Experiment: ICP3_phage_411_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_01130 and CSW01_01135 overlap by 4 nucleotides CSW01_01135 and CSW01_01140 overlap by 45 nucleotides CSW01_01140 and CSW01_01145 are separated by 65 nucleotides
CSW01_01130: CSW01_01130 - lipid A biosynthesis lauroyl acyltransferase, at 220,386 to 221,342
_01130
CSW01_01135: CSW01_01135 - nucleoid occlusion factor SlmA, at 221,339 to 221,929
_01135
CSW01_01140: CSW01_01140 - lipid A biosynthesis lauroyl acyltransferase, at 221,885 to 222,022
_01140
CSW01_01145: CSW01_01145 - bifunctional phosphopantothenoylcysteine decarboxylase CoaC/phosphopantothenate--cysteine ligase CoaB, at 222,088 to 223,287
_01145
Position (kb) 221
222
223 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 221.332 kb on + strand at 221.340 kb on + strand at 221.340 kb on + strand at 221.340 kb on + strand at 221.340 kb on + strand at 221.340 kb on + strand at 221.340 kb on + strand at 221.340 kb on + strand at 221.340 kb on + strand at 221.340 kb on + strand at 221.348 kb on - strand at 221.348 kb on - strand at 221.348 kb on - strand at 221.348 kb on - strand at 221.348 kb on - strand at 221.348 kb on - strand at 221.348 kb on - strand at 221.348 kb on - strand at 221.348 kb on - strand at 221.348 kb on - strand at 221.348 kb on - strand at 221.348 kb on - strand at 221.360 kb on - strand at 221.432 kb on + strand, within CSW01_01135 at 221.432 kb on + strand, within CSW01_01135 at 221.432 kb on + strand, within CSW01_01135 at 221.438 kb on + strand, within CSW01_01135 at 221.441 kb on - strand, within CSW01_01135 at 221.441 kb on - strand, within CSW01_01135 at 221.450 kb on - strand, within CSW01_01135 at 221.494 kb on - strand, within CSW01_01135 at 221.509 kb on - strand, within CSW01_01135 at 221.518 kb on + strand, within CSW01_01135 at 221.543 kb on - strand, within CSW01_01135 at 221.543 kb on - strand, within CSW01_01135 at 221.543 kb on - strand, within CSW01_01135 at 221.591 kb on + strand, within CSW01_01135 at 221.591 kb on + strand, within CSW01_01135 at 221.591 kb on + strand, within CSW01_01135 at 221.591 kb on + strand, within CSW01_01135 at 221.591 kb on + strand, within CSW01_01135 at 221.599 kb on - strand, within CSW01_01135 at 221.616 kb on + strand, within CSW01_01135 at 221.646 kb on - strand, within CSW01_01135 at 221.799 kb on + strand, within CSW01_01135 at 221.821 kb on - strand, within CSW01_01135 at 221.821 kb on - strand, within CSW01_01135 at 221.845 kb on + strand, within CSW01_01135 at 221.890 kb on + strand at 221.982 kb on + strand, within CSW01_01140 at 222.002 kb on + strand, within CSW01_01140 at 222.017 kb on + strand at 222.017 kb on + strand at 222.017 kb on - strand at 222.027 kb on + strand at 222.027 kb on + strand at 222.035 kb on - strand at 222.035 kb on - strand at 222.035 kb on - strand at 222.035 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1 remove 221,332 + -3.8 221,340 + +0.6 221,340 + -1.2 221,340 + -4.1 221,340 + -0.4 221,340 + -0.9 221,340 + -1.5 221,340 + +2.6 221,340 + +0.4 221,340 + -3.1 221,348 - +0.1 221,348 - +1.3 221,348 - -0.1 221,348 - -4.3 221,348 - +1.4 221,348 - +1.4 221,348 - +1.7 221,348 - -0.3 221,348 - -1.0 221,348 - +0.4 221,348 - -1.7 221,348 - +0.3 221,360 - +1.7 221,432 + CSW01_01135 0.16 -3.8 221,432 + CSW01_01135 0.16 -0.2 221,432 + CSW01_01135 0.16 -0.5 221,438 + CSW01_01135 0.17 -2.8 221,441 - CSW01_01135 0.17 -3.1 221,441 - CSW01_01135 0.17 -2.9 221,450 - CSW01_01135 0.19 -0.3 221,494 - CSW01_01135 0.26 -0.2 221,509 - CSW01_01135 0.29 -0.7 221,518 + CSW01_01135 0.30 +0.4 221,543 - CSW01_01135 0.35 +0.6 221,543 - CSW01_01135 0.35 +2.1 221,543 - CSW01_01135 0.35 -0.3 221,591 + CSW01_01135 0.43 +1.1 221,591 + CSW01_01135 0.43 -4.5 221,591 + CSW01_01135 0.43 +0.1 221,591 + CSW01_01135 0.43 -2.8 221,591 + CSW01_01135 0.43 -0.5 221,599 - CSW01_01135 0.44 +0.7 221,616 + CSW01_01135 0.47 -1.2 221,646 - CSW01_01135 0.52 -0.8 221,799 + CSW01_01135 0.78 +1.1 221,821 - CSW01_01135 0.82 +0.6 221,821 - CSW01_01135 0.82 -1.7 221,845 + CSW01_01135 0.86 +1.4 221,890 + -1.2 221,982 + CSW01_01140 0.70 -0.7 222,002 + CSW01_01140 0.85 -4.9 222,017 + -1.7 222,017 + -4.2 222,017 - +0.2 222,027 + -1.4 222,027 + +0.0 222,035 - -3.5 222,035 - +0.9 222,035 - +1.0 222,035 - +0.2
Or see this region's nucleotide sequence