Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02205

Experiment: ICP3_phage_411_MOI_rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_02195 and CSW01_02200 overlap by 58 nucleotidesCSW01_02200 and CSW01_02205 are separated by 25 nucleotidesCSW01_02205 and CSW01_02210 are separated by 12 nucleotides CSW01_02195: CSW01_02195 - rod shape-determining protein MreD, at 442,873 to 443,361 _02195 CSW01_02200: CSW01_02200 - septum formation inhibitor Maf, at 443,304 to 443,921 _02200 CSW01_02205: CSW01_02205 - ribonuclease E/G, at 443,947 to 445,416 _02205 CSW01_02210: CSW01_02210 - DUF3971 domain-containing protein, at 445,429 to 449,304 _02210 Position (kb) 443 444 445 446Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 443.400 kb on - strand, within CSW01_02200at 443.400 kb on - strand, within CSW01_02200at 443.409 kb on - strand, within CSW01_02200at 443.520 kb on + strand, within CSW01_02200at 443.528 kb on - strand, within CSW01_02200at 443.528 kb on - strand, within CSW01_02200at 443.535 kb on + strand, within CSW01_02200at 443.666 kb on - strand, within CSW01_02200at 443.670 kb on + strand, within CSW01_02200at 443.678 kb on - strand, within CSW01_02200at 443.692 kb on - strand, within CSW01_02200at 443.721 kb on - strand, within CSW01_02200at 443.733 kb on - strand, within CSW01_02200at 443.733 kb on - strand, within CSW01_02200at 443.738 kb on + strand, within CSW01_02200at 443.740 kb on - strand, within CSW01_02200at 443.782 kb on + strand, within CSW01_02200at 443.782 kb on + strand, within CSW01_02200at 443.782 kb on + strand, within CSW01_02200at 443.782 kb on + strand, within CSW01_02200at 443.784 kb on + strand, within CSW01_02200at 443.790 kb on - strand, within CSW01_02200at 443.790 kb on - strand, within CSW01_02200at 443.830 kb on - strand, within CSW01_02200at 443.888 kb on + strandat 443.946 kb on + strandat 443.951 kb on + strandat 443.951 kb on + strandat 443.954 kb on - strandat 444.084 kb on - strandat 444.194 kb on + strand, within CSW01_02205at 444.242 kb on - strand, within CSW01_02205at 444.244 kb on + strand, within CSW01_02205at 444.244 kb on + strand, within CSW01_02205at 444.244 kb on + strand, within CSW01_02205at 444.244 kb on + strand, within CSW01_02205at 444.252 kb on - strand, within CSW01_02205at 444.292 kb on - strand, within CSW01_02205at 444.292 kb on - strand, within CSW01_02205at 444.358 kb on - strand, within CSW01_02205at 444.558 kb on + strand, within CSW01_02205at 444.563 kb on + strand, within CSW01_02205at 444.563 kb on + strand, within CSW01_02205at 444.568 kb on + strand, within CSW01_02205at 444.571 kb on - strand, within CSW01_02205at 444.571 kb on - strand, within CSW01_02205at 444.576 kb on - strand, within CSW01_02205at 444.576 kb on - strand, within CSW01_02205at 444.669 kb on + strand, within CSW01_02205at 444.676 kb on + strand, within CSW01_02205at 444.686 kb on - strand, within CSW01_02205at 444.713 kb on + strand, within CSW01_02205at 444.721 kb on - strand, within CSW01_02205at 444.721 kb on - strand, within CSW01_02205at 444.834 