Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03670

Experiment: ICP3_phage_411_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03655 and CSW01_03660 are separated by 9 nucleotidesCSW01_03660 and CSW01_03665 are separated by 77 nucleotidesCSW01_03665 and CSW01_03670 overlap by 80 nucleotidesCSW01_03670 and CSW01_03675 overlap by 17 nucleotides CSW01_03655: CSW01_03655 - murein transglycosylase, at 747,129 to 749,075 _03655 CSW01_03660: CSW01_03660 - trp operon repressor, at 749,085 to 749,441 _03660 CSW01_03665: CSW01_03665 - non-canonical purine NTP phosphatase, at 749,519 to 750,070 _03665 CSW01_03670: CSW01_03670 - biofilm architecture maintenance protein MbaA, at 749,991 to 752,366 _03670 CSW01_03675: CSW01_03675 - norspermidine sensor, at 752,350 to 753,429 _03675 Position (kb) 749 750 751 752 753Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 749.069 kb on + strandat 749.106 kb on + strandat 749.175 kb on - strand, within CSW01_03660at 749.194 kb on + strand, within CSW01_03660at 749.233 kb on + strand, within CSW01_03660at 749.241 kb on - strand, within CSW01_03660at 749.264 kb on + strand, within CSW01_03660at 749.285 kb on + strand, within CSW01_03660at 749.366 kb on + strand, within CSW01_03660at 749.397 kb on + strand, within CSW01_03660at 749.597 kb on + strand, within CSW01_03665at 749.655 kb on + strand, within CSW01_03665at 749.655 kb on + strand, within CSW01_03665at 749.734 kb on + strand, within CSW01_03665at 749.734 kb on + strand, within CSW01_03665at 749.744 kb on + strand, within CSW01_03665at 749.752 kb on - strand, within CSW01_03665at 749.799 kb on - strand, within CSW01_03665at 749.800 kb on - strand, within CSW01_03665at 749.826 kb on + strand, within CSW01_03665at 749.826 kb on + strand, within CSW01_03665at 749.833 kb on + strand, within CSW01_03665at 749.834 kb on - strand, within CSW01_03665at 749.836 kb on + strand, within CSW01_03665at 749.854 kb on + strand, within CSW01_03665at 749.873 kb on + strand, within CSW01_03665at 749.881 kb on - strand, within CSW01_03665at 749.904 kb on + strand, within CSW01_03665at 749.932 kb on + strand, within CSW01_03665at 749.935 kb on - strand, within CSW01_03665at 749.986 kb on - strand, within CSW01_03665at 749.986 kb on - strand, within CSW01_03665at 749.996 kb on - strandat 750.025 kb on + strandat 750.174 kb on - strandat 750.330 kb on + strand, within CSW01_03670at 750.330 kb on + strand, within CSW01_03670at 750.330 kb on + strand, within CSW01_03670at 750.330 kb on + strand, within CSW01_03670at 750.338 kb on - strand, within CSW01_03670at 750.338 kb on - strand, within CSW01_03670at 750.365 kb on - strand, within CSW01_03670at 750.403 kb on - strand, within CSW01_03670at 750.470 kb on + strand, within CSW01_03670at 750.473 kb on - strand, within CSW01_03670at 750.574 kb on + strand, within CSW01_03670at 750.617 kb on - strand, within CSW01_03670at 750.676 kb on - strand, within CSW01_03670at 750.765 kb on - strand, within CSW01_03670at 750.782 kb on + strand, within CSW01_03670at 750.824 kb on - strand, within CSW01_03670at 750.986 kb on + strand, within CSW01_03670at 750.986 kb on + strand, within CSW01_03670at 751.066 kb on - strand, within CSW01_03670at 751.222 kb on + strand, within CSW01_03670at 751.257 kb on + strand, within CSW01_03670at 751.273 kb on - strand, within CSW01_03670at 751.304 kb on + strand, within CSW01_03670at 751.363 kb on - strand, within CSW01_03670at 751.446 kb on - strand, within CSW01_03670at 751.446 kb on - strand, within CSW01_03670at 751.455 kb on + strand, within CSW01_03670at 751.479 kb on - strand, within CSW01_03670at 751.480 kb on + strand, within CSW01_03670at 751.481 kb on + strand, within CSW01_03670at 751.488 kb on - strand, within CSW01_03670at 751.579 kb on - strand, within CSW01_03670at 751.603 kb on + strand, within CSW01_03670at 751.603 kb on + strand, within CSW01_03670at 751.611 kb on - strand, within CSW01_03670at 751.611 kb on - strand, within CSW01_03670at 751.638 kb on + strand, within CSW01_03670at 751.680 kb on + strand, within CSW01_03670at 751.688 kb on - strand, within CSW01_03670at 751.698 kb on + strand, within CSW01_03670at 751.706 kb on - strand, within CSW01_03670at 751.783 kb on + strand, within CSW01_03670at 751.897 kb on - strand, within CSW01_03670at 751.966 kb on - strand, within CSW01_03670at 752.102 kb on + strand, within CSW01_03670at 752.166 kb on - strandat 752.182 kb on + strandat 752.201 kb on - strandat 752.257 kb on + strandat 752.306 kb on + strandat 752.314 kb on - strandat 752.316 kb on + strandat 752.488 kb on + strand, within CSW01_03675at 752.490 kb on + strand, within CSW01_03675at 752.490 kb on + strand, within CSW01_03675at 752.490 kb on + strand, within CSW01_03675at 752.490 kb on + strand, within CSW01_03675at 752.496 kb on - strand, within CSW01_03675at 752.498 kb on - strand, within CSW01_03675at 752.498 kb on - strand, within CSW01_03675at 752.498 kb on - strand, within CSW01_03675at 752.498 kb on - strand, within CSW01_03675at 752.599 kb on + strand, within CSW01_03675at 752.607 kb on - strand, within CSW01_03675at 752.635 kb on + strand, within CSW01_03675at 752.694 kb on - strand, within CSW01_03675at 752.694 kb on - strand, within CSW01_03675at 752.694 kb on - strand, within CSW01_03675at 752.729 kb on + strand, within CSW01_03675at 752.763 kb on + strand, within CSW01_03675at 752.767 kb on - strand, within CSW01_03675at 752.771 kb on - strand, within CSW01_03675at 752.782 kb on + strand, within CSW01_03675at 752.782 kb on + strand, within CSW01_03675at 752.782 kb on + strand, within CSW01_03675at 752.782 kb on + strand, within CSW01_03675at 752.790 kb on - strand, within CSW01_03675at 752.790 kb on - strand, within CSW01_03675at 752.805 kb on + strand, within CSW01_03675at 752.898 kb on - strand, within CSW01_03675at 752.902 kb on + strand, within CSW01_03675at 752.904 kb on + strand, within CSW01_03675at 752.912 kb on - strand, within CSW01_03675at 752.928 kb on - strand, within CSW01_03675at 752.929 kb on - strand, within CSW01_03675at 752.929 kb on - strand, within CSW01_03675at 752.949 kb on + strand, within CSW01_03675at 753.067 kb on - strand, within CSW01_03675at 753.194 kb on - strand, within CSW01_03675at 753.251 kb on - strand, within CSW01_03675at 753.361 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1
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749,069 + -0.5
749,106 + +0.1
749,175 - CSW01_03660 0.25 +0.4
749,194 + CSW01_03660 0.31 -2.9
749,233 + CSW01_03660 0.41 -1.3
749,241 - CSW01_03660 0.44 +1.5
749,264 + CSW01_03660 0.50 +0.3
749,285 + CSW01_03660 0.56 -2.9
749,366 + CSW01_03660 0.79 -0.5
749,397 + CSW01_03660 0.87 +0.0
749,597 + CSW01_03665 0.14 -2.1
749,655 + CSW01_03665 0.25 -3.4
749,655 + CSW01_03665 0.25 -0.0
749,734 + CSW01_03665 0.39 +0.3
749,734 + CSW01_03665 0.39 +1.8
