Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02455

Experiment: ICP3_phage_411_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02445 and CSW01_02450 are separated by 53 nucleotidesCSW01_02450 and CSW01_02455 are separated by 52 nucleotidesCSW01_02455 and CSW01_02460 are separated by 25 nucleotides CSW01_02445: CSW01_02445 - hypothetical protein, at 487,818 to 488,375 _02445 CSW01_02450: CSW01_02450 - pyrroline-5-carboxylate reductase, at 488,429 to 489,247 _02450 CSW01_02455: CSW01_02455 - YggS family pyridoxal phosphate enzyme, at 489,300 to 490,010 _02455 CSW01_02460: CSW01_02460 - type IV pili twitching motility protein PilT, at 490,036 to 491,073 _02460 Position (kb) 489 490 491Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 488.324 kb on + strandat 488.324 kb on + strandat 488.332 kb on - strandat 488.506 kb on - strandat 488.509 kb on + strandat 488.516 kb on + strand, within CSW01_02450at 488.584 kb on + strand, within CSW01_02450at 488.592 kb on - strand, within CSW01_02450at 488.595 kb on + strand, within CSW01_02450at 488.595 kb on + strand, within CSW01_02450at 488.603 kb on - strand, within CSW01_02450at 488.663 kb on + strand, within CSW01_02450at 488.755 kb on - strand, within CSW01_02450at 488.777 kb on + strand, within CSW01_02450at 488.777 kb on - strand, within CSW01_02450at 488.777 kb on - strand, within CSW01_02450at 488.808 kb on - strand, within CSW01_02450at 488.813 kb on + strand, within CSW01_02450at 488.813 kb on + strand, within CSW01_02450at 488.821 kb on - strand, within CSW01_02450at 488.821 kb on - strand, within CSW01_02450at 488.821 kb on - strand, within CSW01_02450at 488.860 kb on + strand, within CSW01_02450at 488.860 kb on + strand, within CSW01_02450at 488.904 kb on + strand, within CSW01_02450at 488.904 kb on + strand, within CSW01_02450at 489.011 kb on - strand, within CSW01_02450at 489.011 kb on - strand, within CSW01_02450at 489.011 kb on - strand, within CSW01_02450at 489.026 kb on - strand, within CSW01_02450at 489.076 kb on + strand, within CSW01_02450at 489.244 kb on - strandat 489.348 kb on - strandat 489.353 kb on + strandat 489.353 kb on + strandat 489.353 kb on + strandat 489.361 kb on - strandat 489.361 kb on - strandat 489.420 kb on - strand, within CSW01_02455at 489.482 kb on + strand, within CSW01_02455at 489.487 kb on + strand, within CSW01_02455at 489.487 kb on + strand, within CSW01_02455at 489.487 kb on + strand, within CSW01_02455at 489.495 kb on - strand, within CSW01_02455at 489.495 kb on - strand, within CSW01_02455at 489.536 kb on + strand, within CSW01_02455at 489.544 kb on - strand, within CSW01_02455at 489.616 kb on + strand, within CSW01_02455at 489.616 kb on + strand, within CSW01_02455at 489.660 kb on + strand, within CSW01_02455at 489.695 kb on + strand, within CSW01_02455at 489.752 kb on + strand, within CSW01_02455at 489.782 kb on - strand, within CSW01_02455at 489.782 kb on - strand, within CSW01_02455at 489.782 kb on - strand, within CSW01_02455at 489.821 kb on - strand, within CSW01_02455at 489.826 kb on + strand, within CSW01_02455at 489.835 kb on + strand, within CSW01_02455at 489.855 kb on + strand, within CSW01_02455at 489.926 kb on - strand, within CSW01_02455at 489.948 kb on + strandat 489.969 kb on - strandat 489.971 kb on + strandat 490.003 kb on - strandat 490.064 kb on + strandat 490.072 kb on - strandat 490.084 kb on + strandat 490.084 kb on + strandat 490.084 kb on + strandat 490.084 kb on + strandat 490.135 kb on + strandat 490.135 kb on + strandat 490.179 kb on - strand, within CSW01_02460at 490.210 kb on - strand, within CSW01_02460at 490.215 kb on - strand, within CSW01_02460at 490.215 kb on - strand, within CSW01_02460at 490.220 kb on - strand, within CSW01_02460at 490.260 kb on + strand, within CSW01_02460at 490.260 kb on + strand, within CSW01_02460at 490.260 kb on + strand, within CSW01_02460at 490.260 kb on + strand, within CSW01_02460at 490.260 kb on + strand, within CSW01_02460at 490.260 kb on + strand, within CSW01_02460at 490.268 kb on - strand, within CSW01_02460at 490.268 kb on - strand, within CSW01_02460at 490.268 kb on - strand, within CSW01_02460at 490.268 kb on - strand, within CSW01_02460at 490.320 kb on + strand, within CSW01_02460at 490.367 kb on + strand, within CSW01_02460at 490.443 kb on + strand, within CSW01_02460at 490.491 kb on - strand, within CSW01_02460at 490.621 kb on + strand, within CSW01_02460at 490.672 kb on - strand, within CSW01_02460at 490.717 kb on + strand, within CSW01_02460at 490.717 kb on + strand, within CSW01_02460at 490.717 kb on + strand, within CSW01_02460at 490.725 kb on - strand, within CSW01_02460at 490.725 kb on - strand, within CSW01_02460at 490.735 kb on - strand, within CSW01_02460at 490.930 kb on + strand, within CSW01_02460at 490.930 kb on + strand, within CSW01_02460at 490.958 kb on + strand, within CSW01_02460

