Experiment: ICP3_phage_411_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_00920 and CSW01_00925 are separated by 2 nucleotides CSW01_00925 and CSW01_00930 are separated by 174 nucleotides
CSW01_00920: CSW01_00920 - ABC transporter permease, at 172,051 to 173,028
_00920
CSW01_00925: CSW01_00925 - ABC transporter permease, at 173,031 to 173,969
_00925
CSW01_00930: CSW01_00930 - SPOR domain-containing protein, at 174,144 to 175,091
_00930
Position (kb) 173
174 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 172.065 kb on + strand at 172.109 kb on + strand at 172.173 kb on - strand, within CSW01_00920 at 172.198 kb on - strand, within CSW01_00920 at 172.208 kb on + strand, within CSW01_00920 at 172.216 kb on - strand, within CSW01_00920 at 172.264 kb on + strand, within CSW01_00920 at 172.272 kb on - strand, within CSW01_00920 at 172.348 kb on - strand, within CSW01_00920 at 172.358 kb on + strand, within CSW01_00920 at 172.366 kb on - strand, within CSW01_00920 at 172.371 kb on - strand, within CSW01_00920 at 172.381 kb on - strand, within CSW01_00920 at 172.392 kb on + strand, within CSW01_00920 at 172.500 kb on + strand, within CSW01_00920 at 172.510 kb on - strand, within CSW01_00920 at 172.525 kb on + strand, within CSW01_00920 at 172.536 kb on + strand, within CSW01_00920 at 172.538 kb on + strand, within CSW01_00920 at 172.564 kb on + strand, within CSW01_00920 at 172.613 kb on - strand, within CSW01_00920 at 172.623 kb on - strand, within CSW01_00920 at 172.635 kb on + strand, within CSW01_00920 at 172.690 kb on + strand, within CSW01_00920 at 172.690 kb on + strand, within CSW01_00920 at 172.691 kb on - strand, within CSW01_00920 at 172.697 kb on + strand, within CSW01_00920 at 172.698 kb on - strand, within CSW01_00920 at 172.705 kb on - strand, within CSW01_00920 at 172.705 kb on - strand, within CSW01_00920 at 172.707 kb on + strand, within CSW01_00920 at 172.722 kb on + strand, within CSW01_00920 at 172.722 kb on + strand, within CSW01_00920 at 172.722 kb on + strand, within CSW01_00920 at 172.722 kb on + strand, within CSW01_00920 at 172.722 kb on + strand, within CSW01_00920 at 172.722 kb on + strand, within CSW01_00920 at 172.722 kb on + strand, within CSW01_00920 at 172.730 kb on - strand, within CSW01_00920 at 172.730 kb on - strand, within CSW01_00920 at 172.730 kb on - strand, within CSW01_00920 at 172.730 kb on - strand, within CSW01_00920 at 172.730 kb on - strand, within CSW01_00920 at 172.730 kb on - strand, within CSW01_00920 at 172.730 kb on - strand, within CSW01_00920 at 172.730 kb on - strand, within CSW01_00920 at 172.730 kb on - strand, within CSW01_00920 at 172.730 kb on - strand, within CSW01_00920 at 172.730 kb on - strand, within CSW01_00920 at 172.799 kb on + strand, within CSW01_00920 at 172.814 kb on + strand, within CSW01_00920 at 172.832 kb on - strand, within CSW01_00920 at 172.833 kb on - strand, within CSW01_00920 at 172.897 kb on - strand, within CSW01_00920 at 172.977 kb on + strand at 172.979 kb on + strand at 173.023 kb on + strand at 173.043 