Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03100

Experiment: ICP3_phage_411_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03090 and CSW01_03095 overlap by 28 nucleotidesCSW01_03095 and CSW01_03100 are separated by 55 nucleotidesCSW01_03100 and CSW01_03105 are separated by 295 nucleotidesCSW01_03105 and CSW01_03110 are separated by 74 nucleotides CSW01_03090: CSW01_03090 - rRNA (cytidine-2'-O-)-methyltransferase, at 610,227 to 611,093 _03090 CSW01_03095: CSW01_03095 - hypothetical protein, at 611,066 to 611,251 _03095 CSW01_03100: CSW01_03100 - TetR/AcrR family transcriptional regulator, at 611,307 to 611,918 _03100 CSW01_03105: CSW01_03105 - hypoxanthine phosphoribosyltransferase, at 612,214 to 612,747 _03105 CSW01_03110: CSW01_03110 - carbonate dehydratase, at 612,822 to 613,490 _03110 Position (kb) 611 612Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 610.326 kb on + strand, within CSW01_03090at 610.334 kb on - strand, within CSW01_03090at 610.334 kb on - strand, within CSW01_03090at 610.434 kb on - strand, within CSW01_03090at 610.446 kb on + strand, within CSW01_03090at 610.446 kb on + strand, within CSW01_03090at 610.447 kb on - strand, within CSW01_03090at 610.476 kb on + strand, within CSW01_03090at 610.482 kb on - strand, within CSW01_03090at 610.488 kb on + strand, within CSW01_03090at 610.502 kb on - strand, within CSW01_03090at 610.512 kb on + strand, within CSW01_03090at 610.512 kb on + strand, within CSW01_03090at 610.512 kb on + strand, within CSW01_03090at 610.512 kb on + strand, within CSW01_03090at 610.512 kb on + strand, within CSW01_03090at 610.520 kb on - strand, within CSW01_03090at 610.520 kb on - strand, within CSW01_03090at 610.520 kb on - strand, within CSW01_03090at 610.601 kb on + strand, within CSW01_03090at 610.611 kb on - strand, within CSW01_03090at 610.616 kb on - strand, within CSW01_03090at 610.624 kb on - strand, within CSW01_03090at 610.700 kb on - strand, within CSW01_03090at 610.743 kb on + strand, within CSW01_03090at 610.818 kb on - strand, within CSW01_03090at 610.828 kb on - strand, within CSW01_03090at 610.839 kb on + strand, within CSW01_03090at 610.892 kb on - strand, within CSW01_03090at 611.021 kb on - strandat 611.124 kb on + strand, within CSW01_03095at 611.163 kb on + strand, within CSW01_03095at 611.173 kb on - strand, within CSW01_03095at 611.206 kb on + strand, within CSW01_03095at 611.280 kb on + strandat 611.287 kb on + strandat 611.292 kb on + strandat 611.295 kb on - strandat 611.337 kb on - strandat 611.352 kb on + strandat 611.352 kb on + strandat 611.352 kb on + strandat 611.352 kb on + strandat 611.352 kb on + strandat 611.360 kb on - strandat 611.360 kb on - strandat 611.360 kb on - strandat 611.360 kb on - strandat 611.360 kb on - strandat 611.360 kb on - strandat 611.390 kb on - strand, within CSW01_03100at 611.401 kb on + strand, within CSW01_03100at 611.417 kb on + strand, within CSW01_03100at 611.561 kb on - strand, within CSW01_03100at 611.580 kb on - strand, within CSW01_03100at 611.587 kb on - strand, within CSW01_03100at 611.685 kb on + strand, within CSW01_03100at 611.692 kb on - strand, within CSW01_03100at 611.732 kb on + strand, within CSW01_03100at 611.751 kb on + strand, within CSW01_03100at 611.922 kb on + strandat 611.930 kb on - strandat 611.930 kb on - strandat 611.930 kb on - strandat 611.930 kb on - strandat 612.012 kb on - strandat 612.012 kb on - strandat 612.085 kb on + strandat 612.085 kb on + strandat 612.099 kb on + strandat 612.099 kb on + strandat 612.163 kb on - strandat 612.167 kb on + strandat 612.193 kb on + strandat 612.212 kb on + strandat 612.282 kb on + strand, within CSW01_03105at 612.410 kb on + strand, within CSW01_03105at 612.420 kb on + strand, within CSW01_03105at 612.437 kb on + strand, within CSW01_03105at 612.448 kb on - strand, within CSW01_03105at 612.477 kb on + strand, within CSW01_03105at 612.566 kb on + strand, within CSW01_03105at 612.575 kb on - strand, within CSW01_03105at 612.592 kb on + strand, within CSW01_03105at 612.592 kb on + strand, within CSW01_03105at 612.592 kb on + strand, within CSW01_03105at 612.592 kb on + strand, within CSW01_03105at 612.592 kb on + strand, within CSW01_03105at 612.600 kb on - strand, within CSW01_03105at 612.610 kb on - strand, within CSW01_03105at 612.711 kb on + strandat 612.726 kb on + strandat 612.727 kb on + strandat 612.793 kb on - strandat 612.795 kb on + strandat 612.803 kb on - strandat 612.803 kb on - strandat 612.810 kb on - strandat 612.869 kb on - strandat 612.892 kb on + strand, within CSW01_03110at 612.900 kb on - strand, within CSW01_03110at 612.907 kb on - strand, within CSW01_03110at 612.917 kb on - strand, within CSW01_03110

