + strand, within CSW01_03760 at 771.293 kb on + strand, within CSW01_03760 at 771.293 kb on + strand, within CSW01_03760 at 771.301 kb on - strand, within CSW01_03760 at 771.301 kb on - strand, within CSW01_03760 at 771.301 kb on - strand, within CSW01_03760 at 771.301 kb on - strand, within CSW01_03760 at 771.301 kb on - strand, within CSW01_03760 at 771.301 kb on - strand, within CSW01_03760 at 771.301 kb on - strand, within CSW01_03760 at 771.301 kb on - strand, within CSW01_03760 at 771.301 kb on - strand, within CSW01_03760 at 771.322 kb on + strand, within CSW01_03760 at 771.364 kb on - strand, within CSW01_03760 at 771.391 kb on + strand, within CSW01_03760 at 771.517 kb on + strand, within CSW01_03760 at 771.517 kb on + strand, within CSW01_03760 at 771.525 kb on - strand, within CSW01_03760 at 771.537 kb on - strand, within CSW01_03760 at 771.557 kb on - strand, within CSW01_03760 at 771.626 kb on + strand, within CSW01_03760 at 771.676 kb on + strand at 771.679 kb on - strand at 771.684 kb on - strand at 771.697 kb on + strand at 771.697 kb on + strand at 771.697 kb on + strand at 771.697 kb on + strand at 771.697 kb on + strand at 771.705 kb on - strand at 771.705 kb on - strand at 771.705 kb on - strand at 771.705 kb on - strand at 771.705 kb on - strand at 771.705 kb on - strand at 771.705 kb on - strand at 771.705 kb on - strand at 771.705 kb on - strand at 771.707 kb on + strand at 771.715 kb on - strand at 771.755 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1 remove 768,862 - CSW01_03750 0.39 -0.5 768,995 + CSW01_03750 0.49 -3.1 769,022 + CSW01_03750 0.51 -4.2 769,038 + CSW01_03750 0.52 -1.3 769,046 - CSW01_03750 0.52 +0.8 769,046 - CSW01_03750 0.52 -1.0 769,048 + CSW01_03750 0.53 -1.0 769,055 + CSW01_03750 0.53 -2.4 769,190 - CSW01_03750 0.63 +1.5 769,218 - CSW01_03750 0.65 +0.3 769,320 + CSW01_03750 0.72 +1.3 769,399 + CSW01_03750 0.78 +1.7 769,404 + CSW01_03750 0.78 -0.0 769,418 - CSW01_03750 0.79 +0.4 769,418 - CSW01_03750 0.79 -0.3 769,454 - CSW01_03750 0.82 +0.2 769,474 + CSW01_03750 0.83 +0.7 769,474 + CSW01_03750 0.83 -1.9 769,474 + CSW01_03750 0.83 +0.1 769,474 + CSW01_03750 0.83 +0.5 769,482 - CSW01_03750 0.84 -0.5 769,494 + CSW01_03750 0.84 +1.7 769,525 + CSW01_03750 0.87 -0.2 769,600 - -2.7 769,671 + -0.3 769,671 + -1.5 769,671 + +0.1 769,679 - +1.8 769,679 - -1.6 769,679 - +1.4 769,745 + +0.6 769,748 - -0.7 769,748 - -0.2 769,753 - +0.3 769,753 - -0.4 769,753 - +0.3 769,771 - -1.0 769,771 - +0.4 769,800 + +0.3 770,105 + CSW01_03755 0.27 -0.9 770,143 - CSW01_03755 0.31 +0.6 770,184 + CSW01_03755 0.35 +1.5 770,189 + CSW01_03755 0.36 -2.0 770,209 + CSW01_03755 0.38 -2.1 770,209 + CSW01_03755 0.38 -1.0 770,209 + CSW01_03755 0.38 -0.7 770,209 + CSW01_03755 0.38 -0.5 770,217 - CSW01_03755 0.39 -0.6 770,217 - CSW01_03755 0.39 -0.5 770,217 - CSW01_03755 0.39 -0.3 770,236 + CSW01_03755 0.41 +0.6 770,244 - CSW01_03755 0.42 +0.3 770,303 + CSW01_03755 0.48 +0.2 770,340 - CSW01_03755 0.52 -2.3 770,510 - CSW01_03755 0.71 -0.4 770,625 + CSW01_03755 0.83 +0.1 770,633 - CSW01_03755 0.84 +0.3 770,633 - CSW01_03755 0.84 -1.1 770,633 - CSW01_03755 0.84 -0.7 770,633 - CSW01_03755 0.84 -0.7 770,638 - CSW01_03755 0.85 -1.0 770,729 - -0.5 770,760 - +0.0 770,893 - -0.5 770,901 - -0.8 770,945 + -0.5 770,945 + -2.1 770,945 + -0.9 771,054 - -0.9 771,061 + -1.1 771,234 - CSW01_03760 0.32 -0.8 771,293 + CSW01_03760 0.41 +0.3 771,293 + CSW01_03760 0.41 -0.9 771,293 + CSW01_03760 0.41 -0.5 771,293 + CSW01_03760 0.41 -1.8 771,301 - CSW01_03760 0.42 -0.6 771,301 - CSW01_03760 0.42 +0.1 771,301 - CSW01_03760 0.42 -1.4 771,301 - CSW01_03760 0.42 -2.1 771,301 - CSW01_03760 0.42 +0.6 771,301 - CSW01_03760 0.42 +1.0 771,301 - CSW01_03760 0.42 -0.5 771,301 - CSW01_03760 0.42 +1.0 771,301 - CSW01_03760 0.42 -0.7 771,322 + CSW01_03760 0.45 +0.5 771,364 - CSW01_03760 0.51 +0.1 771,391 + CSW01_03760 0.55 -0.6 771,517 + CSW01_03760 0.73 +0.3 771,517 + CSW01_03760 0.73 -1.7 771,525 - CSW01_03760 0.74 -2.9 771,537 - CSW01_03760 0.76 -2.6 771,557 - CSW01_03760 0.79 +0.3 771,626 + CSW01_03760 0.89 -1.5 771,676 + -2.9 771,679 - +1.1 771,684 - +1.9 771,697 + +0.4 771,697 + -0.5 771,697 + -2.7 771,697 + -1.3 771,697 + -0.5 771,705 - -0.4 771,705 - -0.6 771,705 - -0.4 771,705 - -2.7 771,705 - -1.7 771,705 - +0.2 771,705 - -0.1 771,705 - +0.1 771,705 - -1.2 771,707 + -0.4 771,715 - -0.9 771,755 + -0.3
Or see this region's nucleotide sequence