kb on + strand, within CSW01_02205at 444.842 kb on - strand, within CSW01_02205at 444.928 kb on + strand, within CSW01_02205at 444.928 kb on + strand, within CSW01_02205at 444.928 kb on + strand, within CSW01_02205at 444.928 kb on + strand, within CSW01_02205at 444.936 kb on - strand, within CSW01_02205at 445.024 kb on + strand, within CSW01_02205at 445.032 kb on - strand, within CSW01_02205at 445.090 kb on - strand, within CSW01_02205at 445.092 kb on + strand, within CSW01_02205at 445.097 kb on + strand, within CSW01_02205at 445.121 kb on - strand, within CSW01_02205at 445.147 kb on - strand, within CSW01_02205at 445.149 kb on + strand, within CSW01_02205at 445.155 kb on + strand, within CSW01_02205at 445.174 kb on + strand, within CSW01_02205at 445.185 kb on + strand, within CSW01_02205at 445.298 kb on - strandat 445.306 kb on + strandat 445.314 kb on - strandat 445.347 kb on - strandat 445.456 kb on - strandat 445.496 kb on - strandat 445.497 kb on + strandat 445.497 kb on + strandat 445.497 kb on + strandat 445.497 kb on + strandat 445.505 kb on - strandat 445.505 kb on - strandat 445.505 kb on - strandat 445.505 kb on - strandat 445.508 kb on + strandat 445.508 kb on + strandat 445.514 kb on - strandat 445.516 kb on - strandat 445.516 kb on - strandat 445.558 kb on + strandat 445.638 kb on - strandat 445.685 kb on - strandat 445.782 kb on - strandat 445.904 kb on + strand, within CSW01_02210at 445.996 kb on + strand, within CSW01_02210at 446.004 kb on - strand, within CSW01_02210at 446.004 kb on - strand, within CSW01_02210at 446.004 kb on - strand, within CSW01_02210at 446.027 kb on + strand, within CSW01_02210at 446.027 kb on + strand, within CSW01_02210at 446.027 kb on + strand, within CSW01_02210at 446.035 kb on - strand, within CSW01_02210at 446.035 kb on - strand, within CSW01_02210at 446.035 kb on - strand, within CSW01_02210at 446.035 kb on - strand, within CSW01_02210at 446.063 kb on + strand, within CSW01_02210at 446.064 kb on + strand, within CSW01_02210at 446.071 kb on - strand, within CSW01_02210at 446.155 kb on - strand, within CSW01_02210at 446.216 kb on + strand, within CSW01_02210at 446.224 kb on - strand, within CSW01_02210at 446.224 kb on - strand, within CSW01_02210at 446.294 kb on + strand, within CSW01_02210at 446.294 kb on + strand, within CSW01_02210at 446.294 kb on + strand, within CSW01_02210at 446.294 kb on + strand, within CSW01_02210at 446.302 kb on - strand, within CSW01_02210at 446.302 kb on - strand, within CSW01_02210at 446.364 kb on - strand, within CSW01_02210at 446.384 kb on + strand, within CSW01_02210

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1
remove
443,400 - CSW01_02200 0.16 -1.2
443,400 - CSW01_02200 0.16 -1.1
443,409 - CSW01_02200 0.17 -0.4
443,520 + CSW01_02200 0.35 -1.9
443,528 - CSW01_02200 0.36 +0.5
443,528 - CSW01_02200 0.36 -2.3
443,535 + CSW01_02200 0.37 -3.7
443,666 - CSW01_02200 0.59 -0.6
443,670 + CSW01_02200 0.59 -2.4
443,678 - CSW01_02200 0.61 -1.3
443,692 - CSW01_02200 0.63 -1.2
443,721 - CSW01_02200 0.67 -1.3
