Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02215

Experiment: ICP3_phage_411_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02210 and CSW01_02215 are separated by 8 nucleotidesCSW01_02215 and CSW01_02220 overlap by 1 nucleotides CSW01_02210: CSW01_02210 - DUF3971 domain-containing protein, at 445,429 to 449,304 _02210 CSW01_02215: CSW01_02215 - carbon-nitrogen hydrolase family protein, at 449,313 to 450,140 _02215 CSW01_02220: CSW01_02220 - metalloprotease TldD, at 450,140 to 451,585 _02220 Position (kb) 449 450 451Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 448.318 kb on - strand, within CSW01_02210at 448.331 kb on + strand, within CSW01_02210at 448.368 kb on + strand, within CSW01_02210at 448.368 kb on + strand, within CSW01_02210at 448.465 kb on + strand, within CSW01_02210at 448.474 kb on - strand, within CSW01_02210at 448.552 kb on - strand, within CSW01_02210at 448.573 kb on - strand, within CSW01_02210at 448.708 kb on + strand, within CSW01_02210at 448.709 kb on - strand, within CSW01_02210at 448.776 kb on + strand, within CSW01_02210at 448.776 kb on + strand, within CSW01_02210at 448.776 kb on + strand, within CSW01_02210at 448.784 kb on - strand, within CSW01_02210at 448.791 kb on + strand, within CSW01_02210at 448.826 kb on + strand, within CSW01_02210at 448.871 kb on - strand, within CSW01_02210at 448.962 kb on - strandat 449.068 kb on - strandat 449.156 kb on + strandat 449.174 kb on - strandat 449.320 kb on + strandat 449.320 kb on + strandat 449.390 kb on + strandat 449.395 kb on + strandat 449.502 kb on + strand, within CSW01_02215at 449.510 kb on - strand, within CSW01_02215at 449.510 kb on - strand, within CSW01_02215at 449.510 kb on - strand, within CSW01_02215at 449.510 kb on - strand, within CSW01_02215at 449.546 kb on - strand, within CSW01_02215at 449.586 kb on - strand, within CSW01_02215at 449.598 kb on + strand, within CSW01_02215at 449.609 kb on - strand, within CSW01_02215at 449.609 kb on - strand, within CSW01_02215at 449.611 kb on - strand, within CSW01_02215at 449.646 kb on + strand, within CSW01_02215at 449.662 kb on - strand, within CSW01_02215at 449.678 kb on + strand, within CSW01_02215at 449.704 kb on + strand, within CSW01_02215at 449.704 kb on + strand, within CSW01_02215at 449.704 kb on + strand, within CSW01_02215at 449.704 kb on + strand, within CSW01_02215at 449.704 kb on + strand, within CSW01_02215at 449.704 kb on + strand, within CSW01_02215at 449.712 kb on - strand, within CSW01_02215at 449.712 kb on - strand, within CSW01_02215at 449.712 kb on - strand, within CSW01_02215at 449.721 kb on + strand, within CSW01_02215at 449.724 kb on - strand, within CSW01_02215at 449.734 kb on + strand, within CSW01_02215at 449.734 kb on + strand, within CSW01_02215at 449.734 kb on + strand, within CSW01_02215at 449.734 kb on + strand, within CSW01_02215at 449.742 kb on - strand, within