Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03695

Experiment: ICP3_phage_411_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03690 and CSW01_03695 are separated by 154 nucleotidesCSW01_03695 and CSW01_03700 are separated by 2 nucleotidesCSW01_03700 and CSW01_03705 are separated by 124 nucleotides CSW01_03690: CSW01_03690 - outer membrane protein assembly factor BamD, at 755,715 to 756,440 _03690 CSW01_03695: CSW01_03695 - ribosomal large subunit pseudouridine synthase D, at 756,595 to 757,569 _03695 CSW01_03700: CSW01_03700 - multi-copper polyphenol oxidoreductase, at 757,572 to 758,294 _03700 CSW01_03705: CSW01_03705 - chaperone protein ClpB, at 758,419 to 760,992 _03705 Position (kb) 756 757 758Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 755.722 kb on + strandat 755.730 kb on - strandat 756.489 kb on - strandat 756.633 kb on - strandat 756.819 kb on + strand, within CSW01_03695at 756.819 kb on + strand, within CSW01_03695at 756.829 kb on + strand, within CSW01_03695at 756.834 kb on + strand, within CSW01_03695at 756.834 kb on + strand, within CSW01_03695at 756.914 kb on + strand, within CSW01_03695at 756.922 kb on - strand, within CSW01_03695at 757.032 kb on - strand, within CSW01_03695at 757.063 kb on + strand, within CSW01_03695at 757.071 kb on - strand, within CSW01_03695at 757.078 kb on + strand, within CSW01_03695at 757.086 kb on - strand, within CSW01_03695at 757.131 kb on - strand, within CSW01_03695at 757.164 kb on - strand, within CSW01_03695at 757.333 kb on + strand, within CSW01_03695at 757.333 kb on + strand, within CSW01_03695at 757.333 kb on + strand, within CSW01_03695at 757.341 kb on - strand, within CSW01_03695at 757.341 kb on - strand, within CSW01_03695at 757.341 kb on - strand, within CSW01_03695at 757.341 kb on - strand, within CSW01_03695at 757.429 kb on - strand, within CSW01_03695at 757.517 kb on - strandat 757.520 kb on + strandat 757.520 kb on + strandat 757.520 kb on + strandat 757.520 kb on + strandat 757.528 kb on - strandat 757.528 kb on - strandat 757.528 kb on - strandat 757.528 kb on - strandat 757.530 kb on - strandat 757.648 kb on + strand, within CSW01_03700at 757.648 kb on + strand, within CSW01_03700at 757.659 kb on + strand, within CSW01_03700at 757.660 kb on + strand, within CSW01_03700at 757.660 kb on + strand, within CSW01_03700at 757.660 kb on + strand, within CSW01_03700at 757.660 kb on + strand, within CSW01_03700at 757.667 kb on - strand, within CSW01_03700at 757.668 kb on - strand, within CSW01_03700at 757.668 kb on - strand, within CSW01_03700at 757.668 kb on - strand, within CSW01_03700at 757.668 kb on - strand, within CSW01_03700at 757.668 kb on - strand, within CSW01_03700at 757.679 kb on - strand, within CSW01_03700at 757.687 kb on - strand, within CSW01_03700at 757.695 kb on + strand, within CSW01_03700at 757.698 kb on - strand, within CSW01_03700at 757.759 kb on + strand, within CSW01_03700at 757.790 kb on - strand, within CSW01_03700at 757.823 kb on - strand, within CSW01_03700at 757.848 kb on - strand, within CSW01_03700at 757.854 kb on + strand, within CSW01_03700at 757.919 kb on + strand, within CSW01_03700at 