Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01390

Experiment: ICP3_phage_411_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01385 and CSW01_01390 are separated by 362 nucleotidesCSW01_01390 and CSW01_01395 overlap by 35 nucleotides CSW01_01385: CSW01_01385 - DUF416 domain-containing protein, at 272,299 to 272,886 _01385 CSW01_01390: CSW01_01390 - mannose-6-phosphate isomerase, class I, at 273,249 to 274,448 _01390 CSW01_01395: CSW01_01395 - transcriptional regulator, at 274,414 to 275,394 _01395 Position (kb) 273 274 275Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 272.285 kb on + strandat 272.322 kb on - strandat 272.327 kb on - strandat 272.334 kb on + strandat 272.342 kb on - strandat 272.342 kb on - strandat 272.377 kb on - strand, within CSW01_01385at 272.425 kb on + strand, within CSW01_01385at 272.434 kb on + strand, within CSW01_01385at 272.449 kb on + strand, within CSW01_01385at 272.449 kb on + strand, within CSW01_01385at 272.623 kb on - strand, within CSW01_01385at 272.688 kb on + strand, within CSW01_01385at 272.688 kb on + strand, within CSW01_01385at 272.694 kb on - strand, within CSW01_01385at 272.706 kb on - strand, within CSW01_01385at 272.747 kb on - strand, within CSW01_01385at 272.764 kb on + strand, within CSW01_01385at 272.764 kb on + strand, within CSW01_01385at 272.764 kb on + strand, within CSW01_01385at 272.772 kb on - strand, within CSW01_01385at 272.772 kb on - strand, within CSW01_01385at 272.813 kb on + strand, within CSW01_01385at 272.813 kb on + strand, within CSW01_01385at 272.821 kb on - strand, within CSW01_01385at 272.821 kb on - strand, within CSW01_01385at 272.837 kb on + strandat 272.923 kb on - strandat 273.058 kb on + strandat 273.058 kb on + strandat 273.058 kb on + strandat 273.068 kb on + strandat 273.076 kb on - strandat 273.076 kb on - strandat 273.086 kb on + strandat 273.117 kb on - strandat 273.246 kb on + strandat 273.246 kb on + strandat 273.254 kb on - strandat 273.289 kb on + strandat 273.289 kb on + strandat 273.311 kb on + strandat 273.311 kb on + strandat 273.316 kb on + strandat 273.316 kb on + strandat 273.316 kb on + strandat 273.316 kb on + strandat 273.316 kb on + strandat 273.319 kb on - strandat 273.319 kb on - strandat 273.324 kb on - strandat 273.383 kb on + strand, within CSW01_01390at 273.383 kb on + strand, within CSW01_01390at 273.383 kb on + strand, within CSW01_01390at 273.391 kb on - strand, within CSW01_01390at 273.395 kb on + strand, within CSW01_01390at 273.395 kb on + strand, within CSW01_01390at 273.490 kb on + strand, within CSW01_01390at 273.490 kb on + strand, within CSW01_01390at 273.500 kb on - strand, within CSW01_01390at 273.507 kb on - strand, within CSW01_01390at 273.659 kb on + strand, within CSW01_01390at 273.659 kb on + strand, within CSW01_01390at 273.664 kb on + strand, within CSW01_01390at 273.667 kb on - strand, within CSW01_01390at 273.667 kb on - strand, within CSW01_01390at 273.667 kb on - strand, within CSW01_01390at 273.674 kb on + strand, within CSW01_01390at 273.674 kb on + strand, within CSW01_01390at 273.681 kb on - strand, within CSW01_01390at 273.709 kb on + strand, within CSW01_01390at 273.748 kb on - strand, within CSW01_01390at 273.782 kb on - strand, within CSW01_01390at 273.784 