Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03205

Experiment: ICP3_phage_411_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03200 and CSW01_03205 are separated by 141 nucleotidesCSW01_03205 and CSW01_03210 are separated by 83 nucleotides CSW01_03200: CSW01_03200 - ammonium transporter, at 636,303 to 637,532 _03200 CSW01_03205: CSW01_03205 - iron ABC transporter substrate-binding protein, at 637,674 to 638,687 _03205 CSW01_03210: CSW01_03210 - iron ABC transporter permease, at 638,771 to 640,396 _03210 Position (kb) 637 638 639Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 636.711 kb on + strand, within CSW01_03200at 636.711 kb on + strand, within CSW01_03200at 636.711 kb on + strand, within CSW01_03200at 636.719 kb on - strand, within CSW01_03200at 636.720 kb on + strand, within CSW01_03200at 636.725 kb on + strand, within CSW01_03200at 636.733 kb on + strand, within CSW01_03200at 636.756 kb on - strand, within CSW01_03200at 636.806 kb on - strand, within CSW01_03200at 636.807 kb on - strand, within CSW01_03200at 636.852 kb on - strand, within CSW01_03200at 636.934 kb on - strand, within CSW01_03200at 636.943 kb on - strand, within CSW01_03200at 637.047 kb on - strand, within CSW01_03200at 637.072 kb on - strand, within CSW01_03200at 637.093 kb on - strand, within CSW01_03200at 637.118 kb on - strand, within CSW01_03200at 637.121 kb on + strand, within CSW01_03200at 637.122 kb on + strand, within CSW01_03200at 637.130 kb on - strand, within CSW01_03200at 637.130 kb on - strand, within CSW01_03200at 637.130 kb on - strand, within CSW01_03200at 637.142 kb on - strand, within CSW01_03200at 637.184 kb on + strand, within CSW01_03200at 637.197 kb on - strand, within CSW01_03200at 637.209 kb on + strand, within CSW01_03200at 637.209 kb on + strand, within CSW01_03200at 637.211 kb on + strand, within CSW01_03200at 637.217 kb on - strand, within CSW01_03200at 637.217 kb on - strand, within CSW01_03200at 637.217 kb on - strand, within CSW01_03200at 637.217 kb on - strand, within CSW01_03200at 637.217 kb on - strand, within CSW01_03200at 637.219 kb on + strand, within CSW01_03200at 637.261 kb on - strand, within CSW01_03200at 637.294 kb on - strand, within CSW01_03200at 637.320 kb on - strand, within CSW01_03200at 637.327 kb on - strand, within CSW01_03200at 637.331 kb on + strand, within CSW01_03200at 637.334 kb on - strand, within CSW01_03200at 637.364 kb on + strand, within CSW01_03200at 637.367 kb on - strand, within CSW01_03200at 637.367 kb on - strand, within CSW01_03200at 637.369 kb on + strand, within CSW01_03200at 637.369 kb on + strand, within CSW01_03200at 637.369 kb on + strand, within CSW01_03200at 637.382 kb on - strand, within CSW01_03200at 637.412 kb on + strandat 637.688 kb on - strandat 637.713 kb on - strandat 637.759 kb on - strandat 637.875 kb on + strand, within CSW01_03205at 637.875 kb on + strand, within CSW01_03205at 637.875 kb on + strand, within CSW01_03205at 637.875 kb on + strand, within CSW01_03205at 637.875 kb on + strand, within CSW01_03205at 637.883 kb on - strand, within CSW01_03205at 637.901 kb on - strand, within CSW01_03205at 