kb on - strand at 173.043 kb on - strand at 173.043 kb on - strand at 173.043 kb on - strand at 173.043 kb on - strand at 173.066 kb on - strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.076 kb on - strand at 173.076 kb on - strand at 173.076 kb on - strand at 173.076 kb on - strand at 173.076 kb on - strand at 173.076 kb on - strand at 173.076 kb on - strand at 173.076 kb on - strand at 173.076 kb on - strand at 173.076 kb on - strand at 173.076 kb on - strand at 173.076 kb on - strand at 173.076 kb on - strand at 173.076 kb on - strand at 173.076 kb on - strand at 173.076 kb on - strand at 173.076 kb on - strand at 173.076 kb on - strand at 173.076 kb on - strand at 173.076 kb on - strand at 173.092 kb on + strand at 173.100 kb on - strand at 173.100 kb on - strand at 173.125 kb on + strand, within CSW01_00925 at 173.125 kb on + strand, within CSW01_00925 at 173.125 kb on + strand, within CSW01_00925 at 173.125 kb on + strand, within CSW01_00925 at 173.133 kb on - strand, within CSW01_00925 at 173.191 kb on - strand, within CSW01_00925 at 173.228 kb on + strand, within CSW01_00925 at 173.228 kb on + strand, within CSW01_00925 at 173.228 kb on + strand, within CSW01_00925 at 173.228 kb on + strand, within CSW01_00925 at 173.229 kb on + strand, within CSW01_00925 at 173.275 kb on + strand, within CSW01_00925 at 173.313 kb on + strand, within CSW01_00925 at 173.359 kb on + strand, within CSW01_00925 at 173.367 kb on - strand, within CSW01_00925 at 173.367 kb on - strand, within CSW01_00925 at 173.367 kb on - strand, within CSW01_00925 at 173.367 kb on - strand, within CSW01_00925 at 173.448 kb on + strand, within CSW01_00925 at 173.643 kb on - strand, within CSW01_00925 at 173.659 kb on + strand, within CSW01_00925 at 173.667 kb on - strand, within CSW01_00925 at 173.686 kb on + strand, within CSW01_00925 at 173.763 kb on - strand, within CSW01_00925 at 173.781 kb on + strand, within CSW01_00925 at 173.789 kb on - strand, within CSW01_00925 at 173.816 kb on - strand, within CSW01_00925 at 173.827 kb on + strand, within CSW01_00925 at 173.964 kb on + strand at 173.964 kb on + strand at 173.964 kb on + strand at 173.972 kb on - strand at 173.972 kb on - strand at 174.125 kb on + strand at 174.125 kb on + strand at 174.125 kb on + strand at 174.125 kb on + strand at 174.125 kb on + strand at 174.125 kb on + strand at 174.125 kb on + strand at 174.133 kb on - strand at 174.133 kb on - strand at 174.133 kb on - strand at 174.133 kb on - strand at 174.133 kb on - strand at 174.133 kb on - strand at 174.133 kb on - strand at 174.154 kb on + strand at 174.163 kb on + strand at 174.219 kb on + strand at 174.254 kb on + strand, within CSW01_00930 at 174.289 kb on + strand, within CSW01_00930 at 174.407 kb on - strand, within CSW01_00930 at 174.425 kb on + strand, within CSW01_00930 at 174.427 kb on - strand, within CSW01_00930 at 174.431 kb on + strand, within CSW01_00930 at 174.439 kb on - strand, within CSW01_00930 at 174.448 kb on + strand, within CSW01_00930 at 174.546 kb on + strand, within