CSW01_02215at 449.742 kb on - strand, within CSW01_02215at 449.744 kb on + strand, within CSW01_02215at 449.770 kb on + strand, within CSW01_02215at 449.802 kb on + strand, within CSW01_02215at 449.802 kb on + strand, within CSW01_02215at 449.802 kb on + strand, within CSW01_02215at 449.810 kb on + strand, within CSW01_02215at 449.810 kb on - strand, within CSW01_02215at 449.833 kb on - strand, within CSW01_02215at 449.862 kb on + strand, within CSW01_02215at 449.862 kb on + strand, within CSW01_02215at 449.862 kb on + strand, within CSW01_02215at 449.888 kb on - strand, within CSW01_02215at 449.907 kb on + strand, within CSW01_02215at 450.035 kb on - strand, within CSW01_02215at 450.096 kb on - strandat 450.147 kb on - strandat 450.172 kb on - strandat 450.196 kb on + strandat 450.199 kb on - strandat 450.199 kb on - strandat 450.204 kb on - strandat 450.222 kb on - strandat 450.402 kb on + strand, within CSW01_02220at 450.402 kb on + strand, within CSW01_02220at 450.402 kb on + strand, within CSW01_02220at 450.402 kb on + strand, within CSW01_02220at 450.402 kb on + strand, within CSW01_02220at 450.410 kb on - strand, within CSW01_02220at 450.410 kb on - strand, within CSW01_02220at 450.410 kb on - strand, within CSW01_02220at 450.410 kb on - strand, within CSW01_02220at 450.410 kb on - strand, within CSW01_02220at 450.410 kb on - strand, within CSW01_02220at 450.410 kb on - strand, within CSW01_02220at 450.410 kb on - strand, within CSW01_02220at 450.410 kb on - strand, within CSW01_02220at 450.420 kb on - strand, within CSW01_02220at 450.446 kb on + strand, within CSW01_02220at 450.469 kb on - strand, within CSW01_02220at 450.469 kb on - strand, within CSW01_02220at 450.493 kb on + strand, within CSW01_02220at 450.594 kb on + strand, within CSW01_02220at 450.621 kb on - strand, within CSW01_02220at 450.666 kb on - strand, within CSW01_02220at 450.668 kb on + strand, within CSW01_02220at 450.858 kb on - strand, within CSW01_02220at 450.936 kb on - strand, within CSW01_02220at 451.018 kb on + strand, within CSW01_02220at 451.026 kb on - strand, within CSW01_02220at 451.042 kb on + strand, within CSW01_02220at 451.062 kb on + strand, within CSW01_02220at 451.064 kb on + strand, within CSW01_02220at 451.099 kb on - strand, within CSW01_02220at 451.130 kb on + strand, within CSW01_02220at 451.138 kb on - strand, within CSW01_02220

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1
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448,318 - CSW01_02210 0.75 +0.1
448,331 + CSW01_02210 0.75 -3.0
448,368 + CSW01_02210 0.76 -1.1
448,368 + CSW01_02210 0.76 +0.2
448,465 + CSW01_02210 0.78 -0.0
448,474 - CSW01_02210 0.79 -2.8
448,552 - CSW01_02210 0.81 +0.2
448,573 - CSW01_02210 0.81 -2.4
448,708 + CSW01_02210 0.85 -0.0
448,709 - CSW01_02210 0.85 -0.7
448,776 + CSW01_02210 0.86 -0.2
448,776 + CSW01_02210 0.86 -4.2
448,776 + CSW01_02210 0.86 -2.3