kb on + strand, within CSW01_01390at 273.785 kb on + strand, within CSW01_01390at 273.792 kb on - strand, within CSW01_01390at 273.793 kb on - strand, within CSW01_01390at 273.793 kb on - strand, within CSW01_01390at 273.886 kb on + strand, within CSW01_01390at 273.938 kb on + strand, within CSW01_01390at 273.958 kb on + strand, within CSW01_01390at 273.997 kb on - strand, within CSW01_01390at 273.997 kb on - strand, within CSW01_01390at 274.019 kb on + strand, within CSW01_01390at 274.021 kb on + strand, within CSW01_01390at 274.038 kb on + strand, within CSW01_01390at 274.038 kb on + strand, within CSW01_01390at 274.038 kb on + strand, within CSW01_01390at 274.038 kb on + strand, within CSW01_01390at 274.046 kb on - strand, within CSW01_01390at 274.046 kb on - strand, within CSW01_01390at 274.046 kb on - strand, within CSW01_01390at 274.046 kb on - strand, within CSW01_01390at 274.046 kb on - strand, within CSW01_01390at 274.046 kb on - strand, within CSW01_01390at 274.056 kb on + strand, within CSW01_01390at 274.057 kb on + strand, within CSW01_01390at 274.089 kb on + strand, within CSW01_01390at 274.099 kb on + strand, within CSW01_01390at 274.099 kb on + strand, within CSW01_01390at 274.100 kb on - strand, within CSW01_01390at 274.100 kb on - strand, within CSW01_01390at 274.102 kb on - strand, within CSW01_01390at 274.107 kb on - strand, within CSW01_01390at 274.111 kb on + strand, within CSW01_01390at 274.111 kb on + strand, within CSW01_01390at 274.119 kb on - strand, within CSW01_01390at 274.119 kb on - strand, within CSW01_01390at 274.129 kb on + strand, within CSW01_01390at 274.129 kb on + strand, within CSW01_01390at 274.130 kb on + strand, within CSW01_01390at 274.184 kb on - strand, within CSW01_01390at 274.189 kb on + strand, within CSW01_01390at 274.214 kb on + strand, within CSW01_01390at 274.216 kb on + strand, within CSW01_01390at 274.224 kb on - strand, within CSW01_01390at 274.224 kb on - strand, within CSW01_01390at 274.224 kb on - strand, within CSW01_01390at 274.273 kb on + strand, within CSW01_01390at 274.289 kb on - strand, within CSW01_01390at 274.334 kb on - strandat 274.334 kb on - strandat 274.334 kb on - strandat 274.408 kb on + strandat 274.461 kb on - strandat 274.463 kb on + strandat 274.471 kb on - strandat 274.498 kb on + strandat 274.568 kb on + strand, within CSW01_01395at 274.629 kb on + strand, within CSW01_01395at 274.689 kb on + strand, within CSW01_01395at 274.690 kb on + strand, within CSW01_01395at 274.703 kb on - strand, within CSW01_01395at 274.746 kb on - strand, within CSW01_01395at 274.756 kb on + strand, within CSW01_01395at 274.764 kb on - strand, within CSW01_01395at 274.794 kb on - strand, within CSW01_01395at 274.895 kb on + strand, within CSW01_01395at 274.900 kb on + strand, within CSW01_01395at 274.913 kb on + strand, within CSW01_01395at 274.932 kb on + strand, within CSW01_01395at 274.937 kb on + strand, within CSW01_01395at 274.940 kb on - strand, within CSW01_01395at 274.991 kb on - strand, within CSW01_01395at 275.004 kb on + strand, within CSW01_01395at 275.004 kb on + strand, within CSW01_01395at 275.004 kb on + strand, within CSW01_01395at 275.004 kb on + strand, within CSW01_01395at 275.004 kb on + strand, within CSW01_01395at 275.004 kb on + strand, within CSW01_01395at 275.004 kb on + strand, within CSW01_01395at 275.004 kb on + strand, within CSW01_01395at 275.004 kb on + strand, within CSW01_01395at 275.012 kb on - strand, within CSW01_01395at 275.012 kb on - strand, within CSW01_01395at 275.012 kb on - strand, within CSW01_01395at 275.012 kb on - strand, within CSW01_01395at 275.012 kb on - strand, within CSW01_01395at 275.012 kb on - strand, within CSW01_01395at 275.012 kb on - strand, within CSW01_01395at 275.012 kb on - strand, within CSW01_01395at 275.012 kb on - strand, within CSW01_01395at 275.012 kb on - strand, within CSW01_01395at 275.012 kb on - strand, within CSW01_01395at 275.012 kb on - strand, within CSW01_01395at 275.012 kb on - strand, within CSW01_01395at 275.014 kb on + strand, within CSW01_01395at 275.014 kb on + strand, within CSW01_01395at 275.022 kb on - strand, within CSW01_01395at 275.043 kb on - strand, within CSW01_01395at 275.045 kb on - strand, within CSW01_01395at 275.085 kb on + strand, within CSW01_01395at 275.109 kb on - strand, within CSW01_01395at 275.114 kb on - strand, within CSW01_01395at 275.209 kb on + strand, within CSW01_01395at 275.233 kb on + strand, within CSW01_01395at 275.265 kb on - strand, within CSW01_01395at 275.294 kb on + strand, within CSW01_01395at 275.299 kb on + strandat 275.439 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1
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272,285 + -0.7
272,322 - -1.7
272,327 - +1.1
272,334 + -2.0
272,342 - -4.6
272,342 - -1.2
272,377 - CSW01_01385 0.13 -0.6
272,425 + CSW01_01385 0.21 +0.1
272,434 + CSW01_01385 0.23 -2.1
272,449 + CSW01_01385 0.26 +0.1
272,449 + CSW01_01385 0.26 -2.2
272,623 - CSW01_01385 0.55 +2.8
272,688 + CSW01_01385 0.66 +2.0
272,688 + CSW01_01385 0.66 -0.0
272,694 - CSW01_01385 0.67 -0.1
272,706 - CSW01_01385 0.69 -3.2
272,747 - CSW01_01385 0.76 -2.9
272,764 + CSW01_01385 0.79 -0.1
272,764 + CSW01_01385 0.79 -3.3
272,764 + CSW01_01385 0.79 -3.1
272,772 - CSW01_01385 0.80 +0.7
272,772 - CSW01_01385 0.80 +0.6
272,813 + CSW01_01385 0.87 -3.5
272,813 + CSW01_01385 0.87 -1.7
272,821 - CSW01_01385 0.89 +1.9
272,821 - CSW01_01385 0.89 -2.9
272,837 + -0.4
272,923 - -1.4
273,058 + -1.6
273,058 + -0.0
273,058 + -0.1
273,068 + +0.7
273,076 - -1.7
273,076 - -3.1
273,086 + +1.3
273,117 - +1.4
273,246 + -0.4
273,246 + -0.5
273,254 - -0.9
273,289 + +2.4
273,289 + +2.1
273,311 + +2.9
273,311 + +2.6
273,316 + +3.2
273,316 + +3.6
273,316 + +2.5
273,316 + +2.0
273,316 + +2.4
273,319 - +2.5
273,319 - +2.4
273,324 - +3.4
273,383 + CSW01_01390 0.11 +2.3
273,383 + CSW01_01390 0.11 +1.9
273,383 + CSW01_01390 0.11 +2.4
273,391 - CSW01_01390 0.12 +1.9
273,395 + CSW01_01390 0.12 +2.5
273,395 + CSW01_01390 0.12 +1.6
273,490 + CSW01_01390 0.20 +2.2
273,490 + CSW01_01390 0.20 +2.3
273,500 - CSW01_01390 0.21 +2.0
273,507 - CSW01_01390 0.21 +2.7
273,659 + CSW01_01390 0.34 +2.0
273,659 + CSW01_01390 0.34 +2.1
273,664 + CSW01_01390 0.35 +3.5
273,667 - CSW01_01390 0.35 +1.9
273,667 - CSW01_01390 0.35 +1.6
273,667 - CSW01_01390 0.35 +2.3
273,674 + CSW01_01390 0.35 +2.1
273,674 + CSW01_01390 0.35 -0.3
273,681 - CSW01_01390 0.36 +2.9
273,709 + CSW01_01390 0.38 +2.3
273,748 - CSW01_01390 0.42 +2.6
273,782 - CSW01_01390 0.44 +3.2
273,784 + CSW01_01390 0.45 +2.8