637.914 kb on - strand, within CSW01_03205at 637.944 kb on + strand, within CSW01_03205at 637.969 kb on - strand, within CSW01_03205at 638.106 kb on - strand, within CSW01_03205at 638.116 kb on - strand, within CSW01_03205at 638.264 kb on - strand, within CSW01_03205at 638.293 kb on + strand, within CSW01_03205at 638.298 kb on + strand, within CSW01_03205at 638.306 kb on - strand, within CSW01_03205at 638.340 kb on - strand, within CSW01_03205at 638.416 kb on + strand, within CSW01_03205at 638.570 kb on - strand, within CSW01_03205at 638.574 kb on + strand, within CSW01_03205at 638.585 kb on + strand, within CSW01_03205at 638.585 kb on + strand, within CSW01_03205at 638.585 kb on + strand, within CSW01_03205at 638.585 kb on + strand, within CSW01_03205at 638.593 kb on - strandat 638.597 kb on + strandat 638.753 kb on + strandat 638.805 kb on + strandat 638.810 kb on + strandat 638.810 kb on + strandat 638.810 kb on + strandat 638.818 kb on - strandat 638.818 kb on - strandat 638.830 kb on - strandat 638.848 kb on + strandat 638.856 kb on - strandat 638.933 kb on + strandat 638.933 kb on + strandat 638.933 kb on + strandat 638.933 kb on + strandat 638.941 kb on - strand, within CSW01_03210at 638.948 kb on + strand, within CSW01_03210at 638.948 kb on + strand, within CSW01_03210at 638.948 kb on + strand, within CSW01_03210at 638.948 kb on + strand, within CSW01_03210at 638.968 kb on + strand, within CSW01_03210at 638.968 kb on - strand, within CSW01_03210at 638.977 kb on + strand, within CSW01_03210at 639.107 kb on + strand, within CSW01_03210at 639.138 kb on - strand, within CSW01_03210at 639.214 kb on + strand, within CSW01_03210at 639.241 kb on - strand, within CSW01_03210at 639.241 kb on - strand, within CSW01_03210at 639.369 kb on - strand, within CSW01_03210at 639.370 kb on - strand, within CSW01_03210at 639.405 kb on + strand, within CSW01_03210at 639.405 kb on + strand, within CSW01_03210at 639.405 kb on + strand, within CSW01_03210at 639.428 kb on + strand, within CSW01_03210at 639.436 kb on - strand, within CSW01_03210at 639.526 kb on + strand, within CSW01_03210at 639.526 kb on + strand, within CSW01_03210at 639.531 kb on + strand, within CSW01_03210at 639.534 kb on - strand, within CSW01_03210at 639.546 kb on - strand, within CSW01_03210at 639.593 kb on + strand, within CSW01_03210at 639.593 kb on - strand, within CSW01_03210at 639.632 kb on + strand, within CSW01_03210at 639.632 kb on + strand, within CSW01_03210at 639.640 kb on - strand, within CSW01_03210at 639.640 kb on - strand, within CSW01_03210

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1
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636,711 + CSW01_03200 0.33 -3.6
636,711 + CSW01_03200 0.33 +0.5
636,711 + CSW01_03200 0.33 -2.7
636,719 - CSW01_03200 0.34 -0.5
636,720 + CSW01_03200 0.34 -2.6
636,725 + CSW01_03200 0.34 -2.7
636,733 + CSW01_03200 0.35 +0.1
636,756 - CSW01_03200 0.37 -2.5
636,806 - CSW01_03200 0.41 -0.5
636,807 - CSW01_03200 0.41 -1.2
636,852 - CSW01_03200 0.45 -0.2
636,934 - CSW01_03200 0.51 +0.0
636,943 - CSW01_03200 0.52 +2.4
637,047 - CSW01_03200 0.60 +0.7
637,072 - CSW01_03200 0.63 +1.1