448,784 - CSW01_02210 0.87 +2.8
448,791 + CSW01_02210 0.87 -3.6
448,826 + CSW01_02210 0.88 +0.1
448,871 - CSW01_02210 0.89 -2.4
448,962 - +0.5
449,068 - -2.2
449,156 + -3.2
449,174 - -0.5
449,320 + -0.5
449,320 + +0.7
449,390 + +1.3
449,395 + -0.5
449,502 + CSW01_02215 0.23 +0.6
449,510 - CSW01_02215 0.24 -2.7
449,510 - CSW01_02215 0.24 -3.3
449,510 - CSW01_02215 0.24 +1.1
449,510 - CSW01_02215 0.24 -1.8
449,546 - CSW01_02215 0.28 -1.9
449,586 - CSW01_02215 0.33 -1.5
449,598 + CSW01_02215 0.34 -2.2
449,609 - CSW01_02215 0.36 -0.7
449,609 - CSW01_02215 0.36 +0.8
449,611 - CSW01_02215 0.36 -4.5
449,646 + CSW01_02215 0.40 +0.3
449,662 - CSW01_02215 0.42 -2.6
449,678 + CSW01_02215 0.44 +3.5
449,704 + CSW01_02215 0.47 +1.6
449,704 + CSW01_02215 0.47 +0.9
449,704 + CSW01_02215 0.47 -2.0
449,704 + CSW01_02215 0.47 -2.6
449,704 + CSW01_02215 0.47 -0.1
449,704 + CSW01_02215 0.47 -1.1
449,712 - CSW01_02215 0.48 +0.7
449,712 - CSW01_02215 0.48 -1.5
449,712 - CSW01_02215 0.48 -3.2
449,721 + CSW01_02215 0.49 +0.5
449,724 - CSW01_02215 0.50 +0.2
449,734 + CSW01_02215 0.51 +0.2
449,734 + CSW01_02215 0.51 +0.7
449,734 + CSW01_02215 0.51 -2.8
449,734 + CSW01_02215 0.51 -0.3
449,742 - CSW01_02215 0.52 -3.4
449,742 - CSW01_02215 0.52 +1.4
449,744 + CSW01_02215 0.52 -1.8
449,770 + CSW01_02215 0.55 -0.2
449,802 + CSW01_02215 0.59 -0.6
449,802 + CSW01_02215 0.59 -0.5
449,802 + CSW01_02215 0.59 -0.1
449,810 + CSW01_02215 0.60 +0.6
449,810 - CSW01_02215 0.60 -1.5
449,833 - CSW01_02215 0.63 -2.5
449,862 + CSW01_02215 0.66 +0.0
449,862 + CSW01_02215 0.66 -0.7
449,862 + CSW01_02215 0.66 -4.6
449,888 - CSW01_02215 0.69 +0.7
449,907 + CSW01_02215 0.72 +0.3
450,035 - CSW01_02215 0.87 -0.1
450,096 - -0.4
450,147 - -1.1
450,172 - -3.4
450,196 + -0.6
450,199 - -0.1
450,199 - -0.8
450,204 - -0.0
450,222 - -1.3
450,402 + CSW01_02220 0.18 -2.7
450,402 + CSW01_02220 0.18 +0.7
450,402 + CSW01_02220 0.18 +0.4
450,402 + CSW01_02220 0.18 +1.5
450,402 + CSW01_02220 0.18 +0.6
450,410 - CSW01_02220 0.19 -2.8
450,410 - CSW01_02220 0.19 -0.1
450,410 - CSW01_02220 0.19 -3.1
450,410 - CSW01_02220 0.19 +0.4
450,410 - CSW01_02220 0.19 -1.8
450,410 - CSW01_02220 0.19 +1.2
450,410 - CSW01_02220 0.19 +0.6
450,410 - CSW01_02220 0.19 -0.3
450,410 - CSW01_02220 0.19 +0.7
450,420 - CSW01_02220 0.19 +0.9
450,446 + CSW01_02220 0.21 -2.4
450,469 - CSW01_02220 0.23 +1.1
450,469 - CSW01_02220 0.23 -3.4
450,493 + CSW01_02220 0.24 +1.2
450,594 + CSW01_02220 0.31 -3.5
450,621 - CSW01_02220 0.33 -4.0
450,666 - CSW01_02220 0.36 +0.8
450,668 + CSW01_02220 0.37 +1.4
450,858 - CSW01_02220 0.50 -3.5
450,936 - CSW01_02220 0.55 +2.3
451,018 + CSW01_02220 0.61 +1.3
451,026 - CSW01_02220 0.61 -0.8
451,042 + CSW01_02220 0.62 -0.5
451,062 + CSW01_02220 0.64 -0.3
451,064 + CSW01_02220 0.64 -1.0
451,099 - CSW01_02220 0.66 -2.3
451,130 + CSW01_02220 0.68 -0.6
451,138 - CSW01_02220 0.69 -0.5

Or see this region's nucleotide sequence