757.938 kb on + strand, within CSW01_03700at 757.965 kb on + strand, within CSW01_03700at 757.965 kb on + strand, within CSW01_03700at 757.965 kb on + strand, within CSW01_03700at 757.965 kb on + strand, within CSW01_03700at 757.965 kb on + strand, within CSW01_03700at 757.973 kb on - strand, within CSW01_03700at 758.006 kb on - strand, within CSW01_03700at 758.187 kb on + strand, within CSW01_03700at 758.189 kb on - strand, within CSW01_03700at 758.207 kb on - strand, within CSW01_03700at 758.209 kb on - strand, within CSW01_03700at 758.289 kb on + strandat 758.289 kb on + strandat 758.289 kb on - strandat 758.295 kb on + strandat 758.295 kb on + strandat 758.297 kb on - strandat 758.402 kb on + strandat 758.472 kb on + strandat 758.486 kb on + strandat 758.509 kb on + strandat 758.525 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1
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755,722 + +0.8
755,730 - +0.2
756,489 - +0.6
756,633 - -1.6
756,819 + CSW01_03695 0.23 -2.1
756,819 + CSW01_03695 0.23 -0.1
756,829 + CSW01_03695 0.24 -1.7
756,834 + CSW01_03695 0.25 -2.8
756,834 + CSW01_03695 0.25 -1.0
756,914 + CSW01_03695 0.33 -1.0
756,922 - CSW01_03695 0.34 -3.1
757,032 - CSW01_03695 0.45 -1.6
757,063 + CSW01_03695 0.48 -2.2
757,071 - CSW01_03695 0.49 -0.4
757,078 + CSW01_03695 0.50 -1.3
757,086 - CSW01_03695 0.50 -1.6
757,131 - CSW01_03695 0.55 -0.9
757,164 - CSW01_03695 0.58 -2.2
757,333 + CSW01_03695 0.76 -1.3
757,333 + CSW01_03695 0.76 -0.5
757,333 + CSW01_03695 0.76 -0.2
757,341 - CSW01_03695 0.77 -1.2
757,341 - CSW01_03695 0.77 -2.2
757,341 - CSW01_03695 0.77 -0.7
757,341 - CSW01_03695 0.77 -2.0
757,429 - CSW01_03695 0.86 -3.1
757,517 - -0.3
757,520 + -2.2
757,520 + -0.1
757,520 + -0.0
757,520 + -1.2
757,528 - +1.3
757,528 - -1.0
757,528 - -2.4
757,528 - -1.0
757,530 - -1.9
757,648 + CSW01_03700 0.11 -0.3
757,648 + CSW01_03700 0.11 +0.3
757,659 + CSW01_03700 0.12 +0.3
757,660 + CSW01_03700 0.12 -3.2
757,660 + CSW01_03700 0.12 -2.4
757,660 + CSW01_03700 0.12 -2.2
757,660 + CSW01_03700 0.12 +1.1
757,667 - CSW01_03700 0.13 -2.2
757,668 - CSW01_03700 0.13 -1.7
757,668 - CSW01_03700 0.13 +0.3
757,668 - CSW01_03700 0.13 -1.8
757,668 - CSW01_03700 0.13 -2.4
757,668 - CSW01_03700 0.13 -1.6
757,679 - CSW01_03700 0.15 +1.0
757,687 - CSW01_03700 0.16 -2.1
757,695 + CSW01_03700 0.17 +0.7
757,698 - CSW01_03700 0.17 +1.4
757,759 + CSW01_03700 0.26 -1.1
757,790 - CSW01_03700 0.30 -1.7
757,823 - CSW01_03700 0.35 +1.1
757,848 - CSW01_03700 0.38 -1.7
757,854 + CSW01_03700 0.39 -1.1
757,919 + CSW01_03700 0.48 -3.1
757,938 + CSW01_03700 0.51 -0.6
757,965 + CSW01_03700 0.54 -0.6
757,965 + CSW01_03700 0.54 -3.0
757,965 + CSW01_03700 0.54 +1.8
757,965 + CSW01_03700 0.54 -1.6
757,965 + CSW01_03700 0.54 +0.7
757,973 - CSW01_03700 0.55 +1.0
758,006 - CSW01_03700 0.60 +0.4
758,187 + CSW01_03700 0.85 +1.1
758,189 - CSW01_03700 0.85 +1.0
758,207 - CSW01_03700 0.88 -0.7
758,209 - CSW01_03700 0.88 -2.0
758,289 + -0.9
758,289 + -0.2
758,289 - -1.4
758,295 + -1.6
758,295 + -2.5
758,297 - +0.0
758,402 + +0.7
758,472 + -0.3
758,486 + +1.3
758,509 + +1.9
758,525 - +1.1

Or see this region's nucleotide sequence