273,785 + CSW01_01390 0.45 +2.7
273,792 - CSW01_01390 0.45 +1.9
273,793 - CSW01_01390 0.45 +1.9
273,793 - CSW01_01390 0.45 +3.5
273,886 + CSW01_01390 0.53 +2.5
273,938 + CSW01_01390 0.57 +1.5
273,958 + CSW01_01390 0.59 +2.0
273,997 - CSW01_01390 0.62 +1.4
273,997 - CSW01_01390 0.62 +3.0
274,019 + CSW01_01390 0.64 +0.8
274,021 + CSW01_01390 0.64 +1.9
274,038 + CSW01_01390 0.66 +2.4
274,038 + CSW01_01390 0.66 +2.8
274,038 + CSW01_01390 0.66 +2.4
274,038 + CSW01_01390 0.66 +2.5
274,046 - CSW01_01390 0.66 +2.4
274,046 - CSW01_01390 0.66 +2.8
274,046 - CSW01_01390 0.66 +2.0
274,046 - CSW01_01390 0.66 +1.7
274,046 - CSW01_01390 0.66 +1.4
274,046 - CSW01_01390 0.66 +2.8
274,056 + CSW01_01390 0.67 +2.6
274,057 + CSW01_01390 0.67 +1.9
274,089 + CSW01_01390 0.70 +2.1
274,099 + CSW01_01390 0.71 +1.9
274,099 + CSW01_01390 0.71 +2.3
274,100 - CSW01_01390 0.71 +1.9
274,100 - CSW01_01390 0.71 +2.7
274,102 - CSW01_01390 0.71 +2.5
274,107 - CSW01_01390 0.71 +2.4
274,111 + CSW01_01390 0.72 +0.2
274,111 + CSW01_01390 0.72 -4.0
274,119 - CSW01_01390 0.72 +2.9
274,119 - CSW01_01390 0.72 +2.8
274,129 + CSW01_01390 0.73 +2.6
274,129 + CSW01_01390 0.73 +3.8
274,130 + CSW01_01390 0.73 +1.3
274,184 - CSW01_01390 0.78 +2.7
274,189 + CSW01_01390 0.78 +2.0
274,214 + CSW01_01390 0.80 +2.9
274,216 + CSW01_01390 0.81 +2.7
274,224 - CSW01_01390 0.81 +2.6
274,224 - CSW01_01390 0.81 +1.6
274,224 - CSW01_01390 0.81 +2.5
274,273 + CSW01_01390 0.85 +2.5
274,289 - CSW01_01390 0.87 +2.4
274,334 - +2.8
274,334 - +2.5
274,334 - +2.7
274,408 + +0.9
274,461 - +1.7
274,463 + -3.7
274,471 - +2.2
274,498 + -0.8
274,568 + CSW01_01395 0.16 +0.1
274,629 + CSW01_01395 0.22 -3.0
274,689 + CSW01_01395 0.28 -0.1
274,690 + CSW01_01395 0.28 -2.5
274,703 - CSW01_01395 0.29 +0.1
274,746 - CSW01_01395 0.34 +0.8
274,756 + CSW01_01395 0.35 -1.6
274,764 - CSW01_01395 0.36 -1.6
274,794 - CSW01_01395 0.39 +1.5
274,895 + CSW01_01395 0.49 +0.1
274,900 + CSW01_01395 0.50 -1.0
274,913 + CSW01_01395 0.51 -0.1
274,932 + CSW01_01395 0.53 +1.1
274,937 + CSW01_01395 0.53 +0.8
274,940 - CSW01_01395 0.54 -3.7
274,991 - CSW01_01395 0.59 -3.6
275,004 + CSW01_01395 0.60 +1.0
275,004 + CSW01_01395 0.60 +0.6
275,004 + CSW01_01395 0.60 -0.0
275,004 + CSW01_01395 0.60 +0.1
275,004 + CSW01_01395 0.60 -3.4
275,004 + CSW01_01395 0.60 -0.3
275,004 + CSW01_01395 0.60 +0.2
275,004 + CSW01_01395 0.60 +1.3
275,004 + CSW01_01395 0.60 +0.3
275,012 - CSW01_01395 0.61 +0.6
275,012 - CSW01_01395 0.61 +0.1
275,012 - CSW01_01395 0.61 -3.3
275,012 - CSW01_01395 0.61 +0.7
275,012 - CSW01_01395 0.61 +0.2
275,012 - CSW01_01395 0.61 -1.5
275,012 - CSW01_01395 0.61 +0.9
275,012 - CSW01_01395 0.61 -3.8
275,012 - CSW01_01395 0.61 +1.2
275,012 - CSW01_01395 0.61 +1.5
275,012 - CSW01_01395 0.61 -0.5
275,012 - CSW01_01395 0.61 +0.4
275,012 - CSW01_01395 0.61 +1.5
275,014 + CSW01_01395 0.61 +0.7
275,014 + CSW01_01395 0.61 +0.5
275,022 - CSW01_01395 0.62 -2.2
275,043 - CSW01_01395 0.64 +1.4
275,045 - CSW01_01395 0.64 -0.7
275,085 + CSW01_01395 0.68 +0.4
275,109 - CSW01_01395 0.71 -1.5
275,114 - CSW01_01395 0.71 +0.5
275,209 + CSW01_01395 0.81 +1.5
275,233 + CSW01_01395 0.83 -1.6
275,265 - CSW01_01395 0.87 +0.9
275,294 + CSW01_01395 0.90 -2.9
275,299 + -2.3
275,439 - -1.4

Or see this region's nucleotide sequence