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1
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610,326 + CSW01_03090 0.11 +1.0
610,334 - CSW01_03090 0.12 +1.4
610,334 - CSW01_03090 0.12 -0.8
610,434 - CSW01_03090 0.24 +0.3
610,446 + CSW01_03090 0.25 -0.6
610,446 + CSW01_03090 0.25 -1.0
610,447 - CSW01_03090 0.25 -1.5
610,476 + CSW01_03090 0.29 +0.9
610,482 - CSW01_03090 0.29 -1.8
610,488 + CSW01_03090 0.30 +1.9
610,502 - CSW01_03090 0.32 +1.6
610,512 + CSW01_03090 0.33 +0.1
610,512 + CSW01_03090 0.33 -2.7
610,512 + CSW01_03090 0.33 -0.1
610,512 + CSW01_03090 0.33 -1.9
610,512 + CSW01_03090 0.33 +1.1
610,520 - CSW01_03090 0.34 +0.3
610,520 - CSW01_03090 0.34 -0.2
610,520 - CSW01_03090 0.34 +1.4
610,601 + CSW01_03090 0.43 -1.4
610,611 - CSW01_03090 0.44 -1.8
610,616 - CSW01_03090 0.45 +0.6
610,624 - CSW01_03090 0.46 +1.1
610,700 - CSW01_03090 0.55 +0.4
610,743 + CSW01_03090 0.60 +0.9
610,818 - CSW01_03090 0.68 +0.9
610,828 - CSW01_03090 0.69 +0.4
610,839 + CSW01_03090 0.71 -3.4
610,892 - CSW01_03090 0.77 +0.6
611,021 - +1.2
611,124 + CSW01_03095 0.31 +1.2
611,163 + CSW01_03095 0.52 +1.4
611,173 - CSW01_03095 0.58 -2.5
611,206 + CSW01_03095 0.75 +1.2
611,280 + +2.2
611,287 + +1.1
611,292 + -3.5
611,295 - -4.0
611,337 - -2.2
611,352 + -0.7
611,352 + -1.2
611,352 + -4.6
611,352 + +0.4
611,352 + -1.8
611,360 - -1.3
611,360 - -0.2
611,360 - -0.5
611,360 - -3.7
611,360 - -0.4
611,360 - +0.0
611,390 - CSW01_03100 0.14 -5.0
611,401 + CSW01_03100 0.15 -1.8
611,417 + CSW01_03100 0.18 -1.0
611,561 - CSW01_03100 0.42 -1.9
611,580 - CSW01_03100 0.45 -3.6
611,587 - CSW01_03100 0.46 -0.2
611,685 + CSW01_03100 0.62 -1.9
611,692 - CSW01_03100 0.63 -0.4
611,732 + CSW01_03100 0.69 -0.9
611,751 + CSW01_03100 0.73 +0.3
611,922 + +0.1
611,930 - +0.2
611,930 - -2.2
611,930 - -1.5
611,930 - -3.7
612,012 - +0.2
612,012 - -0.1
612,085 + +0.3
612,085 + +0.4
612,099 + -0.3
612,099 + +1.4
612,163 - -3.5
612,167 + -1.7
612,193 + -1.1
612,212 + +1.3
612,282 + CSW01_03105 0.13 +1.1
612,410 + CSW01_03105 0.37 +0.0
612,420 + CSW01_03105 0.39 +1.6
612,437 + CSW01_03105 0.42 +1.9
612,448 - CSW01_03105 0.44 +0.1
612,477 + CSW01_03105 0.49 -0.7
612,566 + CSW01_03105 0.66 -0.2
612,575 - CSW01_03105 0.68 +0.3
612,592 + CSW01_03105 0.71 -0.4
612,592 + CSW01_03105 0.71 -2.1
612,592 + CSW01_03105 0.71 +0.6
612,592 + CSW01_03105 0.71 -0.4
612,592 + CSW01_03105 0.71 +1.6
612,600 - CSW01_03105 0.72 +0.4
612,610 - CSW01_03105 0.74 +1.2
612,711 + -1.8
612,726 + -2.8
612,727 + +2.8
612,793 - +0.2
612,795 + +1.9
612,803 - -0.6
612,803 - -0.7
612,810 - -2.8
612,869 - -2.2
612,892 + CSW01_03110 0.10 -0.9
612,900 - CSW01_03110 0.12 +0.1
612,907 - CSW01_03110 0.13 +0.8
612,917 - CSW01_03110 0.14 +0.4

Or see this region's nucleotide sequence