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1
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488,324 + -3.7
488,324 + +1.8
488,332 - -1.0
488,506 - -3.9
488,509 + -1.0
488,516 + CSW01_02450 0.11 -0.5
488,584 + CSW01_02450 0.19 -2.1
488,592 - CSW01_02450 0.20 -2.1
488,595 + CSW01_02450 0.20 -2.6
488,595 + CSW01_02450 0.20 -2.6
488,603 - CSW01_02450 0.21 -0.6
488,663 + CSW01_02450 0.29 -3.5
488,755 - CSW01_02450 0.40 -1.2
488,777 + CSW01_02450 0.42 -2.1
488,777 - CSW01_02450 0.42 -1.6
488,777 - CSW01_02450 0.42 -1.8
488,808 - CSW01_02450 0.46 -3.5
488,813 + CSW01_02450 0.47 -0.3
488,813 + CSW01_02450 0.47 -2.6
488,821 - CSW01_02450 0.48 -2.4
488,821 - CSW01_02450 0.48 -0.3
488,821 - CSW01_02450 0.48 -1.1
488,860 + CSW01_02450 0.53 -1.9
488,860 + CSW01_02450 0.53 -0.1
488,904 + CSW01_02450 0.58 -0.4
488,904 + CSW01_02450 0.58 -0.7
489,011 - CSW01_02450 0.71 -0.5
489,011 - CSW01_02450 0.71 -2.6
489,011 - CSW01_02450 0.71 -3.3
489,026 - CSW01_02450 0.73 -1.1
489,076 + CSW01_02450 0.79 -0.7
489,244 - -0.6
489,348 - -1.7
489,353 + -4.2
489,353 + -1.9
489,353 + +0.2
489,361 - -2.0
489,361 - -1.3
489,420 - CSW01_02455 0.17 -1.3
489,482 + CSW01_02455 0.26 -1.3
489,487 + CSW01_02455 0.26 -2.5
489,487 + CSW01_02455 0.26 -1.7
489,487 + CSW01_02455 0.26 -0.9
489,495 - CSW01_02455 0.27 -2.1
489,495 - CSW01_02455 0.27 -1.8
489,536 + CSW01_02455 0.33 +0.1
489,544 - CSW01_02455 0.34 -1.1
489,616 + CSW01_02455 0.44 -1.6
489,616 + CSW01_02455 0.44 -1.7
489,660 + CSW01_02455 0.51 +0.5
489,695 + CSW01_02455 0.56 +1.4
489,752 + CSW01_02455 0.64 -2.5
489,782 - CSW01_02455 0.68 +1.7
489,782 - CSW01_02455 0.68 +0.4
489,782 - CSW01_02455 0.68 -0.4
489,821 - CSW01_02455 0.73 -2.3
489,826 + CSW01_02455 0.74 -2.1
489,835 + CSW01_02455 0.75 -2.7
489,855 + CSW01_02455 0.78 -0.6
489,926 - CSW01_02455 0.88 -2.3
489,948 + +1.4
489,969 - +0.8
489,971 + -0.5
490,003 - +1.5
490,064 + -2.2
490,072 - +0.3
490,084 + -2.5
490,084 + +1.2
490,084 + +0.5
490,084 + +1.0
490,135 + -3.1
490,135 + -0.1
490,179 - CSW01_02460 0.14 -0.5
490,210 - CSW01_02460 0.17 +1.5
490,215 - CSW01_02460 0.17 +1.3
490,215 - CSW01_02460 0.17 -1.5
490,220 - CSW01_02460 0.18 +0.2
490,260 + CSW01_02460 0.22 +0.4
490,260 + CSW01_02460 0.22 -0.1
490,260 + CSW01_02460 0.22 +0.4
490,260 + CSW01_02460 0.22 -2.3
490,260 + CSW01_02460 0.22 -1.0
490,260 + CSW01_02460 0.22 +0.9
490,268 - CSW01_02460 0.22 +0.1
490,268 - CSW01_02460 0.22 -0.8
490,268 - CSW01_02460 0.22 -1.7
490,268 - CSW01_02460 0.22 +0.2
490,320 + CSW01_02460 0.27 -1.5
490,367 + CSW01_02460 0.32 -0.8
490,443 + CSW01_02460 0.39 -2.6
490,491 - CSW01_02460 0.44 -0.5
490,621 + CSW01_02460 0.56 -0.6
490,672 - CSW01_02460 0.61 +0.8
490,717 + CSW01_02460 0.66 -0.8
490,717 + CSW01_02460 0.66 -0.2
490,717 + CSW01_02460 0.66 +2.0
490,725 - CSW01_02460 0.66 +1.5
490,725 - CSW01_02460 0.66 +0.1
490,735 - CSW01_02460 0.67 -0.4
490,930 + CSW01_02460 0.86 -1.6
490,930 + CSW01_02460 0.86 +1.5
490,958 + CSW01_02460 0.89 -0.3

Or see this region's nucleotide sequence