749,744 + CSW01_03665 0.41 -2.3
749,752 - CSW01_03665 0.42 -2.4
749,799 - CSW01_03665 0.51 +0.7
749,800 - CSW01_03665 0.51 +0.2
749,826 + CSW01_03665 0.56 -0.4
749,826 + CSW01_03665 0.56 +2.0
749,833 + CSW01_03665 0.57 +0.4
749,834 - CSW01_03665 0.57 +0.6
749,836 + CSW01_03665 0.57 -2.9
749,854 + CSW01_03665 0.61 +0.8
749,873 + CSW01_03665 0.64 -0.2
749,881 - CSW01_03665 0.66 -0.0
749,904 + CSW01_03665 0.70 +1.4
749,932 + CSW01_03665 0.75 +0.8
749,935 - CSW01_03665 0.75 +0.2
749,986 - CSW01_03665 0.85 -1.3
749,986 - CSW01_03665 0.85 +1.2
749,996 - -0.7
750,025 + -0.7
750,174 - -1.0
750,330 + CSW01_03670 0.14 -0.0
750,330 + CSW01_03670 0.14 -2.1
750,330 + CSW01_03670 0.14 -2.7
750,330 + CSW01_03670 0.14 -2.4
750,338 - CSW01_03670 0.15 +1.4
750,338 - CSW01_03670 0.15 +1.0
750,365 - CSW01_03670 0.16 +0.5
750,403 - CSW01_03670 0.17 +2.4
750,470 + CSW01_03670 0.20 +2.4
750,473 - CSW01_03670 0.20 +0.3
750,574 + CSW01_03670 0.25 +0.1
750,617 - CSW01_03670 0.26 -0.7
750,676 - CSW01_03670 0.29 -0.6
750,765 - CSW01_03670 0.33 +0.0
750,782 + CSW01_03670 0.33 +0.1
750,824 - CSW01_03670 0.35 +0.0
750,986 + CSW01_03670 0.42 -1.6
750,986 + CSW01_03670 0.42 -0.1
751,066 - CSW01_03670 0.45 +0.2
751,222 + CSW01_03670 0.52 +1.0
751,257 + CSW01_03670 0.53 -2.3
751,273 - CSW01_03670 0.54 +3.6
751,304 + CSW01_03670 0.55 -0.9
751,363 - CSW01_03670 0.58 -0.2
751,446 - CSW01_03670 0.61 +0.2
751,446 - CSW01_03670 0.61 -0.1
751,455 + CSW01_03670 0.62 -0.5
751,479 - CSW01_03670 0.63 -1.3
751,480 + CSW01_03670 0.63 +1.5
751,481 + CSW01_03670 0.63 -1.5
751,488 - CSW01_03670 0.63 -0.6
751,579 - CSW01_03670 0.67 -0.8
751,603 + CSW01_03670 0.68 -0.3
751,603 + CSW01_03670 0.68 -0.4
751,611 - CSW01_03670 0.68 +0.9
751,611 - CSW01_03670 0.68 -4.1
751,638 + CSW01_03670 0.69 +0.7
751,680 + CSW01_03670 0.71 +1.0
751,688 - CSW01_03670 0.71 +0.5
751,698 + CSW01_03670 0.72 -0.3
751,706 - CSW01_03670 0.72 +0.7
751,783 + CSW01_03670 0.75 +1.2
751,897 - CSW01_03670 0.80 +0.6
751,966 - CSW01_03670 0.83 +1.8
752,102 + CSW01_03670 0.89 -0.5
752,166 - -2.2
752,182 + -0.7
752,201 - +0.8
752,257 + -2.1
752,306 + +0.3
752,314 - -0.9
752,316 + -0.7
752,488 + CSW01_03675 0.13 -0.4
752,490 + CSW01_03675 0.13 +0.5
752,490 + CSW01_03675 0.13 +1.4
752,490 + CSW01_03675 0.13 -3.4
752,490 + CSW01_03675 0.13 -2.3
752,496 - CSW01_03675 0.14 -2.2
752,498 - CSW01_03675 0.14 -0.4
752,498 - CSW01_03675 0.14 +0.2
752,498 - CSW01_03675 0.14 +1.2
752,498 - CSW01_03675 0.14 -3.5
752,599 + CSW01_03675 0.23 +1.6
752,607 - CSW01_03675 0.24 +0.7
752,635 + CSW01_03675 0.26 -0.6
752,694 - CSW01_03675 0.32 +1.1
752,694 - CSW01_03675 0.32 +0.5
752,694 - CSW01_03675 0.32 -2.1
752,729 + CSW01_03675 0.35 +0.3
752,763 + CSW01_03675 0.38 +0.1
752,767 - CSW01_03675 0.39 -1.2
752,771 - CSW01_03675 0.39 +0.8
752,782 + CSW01_03675 0.40 +1.2
752,782 + CSW01_03675 0.40 -0.2
752,782 + CSW01_03675 0.40 -1.5
752,782 + CSW01_03675 0.40 +0.3
752,790 - CSW01_03675 0.41 +0.3
752,790 - CSW01_03675 0.41 +0.3
752,805 + CSW01_03675 0.42 -0.1
752,898 - CSW01_03675 0.51 -2.1
752,902 + CSW01_03675 0.51 -2.9
752,904 + CSW01_03675 0.51 +0.4
752,912 - CSW01_03675 0.52 +0.1
752,928 - CSW01_03675 0.54 +0.3
752,929 - CSW01_03675 0.54 -2.6
752,929 - CSW01_03675 0.54 +1.0
752,949 + CSW01_03675 0.55 -1.3
753,067 - CSW01_03675 0.66 +0.9
753,194 - CSW01_03675 0.78 +0.1
753,251 - CSW01_03675 0.83 -2.9
753,361 - -3.1

Or see this region's nucleotide sequence