443,733 - CSW01_02200 0.69 -0.6
443,733 - CSW01_02200 0.69 -2.9
443,738 + CSW01_02200 0.70 +0.1
443,740 - CSW01_02200 0.71 -0.3
443,782 + CSW01_02200 0.77 +0.9
443,782 + CSW01_02200 0.77 -2.7
443,782 + CSW01_02200 0.77 +0.9
443,782 + CSW01_02200 0.77 +1.2
443,784 + CSW01_02200 0.78 -0.3
443,790 - CSW01_02200 0.79 -3.7
443,790 - CSW01_02200 0.79 -0.2
443,830 - CSW01_02200 0.85 -2.7
443,888 + -1.9
443,946 + +0.5
443,951 + +0.9
443,951 + -0.6
443,954 - -0.7
444,084 - -1.2
444,194 + CSW01_02205 0.17 +0.9
444,242 - CSW01_02205 0.20 +1.3
444,244 + CSW01_02205 0.20 -2.7
444,244 + CSW01_02205 0.20 -0.1
444,244 + CSW01_02205 0.20 +0.6
444,244 + CSW01_02205 0.20 +0.3
444,252 - CSW01_02205 0.21 -3.0
444,292 - CSW01_02205 0.23 -0.8
444,292 - CSW01_02205 0.23 +0.0
444,358 - CSW01_02205 0.28 +0.3
444,558 + CSW01_02205 0.42 -2.7
444,563 + CSW01_02205 0.42 +1.1
444,563 + CSW01_02205 0.42 -0.2
444,568 + CSW01_02205 0.42 +0.1
444,571 - CSW01_02205 0.42 -3.4
444,571 - CSW01_02205 0.42 -0.3
444,576 - CSW01_02205 0.43 -0.4
444,576 - CSW01_02205 0.43 -2.8
444,669 + CSW01_02205 0.49 +0.1
444,676 + CSW01_02205 0.50 +0.4
444,686 - CSW01_02205 0.50 +1.1
444,713 + CSW01_02205 0.52 +1.2
444,721 - CSW01_02205 0.53 -1.4
444,721 - CSW01_02205 0.53 -4.2
444,834 + CSW01_02205 0.60 -0.0
444,842 - CSW01_02205 0.61 +0.4
444,928 + CSW01_02205 0.67 -0.7
444,928 + CSW01_02205 0.67 -0.8
444,928 + CSW01_02205 0.67 -3.0
444,928 + CSW01_02205 0.67 -2.5
444,936 - CSW01_02205 0.67 -0.9
445,024 + CSW01_02205 0.73 -3.8
445,032 - CSW01_02205 0.74 +0.8
445,090 - CSW01_02205 0.78 -1.4
445,092 + CSW01_02205 0.78 -2.2
445,097 + CSW01_02205 0.78 -2.4
445,121 - CSW01_02205 0.80 -2.4
445,147 - CSW01_02205 0.82 +0.6
445,149 + CSW01_02205 0.82 -1.0
445,155 + CSW01_02205 0.82 -2.1
445,174 + CSW01_02205 0.83 +1.2
445,185 + CSW01_02205 0.84 +0.7
445,298 - +0.1
445,306 + -0.8
445,314 - -3.2
445,347 - -0.0
445,456 - -2.4
445,496 - -2.1
445,497 + -1.4
445,497 + -0.0
445,497 + -0.1
445,497 + -2.9
445,505 - -0.2
445,505 - -3.5
445,505 - +0.0
445,505 - -0.2
445,508 + -3.2
445,508 + -1.7
445,514 - -1.4
445,516 - +0.5
445,516 - -1.2
445,558 + -1.0
445,638 - -0.5
445,685 - +0.4
445,782 - -2.7
445,904 + CSW01_02210 0.12 +1.0
445,996 + CSW01_02210 0.15 -3.1
446,004 - CSW01_02210 0.15 -2.9
446,004 - CSW01_02210 0.15 -3.2
446,004 - CSW01_02210 0.15 -0.4
446,027 + CSW01_02210 0.15 -0.0
446,027 + CSW01_02210 0.15 -0.6
446,027 + CSW01_02210 0.15 +1.4
446,035 - CSW01_02210 0.16 +0.4
446,035 - CSW01_02210 0.16 -3.2
446,035 - CSW01_02210 0.16 -3.5
446,035 - CSW01_02210 0.16 -2.0
446,063 + CSW01_02210 0.16 -2.7
446,064 + CSW01_02210 0.16 -3.5
446,071 - CSW01_02210 0.17 +1.3
446,155 - CSW01_02210 0.19 -2.3
446,216 + CSW01_02210 0.20 -2.5
446,224 - CSW01_02210 0.21 +1.0
446,224 - CSW01_02210 0.21 -4.1
446,294 + CSW01_02210 0.22 -0.9
446,294 + CSW01_02210 0.22 -1.8
446,294 + CSW01_02210 0.22 +0.4
446,294 + CSW01_02210 0.22 +0.7
446,302 - CSW01_02210 0.23 -2.2
446,302 - CSW01_02210 0.23 -2.7
446,364 - CSW01_02210 0.24 -0.9
446,384 + CSW01_02210 0.25 -1.8

Or see this region's nucleotide sequence