CSW01_00930 at 174.639 kb on + strand, within CSW01_00930 at 174.729 kb on + strand, within CSW01_00930 at 174.739 kb on + strand, within CSW01_00930 at 174.739 kb on + strand, within CSW01_00930 at 174.739 kb on + strand, within CSW01_00930 at 174.739 kb on + strand, within CSW01_00930 at 174.739 kb on - strand, within CSW01_00930 at 174.740 kb on + strand, within CSW01_00930 at 174.740 kb on + strand, within CSW01_00930 at 174.740 kb on + strand, within CSW01_00930 at 174.741 kb on + strand, within CSW01_00930 at 174.747 kb on - strand, within CSW01_00930 at 174.747 kb on - strand, within CSW01_00930 at 174.747 kb on - strand, within CSW01_00930 at 174.747 kb on - strand, within CSW01_00930 at 174.748 kb on - strand, within CSW01_00930 at 174.812 kb on + strand, within CSW01_00930 at 174.818 kb on - strand, within CSW01_00930 at 174.818 kb on - strand, within CSW01_00930 at 174.820 kb on - strand, within CSW01_00930 at 174.839 kb on + strand, within CSW01_00930 at 174.847 kb on - strand, within CSW01_00930 at 174.888 kb on + strand, within CSW01_00930 at 174.909 kb on - strand, within CSW01_00930 at 174.930 kb on + strand, within CSW01_00930
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep1 remove 172,065 + +0.3 172,109 + +1.1 172,173 - CSW01_00920 0.12 -3.1 172,198 - CSW01_00920 0.15 +1.2 172,208 + CSW01_00920 0.16 +0.0 172,216 - CSW01_00920 0.17 -4.3 172,264 + CSW01_00920 0.22 +1.2 172,272 - CSW01_00920 0.23 -0.3 172,348 - CSW01_00920 0.30 +0.4 172,358 + CSW01_00920 0.31 -1.7 172,366 - CSW01_00920 0.32 +0.5 172,371 - CSW01_00920 0.33 -2.0 172,381 - CSW01_00920 0.34 -0.4 172,392 + CSW01_00920 0.35 -0.8 172,500 + CSW01_00920 0.46 -2.5 172,510 - CSW01_00920 0.47 -0.2 172,525 + CSW01_00920 0.48 +0.6 172,536 + CSW01_00920 0.50 -0.4 172,538 + CSW01_00920 0.50 -0.0 172,564 + CSW01_00920 0.52 -2.0 172,613 - CSW01_00920 0.57 -1.6 172,623 - CSW01_00920 0.58 -0.1 172,635 + CSW01_00920 0.60 +0.7 172,690 + CSW01_00920 0.65 -1.9 172,690 + CSW01_00920 0.65 -0.1 172,691 - CSW01_00920 0.65 -0.8 172,697 + CSW01_00920 0.66 +1.3 172,698 - CSW01_00920 0.66 +0.1 172,705 - CSW01_00920 0.67 -2.9 172,705 - CSW01_00920 0.67 +1.0 172,707 + CSW01_00920 0.67 +1.3 172,722 + CSW01_00920 0.69 -0.1 172,722 + CSW01_00920 0.69 +0.6 172,722 + CSW01_00920 0.69 +0.1 172,722 + CSW01_00920 0.69 -1.7 172,722 + CSW01_00920 0.69 +0.0 172,722 + CSW01_00920 0.69 +1.2 172,722 + CSW01_00920 0.69 -2.3 172,730 - CSW01_00920 0.69 +0.2 172,730 - CSW01_00920 0.69 -0.2 172,730 - CSW01_00920 0.69 +1.5 172,730 - CSW01_00920 0.69 -2.0 172,730 - CSW01_00920 0.69 -1.4 172,730 - CSW01_00920 0.69 -0.1 172,730 - CSW01_00920 0.69 -2.1 172,730 - CSW01_00920 0.69 -2.3 172,730 - CSW01_00920 0.69 -1.0 172,730 - CSW01_00920 0.69 -2.7 172,730 - CSW01_00920 0.69 +0.5 172,799 + CSW01_00920 0.76 -0.4 172,814 + CSW01_00920 0.78 -1.4 172,832 - CSW01_00920 0.80 -0.2 172,833 - CSW01_00920 0.80 +1.7 172,897 - CSW01_00920 0.87 -0.7 172,977 + -2.9 172,979 + -3.5 173,023 + +0.7 173,043 - -2.5 173,043 - -0.3 173,043 - +0.6 173,043 - +0.0 173,043 - -0.2 173,066 - +0.3 173,068 + -1.7 173,068 + -3.7 173,068 + +0.1 173,068 + -3.3 173,068 + +1.4 173,068 + +0.5 173,068 + -2.0 173,068 + -1.9 173,068 + -0.3 173,068 + -2.9 173,068 + +0.2 173,068 + +0.4 173,068 + -0.9 173,068 + +0.1 173,068 + -0.0 173,068 + +0.4 173,068 + +0.0 173,068 + -3.5 173,068 + +0.5 173,068 + +0.2 173,068 + +0.1 173,068 + -0.1 173,068 + -2.4 173,076 - -1.2 173,076 - +1.2 173,076 - +0.9 173,076 - -0.1 173,076 - -1.1 173,076 - -1.0 173,076 - -3.8 173,076 - -2.5 173,076 - +0.0 173,076 - -3.6 173,076 - +0.3 173,076 - -2.1 173,076 - -0.4 173,076 - +1.0 173,076 - -2.9 173,076 - -3.2 173,076 - +2.2 173,076 - +0.7 173,076 - -3.7 173,076 - +0.8 173,092 + -2.9 173,100 - -1.6 173,100 - +0.0 173,125 + CSW01_00925 0.10 -1.1 173,125 + CSW01_00925 0.10 +0.2 173,125 + CSW01_00925 0.10 +0.7 173,125 + CSW01_00925 0.10 +1.0 173,133 - CSW01_00925 0.11 -3.9 173,191 - CSW01_00925 0.17 +1.9 173,228 + CSW01_00925 0.21 +0.6 173,228 + CSW01_00925 0.21 -1.2 173,228 + CSW01_00925 0.21 +1.4 173,228 + CSW01_00925 0.21 +1.5 173,229 + CSW01_00925 0.21 +0.2 173,275 + CSW01_00925 0.26 -2.5 173,313 + CSW01_00925 0.30 -0.0 173,359 + CSW01_00925 0.35 +0.5 173,367 - CSW01_00925 0.36 -2.5 173,367 - CSW01_00925 0.36 -1.6 173,367 - CSW01_00925 0.36 +0.5 173,367 - CSW01_00925 0.36 -1.1 173,448 + CSW01_00925 0.44 +0.5 173,643 - CSW01_00925 0.65 -0.4 173,659 + CSW01_00925 0.67 +1.8 173,667 - CSW01_00925 0.68 +0.6 173,686 + CSW01_00925 0.70 -0.2 173,763 - CSW01_00925 0.78 +0.6 173,781 + CSW01_00925 0.80 +0.5 173,789 - CSW01_00925 0.81 +2.6 173,816 - CSW01_00925 0.84 +0.9 173,827 + CSW01_00925 0.85 +0.8 173,964 + +0.3 173,964 + -4.0 173,964 + +0.3 173,972 - -0.2 173,972 - -2.1 174,125 + +1.3 174,125 + -0.5 174,125 + +0.3 174,125 + +1.9 174,125 + -2.7 174,125 + +0.4 174,125 + +0.3 174,133 - -2.2 174,133 - -0.2 174,133 - -1.6 174,133 - +1.3 174,133 - -2.3 174,133 - +0.4 174,133 - +0.3 174,154 + +0.4 174,163 + -0.4 174,219 + -4.3 174,254 + CSW01_00930 0.12 +2.2 174,289 + CSW01_00930 0.15 +0.4 174,407 - CSW01_00930 0.28 +1.4 174,425 + CSW01_00930 0.30 +1.6 174,427 - CSW01_00930 0.30 -4.7 174,431 + CSW01_00930 0.30 +0.4 174,439 - CSW01_00930 0.31 -0.2 174,448 + CSW01_00930 0.32 +0.8 174,546 + CSW01_00930 0.42 +1.8 174,639 + CSW01_00930 0.52 -1.2 174,729 + CSW01_00930 0.62 -3.9 174,739 + CSW01_00930 0.63 +0.3 174,739 + CSW01_00930 0.63 -1.5 174,739 + CSW01_00930 0.63 +0.6 174,739 + CSW01_00930 0.63 +0.5 174,739 - CSW01_00930 0.63 -0.6 174,740 + CSW01_00930 0.63 -2.3 174,740 + CSW01_00930 0.63 +1.7 174,740 + CSW01_00930 0.63 -0.0 174,741 + CSW01_00930 0.63 -2.9 174,747 - CSW01_00930 0.64 -3.0 174,747 - CSW01_00930 0.64 +1.6 174,747 - CSW01_00930 0.64 -0.1 174,747 - CSW01_00930 0.64 -3.2 174,748 - CSW01_00930 0.64 +0.5 174,812 + CSW01_00930 0.70 -0.9 174,818 - CSW01_00930 0.71 +0.6 174,818 - CSW01_00930 0.71 +1.0 174,820 - CSW01_00930 0.71 -2.7 174,839 + CSW01_00930 0.73 +1.0 174,847 - CSW01_00930 0.74 -1.2 174,888 + CSW01_00930 0.78 -2.3 174,909 - CSW01_00930 0.81 -0.1 174,930 + CSW01_00930 0.83 +0.5
Or see this region's nucleotide sequence