Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02320

Experiment: ICP3_phage_411_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02310 and CSW01_02315 are separated by 148 nucleotidesCSW01_02315 and CSW01_02320 are separated by 10 nucleotidesCSW01_02320 and CSW01_02325 are separated by 71 nucleotidesCSW01_02325 and CSW01_02330 are separated by 13 nucleotides CSW01_02310: CSW01_02310 - type 3 dihydrofolate reductase, at 468,546 to 469,043 _02310 CSW01_02315: CSW01_02315 - bis(5'-nucleosyl)-tetraphosphatase (symmetrical), at 469,192 to 470,001 _02315 CSW01_02320: CSW01_02320 - Co2+/Mg2+ efflux protein ApaG, at 470,012 to 470,392 _02320 CSW01_02325: CSW01_02325 - ribosomal RNA small subunit methyltransferase A, at 470,464 to 471,279 _02325 CSW01_02330: CSW01_02330 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 471,293 to 472,285 _02330 Position (kb) 470 471Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 469.232 kb on + strandat 469.237 kb on + strandat 469.272 kb on - strandat 469.300 kb on + strand, within CSW01_02315at 469.393 kb on - strand, within CSW01_02315at 469.473 kb on - strand, within CSW01_02315at 469.502 kb on - strand, within CSW01_02315at 469.503 kb on + strand, within CSW01_02315at 469.528 kb on + strand, within CSW01_02315at 469.528 kb on + strand, within CSW01_02315at 469.536 kb on - strand, within CSW01_02315at 469.538 kb on + strand, within CSW01_02315at 469.538 kb on + strand, within CSW01_02315at 469.538 kb on + strand, within CSW01_02315at 469.538 kb on + strand, within CSW01_02315at 469.538 kb on + strand, within CSW01_02315at 469.538 kb on + strand, within CSW01_02315at 469.538 kb on + strand, within CSW01_02315at 469.538 kb on + strand, within CSW01_02315at 469.538 kb on + strand, within CSW01_02315at 469.538 kb on + strand, within CSW01_02315at 469.546 kb on - strand, within CSW01_02315at 469.546 kb on - strand, within CSW01_02315at 469.546 kb on - strand, within CSW01_02315at 469.546 kb on - strand, within CSW01_02315at 469.546 kb on - strand, within CSW01_02315at 469.546 kb on - strand, within CSW01_02315at 469.546 kb on - strand, within CSW01_02315at 469.546 kb on - strand, within CSW01_02315at 469.551 kb on + strand, within CSW01_02315at 469.566 kb on + strand, within CSW01_02315at 469.576 kb on + strand, within CSW01_02315at 469.581 kb on + strand, within CSW01_02315at 469.589 kb on - strand, within CSW01_02315at 469.594 kb on + strand, within CSW01_02315at 469.654 kb on - strand, within CSW01_02315at 469.656 kb on + strand, within CSW01_02315at 469.659 kb on - strand, within CSW01_02315at 469.671 kb on - strand, within CSW01_02315at 469.687 kb on + strand, within CSW01_02315at 469.758 kb on + strand, within CSW01_02315at 469.766 kb on - strand, within CSW01_02315at 469.797 kb on - strand, within CSW01_02315at 469.842 kb on - strand, within CSW01_02315at 469.910 kb on + strand, within CSW01_02315at 469.977 kb on - strandat 469.977 kb on - strandat 470.112 kb on - strand, within CSW01_02320at 470.123 kb on + strand, within CSW01_02320at 470.123 kb on + strand, within CSW01_02320at 470.123 kb on + strand, within CSW01_02320at 470.123 kb on + strand, within CSW01_02320at 470.123 kb on + strand, within CSW01_02320at 470.131 kb on - strand, within CSW01_02320at 470.131 kb on - strand, within CSW01_02320at 470.131 kb on - strand, within CSW01_02320at 470.149 kb on - strand, within CSW01_02320at 470.299 kb on - strand, within CSW01_02320at 470.300 kb on + strand, within CSW01_02320at 470.414 kb on - strandat 470.414 kb on - strandat 470.495 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1
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469,232 + +0.3
469,237 + -2.1
469,272 - +0.9
469,300 + CSW01_02315 0.13 -0.6
469,393 - CSW01_02315 0.25 +1.3
469,473 - CSW01_02315 0.35 -0.0
469,502 - CSW01_02315 0.38 -0.9
469,503 + CSW01_02315 0.38 +1.7
469,528 + CSW01_02315 0.41 -1.3
469,528 + CSW01_02315 0.41 -0.0
469,536 - CSW01_02315 0.42 -2.1
469,538 + CSW01_02315 0.43 -1.8
469,538 + CSW01_02315 0.43 +1.8
469,538 + CSW01_02315 0.43 -1.9
469,538 + CSW01_02315 0.43 -0.3
469,538 + CSW01_02315 0.43 -2.2
469,538 + CSW01_02315 0.43 -3.1
469,538 + CSW01_02315 0.43 -1.8
469,538 + CSW01_02315 0.43 -2.3
469,538 + CSW01_02315 0.43 -0.9
469,538 + CSW01_02315 0.43 +0.5
469,546 - CSW01_02315 0.44 -0.0
469,546 - CSW01_02315 0.44 -0.1
469,546 - CSW01_02315 0.44 +0.1
469,546 - CSW01_02315 0.44 -0.0
469,546 - CSW01_02315 0.44 -1.4
469,546 - CSW01_02315 0.44 +1.8
469,546 - CSW01_02315 0.44 +0.0
469,546 - CSW01_02315 0.44 +1.0
469,551 + CSW01_02315 0.44 -0.2
469,566 + CSW01_02315 0.46 -0.2
469,576 + CSW01_02315 0.47 +0.9
469,581 + CSW01_02315 0.48 +0.4
469,589 - CSW01_02315 0.49 +0.7
469,594 + CSW01_02315 0.50 -2.4
469,654 - CSW01_02315 0.57 -4.3
469,656 + CSW01_02315 0.57 -2.4
469,659 - CSW01_02315 0.58 -2.8
469,671 - CSW01_02315 0.59 +1.2
469,687 + CSW01_02315 0.61 +0.1
469,758 + CSW01_02315 0.70 -0.3
469,766 - CSW01_02315 0.71 +1.0
469,797 - CSW01_02315 0.75 -0.9
469,842 - CSW01_02315 0.80 -1.9
469,910 + CSW01_02315 0.89 +0.6
469,977 - -1.2
469,977 - +1.5
470,112 - CSW01_02320 0.26 -2.4
470,123 + CSW01_02320 0.29 +1.0
470,123 + CSW01_02320 0.29 -2.2
470,123 + CSW01_02320 0.29 +0.2
470,123 + CSW01_02320 0.29 -2.1
470,123 + CSW01_02320 0.29 +1.5
470,131 - CSW01_02320 0.31 +0.1
470,131 - CSW01_02320 0.31 -0.3
470,131 - CSW01_02320 0.31 -0.9
470,149 - CSW01_02320 0.36 -1.3
470,299 - CSW01_02320 0.75 -0.9
470,300 + CSW01_02320 0.76 -1.3
470,414 - -3.0
470,414 - +0.4
470,495 - -3.5

Or see this region's nucleotide sequence