637,093 - CSW01_03200 0.64 -3.4
637,118 - CSW01_03200 0.66 +0.4
637,121 + CSW01_03200 0.67 +2.1
637,122 + CSW01_03200 0.67 +0.9
637,130 - CSW01_03200 0.67 -0.2
637,130 - CSW01_03200 0.67 -0.0
637,130 - CSW01_03200 0.67 -2.4
637,142 - CSW01_03200 0.68 -0.2
637,184 + CSW01_03200 0.72 -2.7
637,197 - CSW01_03200 0.73 +0.0
637,209 + CSW01_03200 0.74 +3.2
637,209 + CSW01_03200 0.74 +0.3
637,211 + CSW01_03200 0.74 +0.4
637,217 - CSW01_03200 0.74 -1.8
637,217 - CSW01_03200 0.74 -3.1
637,217 - CSW01_03200 0.74 +2.1
637,217 - CSW01_03200 0.74 +0.4
637,217 - CSW01_03200 0.74 -1.4
637,219 + CSW01_03200 0.74 -1.3
637,261 - CSW01_03200 0.78 +1.4
637,294 - CSW01_03200 0.81 -2.3
637,320 - CSW01_03200 0.83 +0.7
637,327 - CSW01_03200 0.83 -1.8
637,331 + CSW01_03200 0.84 -0.5
637,334 - CSW01_03200 0.84 +1.3
637,364 + CSW01_03200 0.86 +0.1
637,367 - CSW01_03200 0.87 +0.9
637,367 - CSW01_03200 0.87 -4.2
637,369 + CSW01_03200 0.87 +0.5
637,369 + CSW01_03200 0.87 -0.3
637,369 + CSW01_03200 0.87 -0.4
637,382 - CSW01_03200 0.88 +0.7
637,412 + -3.3
637,688 - -4.6
637,713 - -3.6
637,759 - -4.4
637,875 + CSW01_03205 0.20 -4.0
637,875 + CSW01_03205 0.20 -1.8
637,875 + CSW01_03205 0.20 -4.7
637,875 + CSW01_03205 0.20 -2.5
637,875 + CSW01_03205 0.20 -4.5
637,883 - CSW01_03205 0.21 -2.0
637,901 - CSW01_03205 0.22 -5.3
637,914 - CSW01_03205 0.24 -2.8
637,944 + CSW01_03205 0.27 -1.4
637,969 - CSW01_03205 0.29 -2.9
638,106 - CSW01_03205 0.43 -1.0
638,116 - CSW01_03205 0.44 -1.4
638,264 - CSW01_03205 0.58 -2.9
638,293 + CSW01_03205 0.61 -1.7
638,298 + CSW01_03205 0.62 -4.0
638,306 - CSW01_03205 0.62 -4.5
638,340 - CSW01_03205 0.66 -1.5
638,416 + CSW01_03205 0.73 -4.7
638,570 - CSW01_03205 0.88 -3.2
638,574 + CSW01_03205 0.89 -3.4
638,585 + CSW01_03205 0.90 -2.1
638,585 + CSW01_03205 0.90 -2.1
638,585 + CSW01_03205 0.90 -4.1
638,585 + CSW01_03205 0.90 -2.5
638,593 - -3.9
638,597 + -3.1
638,753 + +1.0
638,805 + -3.7
638,810 + -3.6
638,810 + -2.3
638,810 + -2.2
638,818 - -2.6
638,818 - -2.6
638,830 - -3.3
638,848 + -4.7
638,856 - -5.1
638,933 + -2.7
638,933 + -1.9
638,933 + -1.7
638,933 + -4.5
638,941 - CSW01_03210 0.10 -5.0
638,948 + CSW01_03210 0.11 -1.7
638,948 + CSW01_03210 0.11 -2.2
638,948 + CSW01_03210 0.11 -3.7
638,948 + CSW01_03210 0.11 -3.9
638,968 + CSW01_03210 0.12 -3.5
638,968 - CSW01_03210 0.12 -4.3
638,977 + CSW01_03210 0.13 -0.5
639,107 + CSW01_03210 0.21 -3.5
639,138 - CSW01_03210 0.23 -3.8
639,214 + CSW01_03210 0.27 -5.2
639,241 - CSW01_03210 0.29 -2.4
639,241 - CSW01_03210 0.29 -4.6
639,369 - CSW01_03210 0.37 -4.1
639,370 - CSW01_03210 0.37 -3.4
639,405 + CSW01_03210 0.39 -0.6
639,405 + CSW01_03210 0.39 -2.3
639,405 + CSW01_03210 0.39 -3.3
639,428 + CSW01_03210 0.40 -0.3
639,436 - CSW01_03210 0.41 -4.7
639,526 + CSW01_03210 0.46 -1.4
639,526 + CSW01_03210 0.46 -1.4
639,531 + CSW01_03210 0.47 -1.8
639,534 - CSW01_03210 0.47 -2.6
639,546 - CSW01_03210 0.48 -3.7
639,593 + CSW01_03210 0.51 -4.1
639,593 - CSW01_03210 0.51 -1.7
639,632 + CSW01_03210 0.53 -3.3
639,632 + CSW01_03210 0.53 -4.1
639,640 - CSW01_03210 0.53 -2.3
639,640 - CSW01_03210 0.53 -1.3

Or see this region's nucleotide sequence